Contrasting Patterns of Sequence Evolution at the Functionally Redundant bric à brac Paralogs in Drosophila melanogaster

[1]  Sean B. Carroll,et al.  The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila , 2008, Cell.

[2]  D. Begun,et al.  Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster , 2008, Genetics.

[3]  A. Kopp,et al.  Sex Combs are Important for Male Mating Success in Drosophila melanogaster , 2008, Behavior genetics.

[4]  P. Santamaria,et al.  How Drosophila change their combs: the Hox gene Sex combs reduced and sex comb variation among Sophophora species , 2008, Evolution & development.

[5]  A. Kopp,et al.  Sex-specific expression of a HOX gene associated with rapid morphological evolution. , 2007, Developmental biology.

[6]  Colin N. Dewey,et al.  Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans , 2007, PLoS biology.

[7]  Kai Zeng,et al.  Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants , 2006, Genetics.

[8]  Todd H. Oakley,et al.  Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[9]  A. Kondrashov,et al.  Role of selection in fixation of gene duplications. , 2006, Journal of theoretical biology.

[10]  Paul Scheet,et al.  Automating sequence-based detection and genotyping of SNPs from diploid samples , 2006, Nature Genetics.

[11]  J. Byrnes,et al.  Role of positive selection in the retention of duplicate genes in mammalian genomes , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[12]  P. Andolfatto.  Adaptive evolution of non-coding DNA in Drosophila , 2005, Nature.

[13]  A. Templeton,et al.  ABDOMINAL PIGMENTATION VARIATION IN DROSOPHILA POLYMORPHA: GEOGRAPHIC VARIATION IN THE TRAIT, AND UNDERLYING PHYLOGEOGRAPHY , 2005, Evolution; international journal of organic evolution.

[14]  X. Gu,et al.  Rapid evolution of expression and regulatory divergences after yeast gene duplication. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[15]  M. Long,et al.  Evolving protein functional diversity in new genes of Drosophila. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Cristian I. Castillo-Davis,et al.  cis-Regulatory and protein evolution in orthologous and duplicate genes. , 2004, Genome research.

[17]  Eugene V Koonin,et al.  Duplicated genes evolve slower than singletons despite the initial rate increase , 2004, BMC Evolutionary Biology.

[18]  Angel Amores,et al.  Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish. , 2003, Genome research.

[19]  Kevin Thornton,et al.  libsequence: a C++ class library for evolutionary genetic analysis , 2003, Bioinform..

[20]  David A. Baltrus,et al.  Genome duplication, subfunction partitioning, and lineage divergence: Sox9 in stickleback and zebrafish , 2003, Developmental dynamics : an official publication of the American Association of Anatomists.

[21]  F. Laski,et al.  The Drosophila melanogaster BTB proteins bric à brac bind DNA through a composite DNA binding domain containing a pipsqueak and an AT-Hook motif. , 2003, Nucleic acids research.

[22]  Wen-Hsiung Li,et al.  Divergence in the spatial pattern of gene expression between human duplicate genes. , 2003, Genome research.

[23]  S. Brenner,et al.  Duplication, degeneration and subfunctionalization of the nested synapsin-Timp genes in Fugu. , 2003, Trends in genetics : TIG.

[24]  S. Carroll,et al.  Quantitative trait loci responsible for variation in sexually dimorphic traits in Drosophila melanogaster. , 2003, Genetics.

[25]  D. Nicolae,et al.  Rapid divergence in expression between duplicate genes inferred from microarray data. , 2002, Trends in genetics : TIG.

[26]  F. B. Pickett,et al.  Splitting pairs: the diverging fates of duplicated genes , 2002, Nature Reviews Genetics.

[27]  F. Laski,et al.  Expressing UAS‐bab1 and UAS‐bab2: A comparative study of gain‐of‐function effects and the potential to rescue the bric à brac mutant phenotype , 2002, Genesis.

[28]  F. Laski,et al.  The bric à brac locus consists of two paralogous genes encoding BTB/POZ domain proteins and acts as a homeotic and morphogenetic regulator of imaginal development in Drosophila. , 2002, Development.

[29]  P. Dong,et al.  Limb type-specific regulation of bric a brac contributes to morphological diversity. , 2002, Development.

[30]  T. Kaufman,et al.  Functional equivalence of Hox gene products in the specification of the tritocerebrum during embryonic brain development of Drosophila. , 2001, Development.

[31]  S. Carroll,et al.  Genetic control and evolution of sexually dimorphic characters in Drosophila , 2000, Nature.

[32]  Justin C. Fay,et al.  Hitchhiking under positive Darwinian selection. , 2000, Genetics.

[33]  Stephen M. Mount,et al.  The genome sequence of Drosophila melanogaster. , 2000, Science.

[34]  A. Force,et al.  The probability of duplicate gene preservation by subfunctionalization. , 2000, Genetics.

[35]  P. Holland,et al.  Gene duplication: past, present and future. , 1999, Seminars in cell & developmental biology.

[36]  A. Force,et al.  Preservation of duplicate genes by complementary, degenerative mutations. , 1999, Genetics.

[37]  Y L Wang,et al.  Zebrafish hox clusters and vertebrate genome evolution. , 1998, Science.

[38]  G. Korge,et al.  The Pipsqueak Protein of Drosophila melanogasterBinds to GAGA Sequences through a Novel DNA-binding Domain* , 1998, The Journal of Biological Chemistry.

[39]  P Green,et al.  Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.

[40]  P. Green,et al.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.

[41]  P. Green,et al.  Consed: a graphical tool for sequence finishing. , 1998, Genome research.

[42]  Y. Fu,et al.  Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. , 1997, Genetics.

[43]  J. David,et al.  GROWTH TEMPERATURE AND ADULT PIGMENTATION IN TWO DROSOPHILA SIBLING SPECIES: AN ADAPTIVE CONVERGENCE OF REACTION NORMS IN SYMPATRIC POPULATIONS? , 1996, Evolution; international journal of organic evolution.

[44]  F. Laski,et al.  Drosophila ovary morphogenesis: analysis of terminal filament formation and identification of a gene required for this process. , 1995, Developmental biology.

[45]  F. Laski,et al.  The BTB domain of bric à brac mediates dimerization in vitro , 1995, Molecular and cellular biology.

[46]  F. Laski,et al.  Mechanisms of cell rearrangement and cell recruitment in Drosophila ovary morphogenesis and the requirement of bric à brac. , 1995, Development.

[47]  G. Privé,et al.  The BTB domain, found primarily in zinc finger proteins, defines an evolutionarily conserved family that includes several developmentally regulated genes in Drosophila. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[48]  A. Sidow,et al.  Gene duplications and the origins of vertebrate development. , 1994, Development (Cambridge, England). Supplement.

[49]  C. Rieder,et al.  Greatwall kinase , 2004, The Journal of cell biology.

[50]  F. Laski,et al.  Pattern formation in the limbs of Drosophila: bric à brac is expressed in both a gradient and a wave-like pattern and is required for specification and proper segmentation of the tarsus. , 1993, Development.

[51]  B. Charlesworth,et al.  The effect of deleterious mutations on neutral molecular variation. , 1993, Genetics.

[52]  W. Li,et al.  Statistical tests of neutrality of mutations. , 1993, Genetics.

[53]  M. Slatkin,et al.  Estimation of levels of gene flow from DNA sequence data. , 1992, Genetics.

[54]  M. Kreitman,et al.  Adaptive protein evolution at the Adh locus in Drosophila , 1991, Nature.

[55]  M. Nissen,et al.  The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure. , 1990, The Journal of biological chemistry.

[56]  F. Tajima.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.

[57]  G. A. Watterson.  On the number of segregating sites in genetical models without recombination. , 1975, Theoretical population biology.

[58]  Dr. Susumu Ohno.  Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.

[59]  R. Lewontin.  The Interaction of Selection and Linkage. I. General Considerations; Heterotic Models. , 1964, Genetics.

[60]  B. Barrell,et al.  Maintenance of functional equivalence during paralogous Hox gene evolution , 2022 .