Mass Spectrometry Strategies for Clinical Metabolomics and Lipidomics in Psychiatry, Neurology, and Neuro-Oncology

Metabolomics research has the potential to provide biomarkers for the detection of disease, for subtyping complex disease populations, for monitoring disease progression and therapy, and for defining new molecular targets for therapeutic intervention. These potentials are far from being realized because of a number of technical, conceptual, financial, and bioinformatics issues. Mass spectrometry provides analytical platforms that address the technical barriers to success in metabolomics research; however, the limited commercial availability of analytical and stable isotope standards has created a bottleneck for the absolute quantitation of a number of metabolites. Conceptual and financial factors contribute to the generation of statistically under-powered clinical studies, whereas bioinformatics issues result in the publication of a large number of unidentified metabolites. The path forward in this field involves targeted metabolomics analyses of large control and patient populations to define both the normal range of a defined metabolite and the potential heterogeneity (eg, bimodal) in complex patient populations. This approach requires that metabolomics research groups, in addition to developing a number of analytical platforms, build sufficient chemistry resources to supply the analytical standards required for absolute metabolite quantitation. Examples of metabolomics evaluations of sulfur amino-acid metabolism in psychiatry, neurology, and neuro-oncology and of lipidomics in neurology will be reviewed.

[1]  L. Al-Ayadhi,et al.  Role of proteomics in the discovery of autism biomarkers. , 2013, Journal of the College of Physicians and Surgeons--Pakistan : JCPSP.

[2]  F. Pedata,et al.  Extracellular Levels of Amino Acids and Choline in Human High Grade Gliomas: An Intraoperative Microdialysis Study , 2004, Neurochemical Research.

[3]  Ganghua Tang,et al.  S-11C-Methyl-L-Cysteine: A New Amino Acid PET Tracer for Cancer Imaging , 2011, The Journal of Nuclear Medicine.

[4]  Ian A Blair,et al.  Stable-isotope dilution LC–MS for quantitative biomarker analysis. , 2010, Bioanalysis.

[5]  A. Lajtha,et al.  An upregulation of DNA-methyltransferase 1 and 3a expressed in telencephalic GABAergic neurons of schizophrenia patients is also detected in peripheral blood lymphocytes , 2009, Schizophrenia Research.

[6]  Benjamin A Garcia,et al.  Breaking the histone code with quantitative mass spectrometry , 2011, Expert review of proteomics.

[7]  Anthony D. Postle Lipidomics , 2012, Current opinion in clinical nutrition and metabolic care.

[8]  C. Sweeley,et al.  Automated metabolic profiling of organic acids in human urine. I. Description of methods. , 1978, Clinical chemistry.

[9]  R. Kahn,et al.  Homocysteine, methylenetetrahydrofolate reductase and risk of schizophrenia: a meta-analysis , 2006, Molecular Psychiatry.

[10]  Michael I. Miller,et al.  Plasma ceramides are altered in mild cognitive impairment and predict cognitive decline and hippocampal volume loss , 2010, Alzheimer's & Dementia.

[11]  E. Fukusaki,et al.  Application of electrospray ionization ion trap/time-of-flight mass spectrometry for chemically-synthesized small RNAs. , 2012, Journal of bioscience and bioengineering.

[12]  A. Guidotti,et al.  GABAergic promoter hypermethylation as a model to study the neurochemistry of schizophrenia vulnerability , 2009, Expert review of neurotherapeutics.

[13]  R. Kraftsik,et al.  Genetic dysregulation of glutathione synthesis predicts alteration of plasma thiol redox status in schizophrenia. , 2011, Antioxidants & redox signaling.

[14]  T Koal,et al.  Challenges in mass spectrometry based targeted metabolomics. , 2010, Current molecular medicine.

[15]  M. Mann,et al.  Electrospray Ionization for Mass Spectrometry of Large Biomolecules , 1990 .

[16]  Xianlin Han,et al.  Substantial sulfatide deficiency and ceramide elevation in very early Alzheimer's disease: potential role in disease pathogenesis , 2002, Journal of neurochemistry.

[17]  Xianlin Han,et al.  Metabolomics in Early Alzheimer's Disease: Identification of Altered Plasma Sphingolipidome Using Shotgun Lipidomics , 2011, PloS one.

[18]  C. Sweeley,et al.  Quantitative metabolic profiling based on gas chromatography. , 1978, Clinical chemistry.

[19]  S. Moon,et al.  Serum Homocysteine and Folate Levels in Korean Schizophrenic Patients , 2011, Psychiatry investigation.

[20]  David A. Geier,et al.  A Clinical and Laboratory Evaluation of Methionine Cycle-Transsulfuration and Androgen Pathway Markers in Children with Autistic Disorders , 2006, Hormone Research in Paediatrics.

[21]  I. Altuntaş,et al.  Erythrocyte Superoxide Dismutase and Glutathione Peroxidase Activities, and Malondialdehyde and Reduced Glutathione Levels in Schizophrenic Patients , 2000, Clinical chemistry and laboratory medicine.

[22]  David W Gaylor,et al.  Metabolic biomarkers of increased oxidative stress and impaired methylation capacity in children with autism. , 2004, The American journal of clinical nutrition.

[23]  Julie A. Wood,et al.  Circulating plasmalogen levels and Alzheimer Disease Assessment Scale-Cognitive scores in Alzheimer patients. , 2010, Journal of psychiatry & neuroscience : JPN.

[24]  D. Garbe‐Schönberg,et al.  Reduction of N(ω)-hydroxy-L-arginine by the mitochondrial amidoxime reducing component (mARC). , 2011, The Biochemical journal.

[25]  P. Wood,et al.  Constant infusion of [13C6]glucose: Simultaneous measurement of turnover of GABA and glutamate in defined regions of the brain of individual animals , 1988, Neuropharmacology.

[26]  里井 斉,et al.  Astroglial expression of ceramide in Alzheimer's disease brains : a role during neuronal apoptosis , 2005 .

[27]  M. Mattson,et al.  Involvement of oxidative stress-induced abnormalities in ceramide and cholesterol metabolism in brain aging and Alzheimer's disease , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[28]  R. Caprioli,et al.  Specific molecular mass detection of endogenously released neuropeptides using in vivo microdialysis/mass spectrometry , 1995, Journal of Neuroscience Methods.

[29]  T. Hartmann,et al.  Plasmalogen synthesis is regulated via alkyl‐dihydroxyacetonephosphate‐synthase by amyloid precursor protein processing and is affected in Alzheimer’s disease , 2011, Journal of neurochemistry.

[30]  P. Andersen,et al.  Disease-Related Changes in the Cerebrospinal Fluid Metabolome in Amyotrophic Lateral Sclerosis Detected by GC/TOFMS , 2011, PloS one.

[31]  Rainer Breitling,et al.  Stable Isotope-Assisted Metabolomics for Network-Wide Metabolic Pathway Elucidation , 2012, Analytical chemistry.

[32]  Andreas Keller,et al.  A specific miRNA signature in the peripheral blood of glioblastoma patients , 2011, Journal of neurochemistry.

[33]  B. Blaisdell,et al.  Automated metabolic profiling of organic acids in human urine. II. Analysis of urine samples from "healthy" adults, sick children, and children with neuroblastoma. , 1978, Clinical chemistry.

[34]  G. Sedvall,et al.  Plasma Amino Acids in Relation to Cerebrospinal Fluid Monoamine Metabolites in Schizophrenic Patients and Healthy Controls , 1985, British Journal of Psychiatry.

[35]  B. Regland Schizophrenia and single-carbon metabolism , 2005, Progress in Neuro-Psychopharmacology and Biological Psychiatry.

[36]  B. S. Larsen,et al.  Mass Spectrometry of Biological Materials , 1990 .

[37]  James F. Calvert,et al.  Factors associated with resistance to dementia despite high Alzheimer disease pathology , 2009, Neurology.

[38]  P. Wood,et al.  Increases in choline levels in rat brain elicited by meclofenoxate , 1982, Neuropharmacology.

[39]  Xianlin Han,et al.  Shotgun metabolomics approach for the analysis of negatively charged water-soluble cellular metabolites from mouse heart tissue. , 2007, Analytical chemistry.

[40]  P. Wood,et al.  Neurochemical analysis of amino acids, polyamines and carboxylic acids: GC-MS quantitation of tBDMS derivatives using ammonia positive chemical ionization. , 2006, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[41]  David Quig,et al.  Nutritional and metabolic status of children with autism vs. neurotypical children, and the association with autism severity , 2011, Nutrition & metabolism.

[42]  R. Banerjee,et al.  One carbon metabolism disturbances and the C677T MTHFR gene polymorphism in children with autism spectrum disorders , 2008, Journal of cellular and molecular medicine.

[43]  D. Goodenowe,et al.  In vitro and in vivo plasmalogen replacement evaluations in rhizomelic chrondrodysplasia punctata and Pelizaeus-Merzbacher disease using PPI-1011, an ether lipid plasmalogen precursor , 2011, Lipids in Health and Disease.

[44]  Y Wang,et al.  Targeted metabolomics and mass spectrometry. , 2010, Advances in protein chemistry and structural biology.

[45]  Lei Zhang,et al.  Salivary Biomarkers for Clinical Applications , 2012, Molecular Diagnosis & Therapy.

[46]  Stefan R Bornstein,et al.  Shotgun lipidomics on a LTQ Orbitrap mass spectrometer by successive switching between acquisition polarity modes. , 2012, Journal of mass spectrometry : JMS.

[47]  J. Lindon,et al.  'Metabonomics': understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data. , 1999, Xenobiotica; the fate of foreign compounds in biological systems.

[48]  T. Rouault Biogenesis of iron-sulfur clusters in mammalian cells: new insights and relevance to human disease , 2012, Disease Models & Mechanisms.

[49]  D. Goodenowe,et al.  Targeted metabolomic analyses of cellular models of pelizaeus-merzbacher disease reveal plasmalogen and myo-inositol solute carrier dysfunction , 2011, Lipids in Health and Disease.

[50]  T. Fehm,et al.  Metabolic signature of breast cancer cell line MCF–7: Profiling of modified nucleosides via LC-IT MS coupling , 2008 .

[51]  S. Golz,et al.  Discovery of the ergothioneine transporter. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[52]  Romana Höftberger,et al.  Peroxisomal alterations in Alzheimer’s disease , 2011, Acta Neuropathologica.

[53]  S. Lovestone,et al.  Plasma biomarkers for Alzheimer's disease: much needed but tough to find. , 2012, Biomarkers in medicine.

[54]  J. Suvisaari,et al.  Metabolome in schizophrenia and other psychotic disorders: a general population-based study , 2011, Genome Medicine.

[55]  Hening Lin S-Adenosylmethionine-dependent alkylation reactions: when are radical reactions used? , 2011, Bioorganic chemistry.

[56]  A. Marshall,et al.  Fourier transform ion cyclotron resonance mass spectrometry: a primer. , 1998, Mass spectrometry reviews.

[57]  R. Waring,et al.  Sulphur metabolism in autism. , 2000 .

[58]  F. McLafferty Tandem mass spectrometry. , 1981, Science.

[59]  M. Cudkowicz,et al.  Biochemical alterations associated with ALS , 2012, Amyotrophic lateral sclerosis : official publication of the World Federation of Neurology Research Group on Motor Neuron Diseases.

[60]  P. Dawson,et al.  Plasma and Urinary Sulfate Determination in a Cohort with Autism , 2012, Biochemical Genetics.

[61]  Paul Sauseng Description of Methods , 2015 .

[62]  C. Altar,et al.  In Vivo Assessment of Dopamine and Norepinephrine Release in Rat Neocortex: Gas Chromatography‐Mass Spectrometry Measurement of 3‐Methoxytyramine and Normetanephrine , 1987, Journal of neurochemistry.

[63]  P. Wood A selected ion monitoring assay for dopamine and its metabolites using negative chemical ionization. , 1982, Biomedical mass spectrometry.

[64]  J. Kaye,et al.  Alzheimer's Disease and Non-Demented High Pathology Control Nonagenarians: Comparing and Contrasting the Biochemistry of Cognitively Successful Aging , 2011, PloS one.

[65]  Abraham Weizman,et al.  Lowered DHEA-S plasma levels in adult individuals with autistic disorder , 2005, European Neuropsychopharmacology.

[66]  M. Chao,et al.  Direct analysis of 5-methylcytosine and 5-methyl-2'-deoxycytidine in human urine by isotope dilution LC-MS/MS: correlations with N-methylated purines and oxidized DNA lesions. , 2012, Chemical research in toxicology.

[67]  G. Valaskovic,et al.  Ultra-low flow nanospray for the normalization of conventional liquid chromatography/mass spectrometry through equimolar response: standard-free quantitative estimation of metabolite levels in drug discovery. , 2006, Rapid communications in mass spectrometry : RCM.

[68]  W. J. Walsh,et al.  Altered Sulfur Amino Acid Metabolism In Immune Cells of Children Diagnosed With Autism , 2008 .

[69]  R. Cotter,et al.  Liquid chromatography/time-of-flight mass spectrometry with high-speed integrated transient recording. , 1990, Analytical chemistry.

[70]  Doug Heath,et al.  Novel plasma phospholipid biomarkers of autism: mitochondrial dysfunction as a putative causative mechanism. , 2009, Prostaglandins, leukotrienes, and essential fatty acids.

[71]  R. Lewensohn,et al.  Metabolomics: Moving to the Clinic , 2010, Journal of Neuroimmune Pharmacology.

[72]  A. Makarov,et al.  The Orbitrap: a new mass spectrometer. , 2005, Journal of mass spectrometry : JMS.

[73]  Martin H. Schmidt,et al.  Characterization of the neuronal dopamine transporter DAT in human blood platelets , 2006, Neuroscience Letters.

[74]  Lawrence R. Frank,et al.  Decreased white matter integrity in late-myelinating fiber pathways in Alzheimer's disease supports retrogenesis , 2009, NeuroImage.

[75]  S. Rea,et al.  Applications of mass spectrometry to metabolomics and metabonomics: detection of biomarkers of aging and of age-related diseases. , 2012, Mass spectrometry reviews.

[76]  Kevin F Krenitsky,et al.  Peripheral ethanolamine plasmalogen deficiency: a logical causative factor in Alzheimer's disease and dementia Published, JLR Papers in Press, August 2, 2007. , 2007, Journal of Lipid Research.

[77]  M. Su,et al.  Potential metabolite markers of schizophrenia , 2011, Molecular Psychiatry.

[78]  Carl W. Cotman,et al.  Deficient Liver Biosynthesis of Docosahexaenoic Acid Correlates with Cognitive Impairment in Alzheimer's Disease , 2010, PloS one.

[79]  Xianlin Han Lipid alterations in the earliest clinically recognizable stage of Alzheimer's disease: implication of the role of lipids in the pathogenesis of Alzheimer's disease. , 2005, Current Alzheimer research.

[80]  C. Gong,et al.  Deregulation of sphingolipid metabolism in Alzheimer's disease , 2010, Neurobiology of Aging.

[81]  A. Williams,et al.  Pathways of cysteine metabolism in MND/ALS , 1994, Journal of the Neurological Sciences.

[82]  B. Clement,et al.  The fourth mammalian molybdenum enzyme mARC: current state of research , 2011, Drug metabolism reviews.

[83]  P. Wood Lipidomics of Alzheimer's disease: current status , 2012, Alzheimer's Research & Therapy.

[84]  Janet K. Kern,et al.  A clinical trial of glutathione supplementation in autism spectrum disorders , 2011, Medical science monitor : international medical journal of experimental and clinical research.

[85]  The Oxidative Stress May be Induced by the Elevated Homocysteine in Schizophrenic Patients , 2012, Neurochemical Research.

[86]  S. Rapoport,et al.  Disease and anatomic specificity of ethanolamine plasmalogen deficiency in Alzheimer's disease brain , 1995, Brain Research.

[87]  Janet K. Kern,et al.  A Prospective Study of Transsulfuration Biomarkers in Autistic Disorders , 2009, Neurochemical Research.

[88]  Maurizio Elia,et al.  Sulphation deficit in “low-functioning” autistic children: a pilot study , 1999, Biological Psychiatry.

[89]  M. Jakovljevič,et al.  Metabolic syndrome and serum homocysteine in patients with bipolar disorder and schizophrenia treated with second generation antipsychotics , 2011, Psychiatry Research.

[90]  Xianlin Han,et al.  Plasmalogen deficiency in early Alzheimer's disease subjects and in animal models: molecular characterization using electrospray ionization mass spectrometry , 2001, Journal of neurochemistry.

[91]  B. Kriem,et al.  The essential role of lipids in Alzheimer's disease. , 2009, Biochimie.

[92]  A. Bergenheim,et al.  Metabolomic patterns in glioblastoma and changes during radiotherapy: a clinical microdialysis study. , 2010, Journal of proteome research.

[93]  Amrita K Cheema,et al.  Biomarkers in the age of omics: time for a systems biology approach. , 2011, Omics : a journal of integrative biology.