A Numerical Representation of DNA Sequences and Its Applications

We introduced a sort of numerical coding method of DNA sequences. Based on this representation, we can reduce a DNA sequence into three binary digit sequence. Associating with the proposed coding rules, we can judge the mutation between bases and make sequence alignment easily.

[1]  A. Nandy,et al.  A new graphical representation and analysis of DNA sequence structure. I: Methodology and application to globin genes , 1994 .

[2]  A. Nandy,et al.  GRAPHICAL ANALYSIS OF DNA SEQUENCE STRUCTURE. II: RELATIVE ABUNDANCES OF NUCLEOTIDES IN DNAS, GENE EVOLUTION AND DUPLICATION , 1995 .

[3]  Marjan Vracko,et al.  Compact 2-D graphical representation of DNA , 2003 .

[4]  Dejan Plavšić,et al.  Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation , 2003 .

[5]  Dejan Plavšić,et al.  Novel 2-D graphical representation of DNA sequences and their numerical characterization , 2003 .

[6]  Milan Randić,et al.  Graphical representations of DNA as 2-D map , 2004 .

[7]  Bo Liao,et al.  Analysis of similarity/dissimilarity of DNA sequences based on 3-D graphical representation , 2004 .

[8]  Tianming Wang,et al.  3-D graphical representation of DNA sequences and their numerical characterization , 2004 .

[9]  Bo Liao,et al.  A 2D graphical representation of DNA sequence , 2005 .

[10]  Bo Liao,et al.  Graphical approach to analyzing DNA sequences , 2005, J. Comput. Chem..

[11]  Dejan Plavšić,et al.  A novel unexpected use of a graphical representation of DNA : Graphical alignment of DNA sequences , 2006 .

[12]  Yuhua Yao,et al.  A new 2D graphical representation—Classification curve and the analysis of similarity/dissimilarity of DNA sequences , 2006 .

[13]  Bo Liao,et al.  A 3D graphical representation of DNA sequences and its application , 2006, Theor. Comput. Sci..

[14]  Timothy Clark,et al.  2D-dynamic representation of DNA sequences , 2007 .

[15]  Wieslaw Nowak,et al.  Distribution moments of 2D-graphs as descriptors of DNA sequences , 2007 .

[16]  Piotr Waz,et al.  Similarity studies of DNA sequences using genetic methods , 2007 .

[17]  Guohua Huang,et al.  A Novel Method for Sequence Alignment and Mutation Analysis , 2008 .