Dynamic Functional Connectivity as a complex random walk: Definitions and the dFCwalk toolbox

• We have developed a framework to describe the dynamics of Functional Connectivity (dFC) estimated from brain activity time-series as a complex random walk in the space of possible functional networks. This conceptual and methodological framework considers dFC as a smooth reconfiguration process, combining “liquid” and “coordinated” aspects. Unlike other previous approaches, our method does not require the explicit extraction of discrete connectivity states.• In our previous work, we introduced several metrics for the quantitative characterization of the dFC random walk. First, dFC speed analyses extract the distribution of the time-resolved rate of reconfiguration of FC along time. These distributions have a clear peak (typical dFC speed, that can already serve as a biomarker) and fat tails (denoting deviations from Gaussianity that can be detected by suitable scaling analyses of FC network streams). Second, meta-connectivity (MC) analyses identify groups of functional links whose fluctuations co-vary in time and that define veritable dFC modules organized along specific dFC meta-hub controllers (differing from conventional FC modules and hubs). The decomposition of whole-brain dFC by MC allows performing dFC speed analyses separately for each of the detected dFC modules.• We present here blocks and pipelines for dFC random walk analyses that are made easily available through a dedicated MATLABⓇ toolbox (dFCwalk), openly downloadable. Although we applied such analyses mostly to fMRI resting state data, in principle our methods can be extended to any type of neural activity (from Local Field Potentials to EEG, MEG, fNIRS, etc.) or even non-neural time-series.

[1]  Dimitri Van De Ville,et al.  The dynamic functional connectome: State-of-the-art and perspectives , 2017, NeuroImage.

[2]  Christophe Bernard,et al.  Dynamic core-periphery structure of information sharing networks in entorhinal cortex and hippocampus , 2020, bioRxiv.

[3]  J. Wainwright,et al.  Linking environmental régimes, space and time: Interpretations of structural and functional connectivity , 2008 .

[4]  J. Kelso,et al.  Coordination Dynamics in Cognitive Neuroscience , 2016, Front. Neurosci..

[5]  B. Mandelbrot,et al.  Fractional Brownian Motions, Fractional Noises and Applications , 1968 .

[6]  Andreas Daffertshofer,et al.  Dynamic Functional Connectivity between order and randomness and its evolution across the human adult lifespan , 2020, NeuroImage.

[7]  K. Linkenkaer-Hansen,et al.  Long-Range Temporal Correlations and Scaling Behavior in Human Brain Oscillations , 2001, The Journal of Neuroscience.

[8]  Jeffrey M. Hausdorff,et al.  Long-range anticorrelations and non-Gaussian behavior of the heartbeat. , 1993, Physical review letters.

[9]  Jessica R. Cohen The behavioral and cognitive relevance of time-varying, dynamic changes in functional connectivity , 2017, NeuroImage.

[10]  Gustavo Deco,et al.  Functional connectivity dynamics: Modeling the switching behavior of the resting state , 2015, NeuroImage.

[11]  Krzysztof J. Gorgolewski,et al.  The Dynamics of Functional Brain Networks: Integrated Network States during Cognitive Task Performance , 2015, Neuron.

[12]  Béla Bollobás,et al.  Modern Graph Theory , 2002, Graduate Texts in Mathematics.

[13]  Thomas Boudou,et al.  Dynamic Functional Connectivity between order and randomness and its evolution across the human adult lifespan , 2020, NeuroImage.

[14]  Danielle S. Bassett,et al.  From Maps to Multi-dimensional Network Mechanisms of Mental Disorders , 2018, Neuron.

[15]  Andreas Daffertshofer,et al.  Model selection for identifying power-law scaling , 2015, NeuroImage.

[16]  Peter Fransson,et al.  Bursty properties revealed in large-scale brain networks with a point-based method for dynamic functional connectivity , 2016, Scientific Reports.

[17]  A. Agresti,et al.  Approximate is Better than “Exact” for Interval Estimation of Binomial Proportions , 1998 .

[18]  Jari Saramäki,et al.  Temporal Networks , 2011, Encyclopedia of Social Network Analysis and Mining.

[19]  Annette Witt,et al.  Quantification of Long-Range Persistence in Geophysical Time Series: Conventional and Benchmark-Based Improvement Techniques , 2013, Surveys in Geophysics.

[20]  Diego Lombardo,et al.  Modular slowing of resting-state dynamic functional connectivity as a marker of cognitive dysfunction induced by sleep deprivation , 2020, NeuroImage.

[21]  Christophe Bernard,et al.  Computing hubs in the hippocampus and cortex , 2019, Science Advances.

[22]  A. Belger,et al.  Dynamic functional connectivity analysis reveals transient states of dysconnectivity in schizophrenia , 2014, NeuroImage: Clinical.

[23]  Andrea Brovelli,et al.  Dynamic Reconfiguration of Visuomotor-Related Functional Connectivity Networks , 2017, The Journal of Neuroscience.

[24]  G. Deco,et al.  Ongoing Cortical Activity at Rest: Criticality, Multistability, and Ghost Attractors , 2012, The Journal of Neuroscience.

[25]  Olaf Sporns,et al.  The Human Connectome: A Structural Description of the Human Brain , 2005, PLoS Comput. Biol..

[26]  Danielle S. Bassett,et al.  Individual Differences in Dynamic Functional Brain Connectivity across the Human Lifespan , 2016, PLoS Comput. Biol..

[27]  Peter A. Bandettini,et al.  Task-based dynamic functional connectivity: Recent findings and open questions , 2017, NeuroImage.

[28]  Anders M. Dale,et al.  An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest , 2006, NeuroImage.

[29]  Andrea Brovelli,et al.  Dynamic reconfiguration of visuomotor-related functional connectivity networks. , 2016, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[30]  Michael Breakspear,et al.  Towards a statistical test for functional connectivity dynamics , 2015, NeuroImage.

[31]  M. Fox,et al.  Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging , 2007, Nature Reviews Neuroscience.

[32]  Biyu J. He Scale-free brain activity: past, present, and future , 2014, Trends in Cognitive Sciences.

[33]  Dimitri Van De Ville,et al.  On spurious and real fluctuations of dynamic functional connectivity during rest , 2015, NeuroImage.

[34]  Olaf Sporns,et al.  Complex network measures of brain connectivity: Uses and interpretations , 2010, NeuroImage.

[35]  O. Sporns,et al.  Complex brain networks: graph theoretical analysis of structural and functional systems , 2009, Nature Reviews Neuroscience.

[36]  Geoffrey E. Hinton,et al.  Visualizing Data using t-SNE , 2008 .

[37]  Stephen M Smith,et al.  Fast transient networks in spontaneous human brain activity , 2014, eLife.

[38]  Y.-Y. Liu,et al.  The fundamental advantages of temporal networks , 2016, Science.

[39]  D. Bassett,et al.  Dynamic reconfiguration of frontal brain networks during executive cognition in humans , 2015, Proceedings of the National Academy of Sciences.

[40]  Danielle S. Bassett,et al.  Brain Network Adaptability across Task States , 2014, PLoS Comput. Biol..

[41]  Marc Timme,et al.  Dynamic information routing in complex networks , 2015, Nature Communications.

[42]  Chin-Hui Lee,et al.  Evaluation of sliding window correlation performance for characterizing dynamic functional connectivity and brain states , 2016, NeuroImage.

[43]  Viktor K. Jirsa,et al.  Functional coordination of muscles underlying changes in behavioural dynamics , 2016, Scientific Reports.

[44]  Karl J. Friston,et al.  Structural and Functional Brain Networks: From Connections to Cognition , 2013, Science.

[45]  Gustavo Deco,et al.  Can sliding-window correlations reveal dynamic functional connectivity in resting-state fMRI? , 2016, NeuroImage.

[46]  Olaf Sporns,et al.  Edge-centric functional network representations of human cerebral cortex reveal overlapping system-level architecture , 2019, Nature Neuroscience.

[47]  David T. Jones,et al.  Non-Stationarity in the “Resting Brain’s” Modular Architecture , 2012, PloS one.

[48]  Danielle S Bassett,et al.  Cross-linked structure of network evolution. , 2013, Chaos.

[49]  Mark W. Woolrich,et al.  Spectrally resolved fast transient brain states in electrophysiological data , 2016, NeuroImage.

[50]  Eswar Damaraju,et al.  Tracking whole-brain connectivity dynamics in the resting state. , 2014, Cerebral cortex.

[51]  Viktor K. Jirsa,et al.  Modular slowing of resting-state dynamic functional connectivity as a marker of cognitive dysfunction induced by sleep deprivation , 2020, NeuroImage.

[52]  V. Calhoun,et al.  The Chronnectome: Time-Varying Connectivity Networks as the Next Frontier in fMRI Data Discovery , 2014, Neuron.