Investigating the genetic diversity and differentiation patterns in the Penstemon scariosus species complex under different sample sizes using AFLPs and SSRs
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M. Robbins | A. Wolfe | M. R. Stevens | L. Johnson | Robert L. Johnson | Leigh A. Johnson | N. Ricks | Chris D. Anderson | K. M. Farley | Rosa A. Rodriguez-Peña
[1] M. Pooler,et al. Genetic diversity of Magnolia ashei characterized by SSR markers , 2018, Conservation Genetics.
[2] P. Taberlet,et al. High‐throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low‐quantity and degraded DNA , 2017, Molecular ecology resources.
[3] Nancy F. Chen,et al. A comparative assessment of SNP and microsatellite markers for assigning parentage in a socially monogamous bird , 2017, Molecular ecology resources.
[4] Paul D. Blischak,et al. Population genetics of Penstemon albomarginatus (Plantaginaceae), a rare Mojave Desert species of conservation concern , 2016, Conservation Genetics.
[5] S. Puechmaille. The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem , 2016, Molecular ecology resources.
[6] P. Bourke,et al. AFLP analysis of genetic diversity and phylogenetic relationships of Brassica oleracea in Ireland. , 2016, Comptes rendus biologies.
[7] Rita Costa,et al. Comparison of RAPD, ISSR, and AFLP Molecular Markers to Reveal and Classify Orchardgrass (Dactylis glomerata L.) Germplasm Variations , 2016, PloS one.
[8] M. R. Stevens,et al. Identification and characterization of microsatellite markers in Penstemon scariosus (Plantaginaceae)1 , 2016, Applications in Plant Sciences.
[9] J. Levinton,et al. Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes , 2016, Molecular ecology.
[10] L. Eguiarte,et al. Peripatric speciation of an endemic species driven by Pleistocene climate change: The case of the Mexican prairie dog (Cynomys mexicanus). , 2016, Molecular phylogenetics and evolution.
[11] P. Ehrlich,et al. Accelerated modern human–induced species losses: Entering the sixth mass extinction , 2015, Science Advances.
[12] M. Craig,et al. Contribution of genetics to ecological restoration , 2015, Molecular ecology.
[13] J. Francisco‐Ortega,et al. Genetic diversity and differentiation of Pseudophoenix (Arecaceae) in Hispaniola , 2014 .
[14] I. Carbone,et al. Challenges in analysis and interpretation of microsatellite data for population genetic studies , 2014, Ecology and evolution.
[15] Micheline Manseau,et al. MEMGENE: Spatial pattern detection in genetic distance data , 2014 .
[16] L. Kubatko,et al. Conservation genetics and breeding system of Penstemon debilis (Plantaginaceae), a rare beardtongue endemic to oil shale talus in western Colorado, USA , 2014 .
[17] J. Francisco‐Ortega,et al. Conservation and genetics of two Critically Endangered Hispaniolan palms: genetic erosion of Pseudophoenix lediniana in contrast to P. ekmanii , 2014, Plant Systematics and Evolution.
[18] P. J. Maughan,et al. Developing molecular tools and insights into the Penstemon genome using genomic reduction and next-generation sequencing , 2013, BMC Genetics.
[19] M. Smulders,et al. AFLP-based population structure analysis as a means to validate the complex taxonomy of dogroses (Rosa section Caninae). , 2013, Molecular phylogenetics and evolution.
[20] N. Bassil,et al. Discrimination of American Cranberry Cultivars and Assessment of Clonal Heterogeneity Using Microsatellite Markers , 2013, Plant Molecular Biology Reporter.
[21] A. Oleksa,et al. Isolation by distance in saproxylic beetles may increase with niche specialization , 2013, Journal of Insect Conservation.
[22] Anete P. Souza,et al. Species boundaries inferred from microsatellite markers in the Kielmeyera coriacea complex (Calophyllaceae) and evidence of asymmetric hybridization , 2013, Plant Systematics and Evolution.
[23] T. Burg,et al. Sampling for Microsatellite-Based Population Genetic Studies: 25 to 30 Individuals per Population Is Enough to Accurately Estimate Allele Frequencies , 2012, PloS one.
[24] Rod Peakall,et al. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update , 2012, Bioinform..
[25] Theunis Piersma,et al. The interplay between habitat availability and population differentiation , 2012 .
[26] B. vonHoldt,et al. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method , 2012, Conservation Genetics Resources.
[27] W. Durka,et al. Assessment of provenance delineation by genetic differentiation patterns and estimates of gene flow in the common grassland plant Geranium pratense , 2012, Conservation Genetics.
[28] A. Oleksa,et al. Increased inbreeding and strong kinship structure in Taxus baccata estimated from both AFLP and SSR data , 2011, Heredity.
[29] M. Rai,et al. Microsatellite markers: an overview of the recent progress in plants , 2011, Euphytica.
[30] Antoine Guisan,et al. Overcoming the rare species modelling paradox: a novel hierarchical framework applied to an Iberian endemic plant. , 2010 .
[31] G. Luikart,et al. Genomics and the future of conservation genetics , 2010, Nature Reviews Genetics.
[32] L. Excoffier,et al. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows , 2010, Molecular ecology resources.
[33] Nicholas G. Crawford,et al. smogd: software for the measurement of genetic diversity , 2010, Molecular ecology resources.
[34] Jonathan D. Ballou,et al. Introduction to Conservation Genetics: Frontmatter , 2010 .
[35] O. Rajora,et al. A simple method for estimating genetic diversity in large populations from finite sample sizes , 2009, BMC Genetics.
[36] M. Pärtel,et al. Human influence lowers plant genetic diversity in communities with extinction debt , 2009 .
[37] R. Hobbs,et al. Sample Size Effects on Estimates of Population Genetic Structure: Implications for Ecological Restoration , 2009 .
[38] A. Townsend Peterson,et al. Something from nothing: Using landscape similarity and ecological niche modeling to find rare plant species , 2009 .
[39] M. Quesada,et al. Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches , 2008, Molecular ecology.
[40] L. Jost. GST and its relatives do not measure differentiation , 2008, Molecular ecology.
[41] H. Padh,et al. Advances in molecular marker techniques and their applications in plant sciences , 2008, Plant Cell Reports.
[42] F. Rousset. genepop’007: a complete re‐implementation of the genepop software for Windows and Linux , 2008, Molecular ecology resources.
[43] J. Fant,et al. Isolation and characterization of microsatellite loci in Penstemon rostriflorus (Plantaginaceae) and cross‐species amplification , 2007 .
[44] Noah A. Rosenberg,et al. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure , 2007, Bioinform..
[45] V. Tepedino,et al. BREEDING BIOLOGY AND FLOWER VISITORS OF THE RARE WHITE RIVER PENSTEMON, PENSTEMON SCARIOSUS VAR. ALBIFLUVIS (SCROPHULARIACEAE) , 2007 .
[46] Pedro Jordano,et al. Can Population Genetic Structure Be Predicted from Life‐History Traits? , 2007, The American Naturalist.
[47] Heidi M. Meudt,et al. Almost forgotten or latest practice? AFLP applications, analyses and advances. , 2007, Trends in plant science.
[48] R. Borgstrøm,et al. A comparison of AFLPs and microsatellites to identify the population structure of brown trout (Salmo trutta L.) populations from Hardangervidda, Norway , 2007, Molecular ecology.
[49] J. Peñuelas,et al. Extensive spatial genetic structure revealed by AFLP but not SSR molecular markers in the wind‐pollinated tree, Fagus sylvatica , 2006, Molecular ecology.
[50] C. P. Randle,et al. Phylogeny, taxonomic affinities, and biogeography of Penstemon (Plantaginaceae) based on ITS and cpDNA sequence data. , 2006, American journal of botany.
[51] A. Lehmann,et al. Using Niche‐Based Models to Improve the Sampling of Rare Species , 2006, Conservation biology : the journal of the Society for Conservation Biology.
[52] P. Smouse,et al. genalex 6: genetic analysis in Excel. Population genetic software for teaching and research , 2006 .
[53] N. J. Ouborg,et al. The rough edges of the conservation genetics paradigm for plants , 2006 .
[54] R. Margis,et al. Optimal sampling strategy for estimation of spatial genetic structure in tree populations , 2005, Heredity.
[55] G. Evanno,et al. Detecting the number of clusters of individuals using the software structure: a simulation study , 2005, Molecular ecology.
[56] S. Kalinowski,et al. Do polymorphic loci require large sample sizes to estimate genetic distances? , 2005, Heredity.
[57] A. Lowe,et al. Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees , 2005, Heredity.
[58] R. Frankham,et al. Most species are not driven to extinction before genetic factors impact them. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[59] I. Geraldi,et al. Comparison of RAPD, RFLP, AFLP and SSR markers for diversity studies in tropical maize inbred lines , 2004 .
[60] C. Oosterhout,et al. Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data , 2004 .
[61] S. Manel,et al. Genetic diversity and differentiation in Eryngium alpinum L. (Apiaceae): comparison of AFLP and microsatellite markers , 2004, Heredity.
[62] F. Gugerli,et al. Low RAPD Variation and Female-Biased Sex Ratio Indicate Genetic Drift in Small Populations of the Dioecious Conifer Taxus Baccata in Switzerland , 2004, Conservation Genetics.
[63] H. Ellegren. Microsatellites: simple sequences with complex evolution , 2004, Nature Reviews Genetics.
[64] Michele Morgante,et al. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis , 1996, Molecular Breeding.
[65] L. Sola,et al. AFLP and microsatellites as genetic tags to identify cultured gilthead seabream escapees: data from a simulated floating cage breaking event , 2004, Aquaculture International.
[66] N. Rosenberg. distruct: a program for the graphical display of population structure , 2003 .
[67] M. Stephens,et al. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.
[68] Pierre Duchesne,et al. AFLP utility for population assignment studies: analytical investigation and empirical comparison with microsatellites , 2003, Molecular ecology.
[69] Richard Frankham,et al. Contribution of inbreeding to extinction risk in threatened species , 2002 .
[70] R. Frankham,et al. Introduction to Conservation Genetics , 2002 .
[71] I. Roldán‐Ruiz,et al. Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size , 2002, Molecular ecology.
[72] R. Peakall,et al. Comparative analysis of genetic diversity in the mangrove species Avicennia marina (Forsk.) Vierh. (Avicenniaceae) detected by AFLPs and SSRs , 2002, Theoretical and Applied Genetics.
[73] M. Waycott,et al. AFLP diversity within and between populations of the Caribbean seagrass Thalassia testudinum (Hydrocharitaceae) , 2001 .
[74] P. Donnelly,et al. Inference of population structure using multilocus genotype data. , 2000, Genetics.
[75] P. Sunnucks,et al. Efficient genetic markers for population biology. , 2000, Trends in ecology & evolution.
[76] P. Raven,et al. Biodiversity: Extinction by numbers , 2000, Nature.
[77] H. Nybom,et al. Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants , 2000 .
[78] M. Feldman,et al. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. , 1999, Molecular biology and evolution.
[79] D. Wilcove,et al. QUANTIFYING THREATS TO IMPERILED SPECIES IN THE UNITED STATES , 1998 .
[80] I. Hanski,et al. Inbreeding and extinction in a butterfly metapopulation , 1998, Nature.
[81] Dara Newman,et al. INCREASED PROBABILITY OF EXTINCTION DUE TO DECREASED GENETIC EFFECTIVE POPULATION SIZE: EXPERIMENTAL POPULATIONS OF CLARKIA PULCHELLA , 1997, Evolution; international journal of organic evolution.
[82] T. Brown,et al. The population genetic consequences of habitat fragmentation for plants. , 1996, Trends in ecology & evolution.
[83] P. Jarne,et al. Microsatellites, from molecules to populations and back. , 1996, Trends in ecology & evolution.
[84] J. Hamrick,et al. Effects of life history traits on genetic diversity in plant species , 1996 .
[85] Roderic D. M. Page,et al. TreeView: an application to display phylogenetic trees on personal computers , 1996, Comput. Appl. Biosci..
[86] L. Vodkin,et al. Duplications That Suppress and Deletions That Restore Expression from a Chalcone Synthase Multigene Family. , 1996, The Plant cell.
[87] M. Lynch,et al. Mutation Accumulation and the Extinction of Small Populations , 1995, The American Naturalist.
[88] P. Vos,et al. AFLP: a new technique for DNA fingerprinting. , 1995, Nucleic acids research.
[89] M. Morgante,et al. PCR-amplified microsatellites as markers in plant genetics. , 1993, The Plant journal : for cell and molecular biology.
[90] E. Thompson,et al. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. , 1992, Biometrics.
[91] N. Ellstrand. Gene flow by pollen: implications for plant conservation genetics , 1992 .
[92] U. Fish. Endangered and threatened wildlife and plants , 1987 .
[93] E. Neese. New taxa and nomenclatural changes in Utah Penstemon (Scrophulariaceae) , 1986 .
[94] B. Weir,et al. ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE , 1984, Evolution; international journal of organic evolution.
[95] J. L. England. A new species of Penstemon (Scrophulariaceae) from the Uinta Basin of Utah and Colorado , 1982 .
[96] N. Holmgren,et al. Intermountain Flora; Vascular Plants of the Intermountain West, U.S.A., , 1977 .
[97] L. Cavalli-Sforza,et al. PHYLOGENETIC ANALYSIS: MODELS AND ESTIMATION PROCEDURES , 1967, Evolution; international journal of organic evolution.
[98] S WRIGHT,et al. Genetical structure of populations. , 1950, Nature.
[99] F. W. Pennell. Scrophulariaceae of the central Rocky mountain states , 1920 .