Cell-free gene expression

Cell-free gene expression (CFE) emerged as an alternative approach to living cells for specific applications in protein synthesis and labelling for structural biology and proteomics studies. CFE has since been repurposed as a versatile technology for synthetic biology and bioengineering. However, taking full advantage of this technology requires in-depth understanding of its fundamental workflow beyond existing protocols. This Primer provides new practitioners with a comprehensive, detailed and actionable guide to best practices in CFE, to inform research in the laboratory at the state of the art. We focus on Escherichia coli-based CFE systems, which remain the primary platform for efficient CFE. Producing proteins, biomanufacturing therapeutics, developing sensors and prototyping genetic circuits illustrate the broader utility and opportunities provided by this practical introduction to CFE. With its extensive functionality and portability, CFE is becoming a powerful and enabling research tool for biotechnology. Cell-free gene expression is useful for expressing proteins with post-translational modifications, with special folding requirements and whose expression is difficult in prokaryotic systems. Garenne et al. outline the best practices for the expression of proteins in a cell-free environment.

[1]  J. Varner,et al.  Dynamic Sequence Specific Constraint-Based Modeling of Cell-Free Protein Synthesis , 2018, Processes.

[2]  P. Leadlay,et al.  The biosynthetic gene cluster for the polyketide immunosuppressant rapamycin. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[3]  By Jared L Dopp,et al.  Cell-free supplement mixtures: Elucidating the history and biochemical utility of additives used to support in vitro protein synthesis in E. coli extract. , 2019, Biotechnology advances.

[4]  D. Daley,et al.  Cell‐free expression profiling of E. coli inner membrane proteins , 2010, Proteomics.

[5]  R. Stroud,et al.  Cell‐free complements in vivo expression of the E. coli membrane proteome , 2007, Protein science : a publication of the Protein Society.

[6]  Richard M. Murray,et al.  Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology , 2013, Journal of visualized experiments : JoVE.

[7]  Nicole E. Gregorio,et al.  Escherichia coli-Based Cell-Free Protein Synthesis: Protocols for a robust, flexible, and accessible platform technology. , 2019, Journal of visualized experiments : JoVE.

[8]  Vincent Noireaux,et al.  The All E. coli TX-TL Toolbox 2.0: A Platform for Cell-Free Synthetic Biology. , 2016, ACS synthetic biology.

[9]  Jennifer A. Doudna,et al.  High-throughput biochemical profiling reveals sequence determinants of dCas9 off-target binding and unbinding , 2017, Proceedings of the National Academy of Sciences.

[10]  C. Smolke,et al.  Complete biosynthesis of opioids in yeast , 2015, Science.

[11]  M. Segal An operating system for the biology lab , 2019, Nature.

[12]  Bradley C. Bundy,et al.  Lyophilized Escherichia coli-based cell-free systems for robust, high-density, long-term storage. , 2014, BioTechniques.

[13]  M. Stephenson,et al.  A soluble ribonucleic acid intermediate in protein synthesis. , 1958, The Journal of biological chemistry.

[14]  Yasuhiko Yoshida,et al.  Cell‐free production and stable‐isotope labeling of milligram quantities of proteins , 1999, FEBS letters.

[15]  J. Swartz,et al.  Enhancing multiple disulfide bonded protein folding in a cell‐free system , 2004, Biotechnology and bioengineering.

[16]  D. Frishman,et al.  Protein abundance profiling of the Escherichia coli cytosol , 2008, BMC Genomics.

[17]  Steffen Rupp,et al.  The E. coli S30 lysate proteome: A prototype for cell-free protein production. , 2018, New biotechnology.

[18]  Julius B. Lucks,et al.  Design and optimization of a cell-free atrazine biosensor. , 2020, ACS synthetic biology.

[19]  Nicole E. Gregorio,et al.  A User’s Guide to Cell-Free Protein Synthesis , 2019, Methods and protocols.

[20]  Feng Li,et al.  Cell culture processes for monoclonal antibody production , 2010, mAbs.

[21]  Genetically controlled membrane synthesis in liposomes , 2020, Nature communications.

[22]  Dong-Myung Kim,et al.  Efficient production of a bioactive, multiple disulfide‐bonded protein using modified extracts of Escherichia coli , 2004, Biotechnology and bioengineering.

[23]  Vincent Noireaux,et al.  Synchrony and pattern formation of coupled genetic oscillators on a chip of artificial cells , 2017, Proceedings of the National Academy of Sciences.

[24]  Eduardo D. Sontag,et al.  Translation inhibition and resource balance in the TX-TL cell-free gene expression system , 2017, Synthetic biology.

[25]  D. G. Gibson,et al.  Establishing a High-Yielding Cell-Free Protein Synthesis Platform Derived from Vibrio natriegens. , 2018, ACS synthetic biology.

[26]  M. Record,et al.  Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo. , 1991, Journal of molecular biology.

[27]  Nigel F. Reuel,et al.  Methods to reduce variability in E. Coli-based cell-free protein expression experiments , 2019, Synthetic and systems biotechnology.

[28]  Andrew Buchanan,et al.  Coping with complexity: Machine learning optimization of cell‐free protein synthesis , 2011, Biotechnology and Bioengineering.

[29]  Ryan A McClure,et al.  In Vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis. , 2017, ACS synthetic biology.

[30]  T. Peterson,et al.  Cell-free synthesis of a functional G protein-coupled receptor complexed with nanometer scale bilayer discs , 2011, BMC biotechnology.

[31]  R. Freedman,et al.  Cotranslational glycosylation of proteins in systems depleted of protein disulphide isomerase. , 1990, The EMBO journal.

[32]  C. J. Murray,et al.  Microscale to Manufacturing Scale-up of Cell-Free Cytokine Production—A New Approach for Shortening Protein Production Development Timelines , 2011, Biotechnology and bioengineering.

[33]  Eduardo D Sontag,et al.  In vitro implementation of robust gene regulation in a synthetic biomolecular integral controller , 2019, Nature Communications.

[34]  Mark A. Bedau,et al.  Automated Discovery of Novel Drug Formulations Using Predictive Iterated High Throughput Experimentation , 2010, PloS one.

[35]  B. Shen,et al.  The biosynthetic gene cluster for the anticancer drug bleomycin from Streptomyces verticillus ATCC15003 as a model for hybrid peptide–polyketide natural product biosynthesis , 2001, Journal of Industrial Microbiology and Biotechnology.

[36]  R G Kim,et al.  Expression-independent consumption of substrates in cell-free expression system from Escherichia coli. , 2000, Journal of biotechnology.

[37]  Michael C. Jewett,et al.  Establishing a high yielding streptomyces‐based cell‐free protein synthesis system , 2017, Biotechnology and bioengineering.

[38]  S. Maerkl,et al.  A partially self-regenerating synthetic cell , 2020, Nature Communications.

[39]  S. Chong,et al.  Protein Synthesis Using a Reconstituted Cell‐Free System , 2014, Current protocols in molecular biology.

[40]  Matthew W. Lux,et al.  Methodologies for preparation of prokaryotic extracts for cell-free expression systems , 2020, Synthetic and systems biotechnology.

[41]  D. Richardson,et al.  Accelerated pharmaceutical protein development with integrated cell free expression, purification, and bioconjugation , 2018, Scientific Reports.

[42]  E. Strychalski,et al.  CELL-FREE (comparable engineered living lysates for research education and entrepreneurship) workshop report , 2020 .

[43]  Stefan Kubick,et al.  Cell-Free Protein Synthesis: Pros and Cons of Prokaryotic and Eukaryotic Systems , 2015, Chembiochem : a European journal of chemical biology.

[44]  Nancy Kelley-Loughnane,et al.  Deconstructing Cell-Free Extract Preparation for in Vitro Activation of Transcriptional Genetic Circuitry. , 2018, ACS synthetic biology.

[45]  H. Mutschler,et al.  In vitro self-replication and multicistronic expression of large synthetic genomes , 2020, Nature Communications.

[46]  Sarah A. Munro,et al.  A minimum information standard for reproducing bench-scale bacterial cell growth and productivity , 2018, Communications Biology.

[47]  Vincent Noireaux,et al.  Short DNA containing χ sites enhances DNA stability and gene expression in E. coli cell-free transcription-translation systems. , 2017, Biotechnology and bioengineering.

[48]  P. Cluzel,et al.  Systematic characterization of maturation time of fluorescent proteins in living cells , 2017, Nature Methods.

[49]  F. Hollfelder,et al.  “NAD‐display”: Ultrahigh‐Throughput in Vitro Screening of NAD(H) Dehydrogenases Using Bead Display and Flow Cytometry , 2021, Angewandte Chemie.

[50]  Michele Forlin,et al.  Gene position more strongly influences cell-free protein expression from operons than T7 transcriptional promoter strength. , 2014, ACS synthetic biology.

[51]  Christophe Danelon,et al.  Self-replication of DNA by its encoded proteins in liposome-based synthetic cells , 2018, Nature Communications.

[52]  In vitro ribosome synthesis and evolution through ribosome display , 2020, Nature Communications.

[53]  J. Walker,et al.  Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. , 1996, Journal of molecular biology.

[54]  J. Swartz,et al.  Efficient and scalable method for scaling up cell free protein synthesis in batch mode. , 2005, Biotechnology and bioengineering.

[55]  J. Loo,et al.  Top-down/Bottom-up Mass Spectrometry Workflow Using Dissolvable Polyacrylamide Gels. , 2017, Analytical chemistry.

[56]  D. G. Gibson,et al.  Design and synthesis of a minimal bacterial genome , 2016, Science.

[57]  Chenguang Fan,et al.  Increasing the fidelity of noncanonical amino acid incorporation in cell-free protein synthesis. , 2017, Biochimica et biophysica acta. General subjects.

[58]  Tom Ellis,et al.  The second decade of synthetic biology: 2010–2020 , 2020, Nature Communications.

[59]  Shirley S Daube,et al.  Progress in programming spatiotemporal patterns and machine-assembly in cell-free protein expression systems. , 2017, Current opinion in chemical biology.

[60]  David W. Wood,et al.  Biosensing estrogenic endocrine disruptors in human blood and urine: A RAPID cell‐free protein synthesis approach , 2018, Toxicology and applied pharmacology.

[61]  Wilhelm Haas,et al.  Cogenerating Synthetic Parts toward a Self-Replicating System. , 2017, ACS synthetic biology.

[62]  V. Noireaux,et al.  Protecting linear DNA templates in cell-free expression systems from diverse bacteria. , 2020, ACS synthetic biology.

[63]  Bradley C. Bundy,et al.  Efficient disulfide bond formation in virus-like particles. , 2011, Journal of biotechnology.

[64]  A. Nakabachi,et al.  Diaphorin, a polyketide produced by a bacterial symbiont of the Asian citrus psyllid, kills various human cancer cells , 2019, PloS one.

[65]  Michele Forlin,et al.  Fluorescent proteins and in vitro genetic organization for cell-free synthetic biology. , 2013, ACS synthetic biology.

[66]  Gary Walsh,et al.  Biopharmaceutical benchmarks 2018 , 2018, Nature Biotechnology.

[67]  W. Vernon The role of magnesium in nucleic-acid and protein metabolism. , 1988, Magnesium.

[68]  Paul S. Freemont,et al.  Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology , 2013, Nucleic acids research.

[69]  Henrike Niederholtmeyer,et al.  Rapid cell-free forward engineering of novel genetic ring oscillators , 2015, eLife.

[70]  Christophe Danelon,et al.  Modelling cell-free RNA and protein synthesis with minimal systems , 2019, Physical biology.

[71]  Scott A. Walper,et al.  Quantification of Interlaboratory Cell-free Protein Synthesis Variability. , 2019, ACS synthetic biology.

[72]  E. Takashima,et al.  Application of wheat germ cell-free protein expression system for novel malaria vaccine candidate discovery , 2014, Expert review of vaccines.

[73]  Martin J. Aryee,et al.  GUIDE-Seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases , 2014, Nature Biotechnology.

[74]  Michael C Jewett,et al.  Development of a CHO-Based Cell-Free Platform for Synthesis of Active Monoclonal Antibodies. , 2017, ACS synthetic biology.

[75]  Bradley C. Bundy,et al.  Endotoxin-Free E. coli-Based Cell-Free Protein Synthesis: Pre-Expression Endotoxin Removal Approaches for on-Demand Cancer Therapeutic Production. , 2018, Biotechnology journal.

[76]  P. Schwille,et al.  Cell‐Free Protein Synthesis and Its Perspectives for Assembling Cells from the Bottom‐Up , 2019, Advanced biosystems.

[77]  Bradley C. Bundy,et al.  Cell‐free protein synthesis of a cytotoxic cancer therapeutic: Onconase production and a just‐add‐water cell‐free system , 2016, Biotechnology journal.

[78]  S. Maerkl,et al.  Bottom-Up Construction of Complex Biomolecular Systems With Cell-Free Synthetic Biology , 2020, Frontiers in Bioengineering and Biotechnology.

[79]  Vincent Noireaux,et al.  A detailed cell-free transcription-translation-based assay to decipher CRISPR protospacer-adjacent motifs. , 2018, Methods.

[80]  Vincent Noireaux,et al.  Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system. , 2014, Biochimie.

[81]  J. Joung,et al.  CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR-Cas9 nuclease off-targets , 2017, Nature Methods.

[82]  James R. Swartz,et al.  Production and stabilization of the trimeric influenza hemagglutinin stem domain for potentially broadly protective influenza vaccines , 2013, Proceedings of the National Academy of Sciences.

[83]  N. W. Davis,et al.  The complete genome sequence of Escherichia coli K-12. , 1997, Science.

[84]  Xun Tang,et al.  Distinct timescales of RNA regulators enable the construction of a genetic pulse generator , 2019, Biotechnology and bioengineering.

[85]  Y. Shimizu,et al.  In vitro reconstitution of functional small ribosomal subunit assembly for comprehensive analysis of ribosomal elements in E. coli , 2020, Communications Biology.

[86]  T. Reusch,et al.  From Electronic Sequence to Purified Protein Using Automated Gene Synthesis and In Vitro Transcription/Translation. , 2020, ACS synthetic biology.

[87]  M. Eisenstein Enzymatic DNA synthesis enters new phase , 2020, Nature Biotechnology.

[88]  David Garenne,et al.  Cell-free transcription-translation: engineering biology from the nanometer to the millimeter scale. , 2019, Current opinion in biotechnology.

[89]  Heidi Ledford Quest to use CRISPR against disease gains ground , 2020, Nature.

[90]  S. Jaffrey,et al.  RNA Mimics of Green Fluorescent Protein , 2011, Science.

[91]  Michael C. Jewett,et al.  High-throughput preparation methods of crude extract for robust cell-free protein synthesis , 2015, Scientific Reports.

[92]  N. Kapoor,et al.  Malaria Derived Glycosylphosphatidylinositol Anchor Enhances Anti-Pfs25 Functional Antibodies That Block Malaria Transmission , 2018, Biochemistry.

[93]  George M Church,et al.  Synthetic biology projects in vitro. , 2006, Genome research.

[94]  Kazufumi Hosoda,et al.  Robustness of a Reconstituted Escherichia coli Protein Translation System Analyzed by Computational Modeling. , 2018, ACS synthetic biology.

[95]  S V Matveev,et al.  Effect of the ATP level on the overall protein biosynthesis rate in a wheat germ cell-free system. , 1996, Biochimica et biophysica acta.

[96]  Daniel Bratton,et al.  An Integrated Device for Monitoring Time‐Dependent in vitro Expression From Single Genes in Picolitre Droplets , 2008, Chembiochem : a European journal of chemical biology.

[97]  V. Noireaux,et al.  Preparation of amino acid mixtures for cell-free expression systems. , 2015, BioTechniques.

[98]  Paul S. Freemont,et al.  Rapid acquisition and model-based analysis of cell-free transcription–translation reactions from nonmodel bacteria , 2018, Proceedings of the National Academy of Sciences.

[99]  James Chappell,et al.  A Cell-Free Biosensor for Detecting Quorum Sensing Molecules in P. aeruginosa-Infected Respiratory Samples. , 2017, ACS synthetic biology.

[100]  Takuya Ueda,et al.  Cell-free translation reconstituted with purified components , 2001, Nature Biotechnology.

[101]  Vincent Noireaux,et al.  Rapid and Scalable Characterization of CRISPR Technologies Using an E. coli Cell-Free Transcription-Translation System. , 2018, Molecular cell.

[102]  David Garenne,et al.  Characterization of the all-E. coli transcription-translation system myTXTL by mass spectrometry. , 2019, Rapid communications in mass spectrometry : RCM.

[103]  K. Woodrow,et al.  Rapid expression of functional genomic libraries. , 2006, Journal of proteome research.

[104]  Richard M. Murray,et al.  Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems , 2014, ACS synthetic biology.

[105]  Kyle E. Watters,et al.  Systematic discovery of natural CRISPR-Cas12a inhibitors , 2018, Science.

[106]  M. Kainosho,et al.  Cell-free protein production for NMR studies. , 2012, Methods in molecular biology.

[107]  S. Kubick,et al.  Cell-free synthesis of functional thermostable direct hemolysins of Vibrio parahaemolyticus. , 2013, Toxicon : official journal of the International Society on Toxinology.

[108]  John T Elliott,et al.  How measurement science can improve confidence in research results , 2018, PLoS biology.

[109]  J. M. Castellano,et al.  Cell‐free protein synthesis and purification of human dopamine D2 receptor long isoform , 2013, Biotechnology progress.

[110]  Tetsuya Yomo,et al.  Self-replication of circular DNA by a self-encoded DNA polymerase through rolling-circle replication and recombination , 2018, Scientific Reports.

[111]  Daniel Wrapp,et al.  Site-specific glycan analysis of the SARS-CoV-2 spike , 2020, Science.

[112]  Edward S Boyden,et al.  Engineering genetic circuit interactions within and between synthetic minimal cells , 2016, Nature chemistry.

[113]  P G Schultz,et al.  A general method for site-specific incorporation of unnatural amino acids into proteins. , 1989, Science.

[114]  Vincent Noireaux,et al.  Genome replication, synthesis, and assembly of the bacteriophage T7 in a single cell-free reaction. , 2012, ACS synthetic biology.

[115]  Annika Müller-Lucks,et al.  Fluorescent In Situ Folding Control for Rapid Optimization of Cell-Free Membrane Protein Synthesis , 2012, PloS one.

[116]  Ashty S. Karim,et al.  Cell-free prototyping of limonene biosynthesis using cell-free protein synthesis. , 2020, Metabolic engineering.

[117]  Carrie Arnold,et al.  Who shrank the drug factory? Briefcase-sized labs could transform medicine , 2019, Nature.

[118]  D. Söll,et al.  Expanding the Genetic Code of Escherichia coli with Phosphoserine , 2011, Science.

[119]  Kazufumi Hosoda,et al.  Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling , 2017, Proceedings of the National Academy of Sciences.

[120]  F. Simmel,et al.  Towards synthetic cells using peptide-based reaction compartments , 2018, Nature Communications.

[121]  A. Moya,et al.  Determination of the Core of a Minimal Bacterial Gene Set , 2004, Microbiology and Molecular Biology Reviews.

[122]  Kara Calhoun,et al.  Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis. , 2018, ACS synthetic biology.

[123]  Sarah A. Munro,et al.  A minimum information standard for reproducing bench-scale bacterial cell growth and productivity , 2018, Communications Biology.

[124]  Paul S Freemont,et al.  Combinatorial metabolic pathway assembly approaches and toolkits for modular assembly. , 2020, Metabolic engineering.

[125]  Colette J. Whitfield,et al.  Cell-free protein synthesis in hydrogel materials. , 2020, Chemical communications.

[126]  Grigory S. Filonov,et al.  Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution , 2014, Journal of the American Chemical Society.

[127]  A. Spirin,et al.  Cell-free synthesis and affinity isolation of proteins on a nanomole scale. , 2000, BioTechniques.

[128]  Kazuo Harada,et al.  Paper-based colorimetric biosensor for antibiotics inhibiting bacterial protein synthesis. , 2017, Journal of bioscience and bioengineering.

[129]  Vincent Noireaux,et al.  Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system. , 2014, ACS synthetic biology.

[130]  M. Heymann,et al.  Cell-free expression of RNA encoded genes using MS2 replicase , 2019, Nucleic acids research.

[131]  Douglas C. Friedman,et al.  Building a global alliance of biofoundries , 2019, Nature Communications.

[132]  Michael C. Jewett,et al.  BioBits™ Bright: A fluorescent synthetic biology education kit , 2018, Science Advances.

[133]  Walter Hunziker,et al.  Proteopolymersomes: in vitro production of a membrane protein in polymersome membranes. , 2011, Biointerphases.

[134]  M. Borucki,et al.  Revival and identification of bacterial spores in 25- to 40-million-year-old Dominican amber. , 1995, Science.

[135]  Christopher A. Voigt,et al.  Synthetic biology 2020–2030: six commercially-available products that are changing our world , 2020, Nature Communications.

[136]  Farren J. Isaacs,et al.  Robust production of recombinant phosphoproteins using cell-free protein synthesis , 2015, Nature Communications.

[137]  G. Patterson,et al.  Use of the green fluorescent protein and its mutants in quantitative fluorescence microscopy. , 1997, Biophysical journal.

[138]  C. J. Murray,et al.  RF1 attenuation enables efficient non-natural amino acid incorporation for production of homogeneous antibody drug conjugates , 2017, Scientific Reports.

[139]  V. Erdmann,et al.  An Improved Protein Bioreactor , 2002, Molecular & Cellular Proteomics.

[140]  Djork-Arné Clevert,et al.  De novo generation of hit-like molecules from gene expression signatures using artificial intelligence , 2020, Nature Communications.

[141]  C. J. Murray,et al.  Aglycosylated antibodies and antibody fragments produced in a scalable in vitro transcription-translation system , 2012, mAbs.

[142]  James J. Collins,et al.  Portable, On-Demand Biomolecular Manufacturing , 2016, Cell.

[143]  Bastian Blombach,et al.  Cell-Free Protein Synthesis From Fast-Growing Vibrio natriegens , 2018, Front. Microbiol..

[144]  J. Swartz,et al.  Development of cell‐free protein synthesis platforms for disulfide bonded proteins , 2008, Biotechnology and bioengineering.

[145]  Mathilde Koch,et al.  Large scale active-learning-guided exploration for in vitro protein production optimization , 2020, Nature Communications.

[146]  J. Collins,et al.  Programmable cells: interfacing natural and engineered gene networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[147]  James J. Collins,et al.  Paper-Based Synthetic Gene Networks , 2014, Cell.

[148]  Vincent Noireaux,et al.  Quantitative modeling of transcription and translation of an all-E. coli cell-free system , 2019, Scientific Reports.

[149]  J. Davies,et al.  Automation in the Life Science Research Laboratory , 2020, Frontiers in Bioengineering and Biotechnology.

[150]  Bradley C. Bundy,et al.  The incorporation of the A2 protein to produce novel Qβ virus‐like particles using cell‐free protein synthesis , 2012, Biotechnology progress.

[151]  Richard M. Murray,et al.  Biomolecular resource utilization in elementary cell-free gene circuits , 2013, 2013 American Control Conference.

[152]  J. Swartz,et al.  Evidence for an additional disulfide reduction pathway in Escherichia coli. , 2007, Journal of bioscience and bioengineering.

[153]  Shane T. Grosser,et al.  Design of an in vitro biocatalytic cascade for the manufacture of islatravir , 2019, Science.

[154]  Milan Mrksich,et al.  Author Correction: Single-pot glycoprotein biosynthesis using a cell-free transcription-translation system enriched with glycosylation machinery , 2018, Nature Communications.

[155]  Michael C. Jewett,et al.  Cell-free Protein Synthesis from a Release Factor 1 Deficient Escherichia coli Activates Efficient and Multiple Site-specific Nonstandard Amino Acid Incorporation , 2013, ACS synthetic biology.

[156]  Daniel G. Bracewell,et al.  Improving the reaction mix of a Pichia pastoris cell-free system using a design of experiments approach to minimise experimental effort , 2020, Synthetic and systems biotechnology.

[157]  D. Kolpashchikov Binary malachite green aptamer for fluorescent detection of nucleic acids. , 2005, Journal of the American Chemical Society.

[158]  Zachary Z. Sun,et al.  Characterizing and prototyping genetic networks with cell-free transcription-translation reactions. , 2015, Methods.

[159]  Xudong Ge,et al.  Point-of-care production of therapeutic proteins of good-manufacturing-practice quality , 2018, Nature Biomedical Engineering.

[160]  Vincent Noireaux,et al.  A vesicle bioreactor as a step toward an artificial cell assembly. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[161]  A. Spirin,et al.  Cell-free production of biologically active polypeptides: application to the synthesis of antibacterial peptide cecropin. , 2001, Protein expression and purification.

[162]  V. Dötsch,et al.  Artificial Environments for the Co-Translational Stabilization of Cell-Free Expressed Proteins , 2013, PloS one.

[163]  Geoffrey Chang,et al.  The past, present and future of cell-free protein synthesis. , 2005, Trends in biotechnology.

[164]  N. Dixon,et al.  Cell‐free synthesis of 15N‐labeled proteins for NMR studies , 2005, IUBMB life.

[165]  A. Halayko,et al.  Quantitative densitometry of proteins stained with Coomassie Blue using a Hewlett Packard scanjet scanner and Scanplot software , 1997, Electrophoresis.

[166]  J. Douthwaite,et al.  Highly efficient ribosome display selection by use of purified components for in vitro translation. , 2006, Journal of immunological methods.

[167]  M. DeLisa,et al.  A prokaryote-based cell-free translation system that efficiently synthesizes glycoproteins. , 2012, Glycobiology.

[168]  T. Ueda,et al.  Artificial photosynthetic cell producing energy for protein synthesis , 2019, Nature Communications.

[169]  T. Terwilliger,et al.  Engineering and characterization of a superfolder green fluorescent protein , 2006, Nature Biotechnology.

[170]  G. Coukos,et al.  A computationally designed chimeric antigen receptor provides a small-molecule safety switch for T-cell therapy , 2020, Nature Biotechnology.

[171]  Marshall Nirenberg,et al.  Historical review: Deciphering the genetic code--a personal account. , 2004, Trends in biochemical sciences.

[172]  K. Janda,et al.  Toward implementation of quorum sensing autoinducers as biomarkers for infectious disease states. , 2013, Analytical chemistry.

[173]  A. Marco Strategies for successful recombinant expression of disulfide bond-dependent proteins in Escherichia coli. , 2009 .

[174]  G. Zubay,et al.  In vitro synthesis of protein in microbial systems. , 1973, Annual review of genetics.

[175]  V. Noireaux,et al.  An E. coli cell-free expression toolbox: application to synthetic gene circuits and artificial cells. , 2012, ACS synthetic biology.

[176]  Paul S. Freemont,et al.  Biological Materials: The Next Frontier for Cell-Free Synthetic Biology , 2020, Frontiers in Bioengineering and Biotechnology.

[177]  Bradley C. Bundy,et al.  Thermostable lyoprotectant-enhanced cell-free protein synthesis for on-demand endotoxin-free therapeutic production. , 2019, New biotechnology.

[178]  S. N. Lai,et al.  Artificial Cells Capable of Long-Lived Protein Synthesis by Using Aptamer Grafted Polymer Hydrogel. , 2019, ACS synthetic biology.

[179]  R. Bar-Ziv,et al.  Electric-Field Manipulation of a Compartmentalized Cell-Free Gene Expression Reaction. , 2018, ACS synthetic biology.

[180]  Michele Forlin,et al.  Cell-Free Translation Is More Variable than Transcription. , 2017, ACS synthetic biology.

[181]  Michael C Jewett,et al.  Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids , 2018, Nature Communications.

[182]  Adam D. Silverman,et al.  Cell-free gene expression: an expanded repertoire of applications , 2019, Nature Reviews Genetics.

[183]  A. Schreiber,et al.  Prebiotic Protocell Model Based on Dynamic Protein Membranes Accommodating Anabolic Reactions. , 2019, Langmuir : the ACS journal of surfaces and colloids.

[184]  Vincent Noireaux,et al.  Cell-free TXTL synthesis of infectious bacteriophage T4 in a single test tube reaction , 2018, Synthetic biology.

[185]  Stefan Schillberg,et al.  A versatile coupled cell‐free transcription–translation system based on tobacco BY‐2 cell lysates , 2015, Biotechnology and bioengineering.

[186]  J. Varner,et al.  Toward a genome scale sequence specific dynamic model of cell-free protein synthesis in Escherichia coli , 2017, bioRxiv.

[187]  Vincent Noireaux,et al.  From deterministic to fuzzy decision-making in artificial cells , 2020, Nature Communications.

[188]  Michael C. Jewett,et al.  BioBits™ Explorer: A modular synthetic biology education kit , 2018, Science Advances.

[189]  P. Freemont,et al.  Development of a Bacillus subtilis cell-free transcription-translation system for prototyping regulatory elements. , 2016, Metabolic engineering.

[190]  Vincent Noireaux,et al.  Programmable on-chip DNA compartments as artificial cells , 2014, Science.

[191]  Neha P Kamat,et al.  Engineering Polymersome Protocells. , 2011, The journal of physical chemistry letters.

[192]  V. Noireaux,et al.  Genetically expanded cell‐free protein synthesis using endogenous pyrrolysyl orthogonal translation system , 2015, Biotechnology and bioengineering.

[193]  Vincent Noireaux,et al.  Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70 , 2010, Journal of biological engineering.

[194]  J. Swartz,et al.  Effects of growth rate on cell extract performance in cell‐free protein synthesis , 2006, Biotechnology and bioengineering.

[195]  Monica P. McNerney,et al.  Point-of-care biomarker quantification enabled by sample-specific calibration , 2019, Science Advances.