DNA repair and anti-cancer mechanisms in the longest-living mammal: the bowhead whale
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J. George | Zhengdong D. Zhang | V. Gladyshev | Yang Zhao | J. Vijg | A. Seluanov | V. Gorbunova | D. Firsanov | Xiao Tian | G. Tombline | T. Sformo | A. Gilman | Max Zacher | M. Straight | Seyed Ali Biashad | Alyssa R. Williams | Ena Haseljic | Nicholas Hamilton | Avnee Patel | Minseon Lee | J. Yuyang Lu | Nalani Miller
[1] G. Givens,et al. Age estimation for bowhead whales (Balaena mysticetus) using aspartic acid racemisation with enhanced hydrolysis and derivatisation procedures , 2023, J. Cetacean Res. Manage..
[2] Vincent J. Lynch,et al. A CDKN2C retroduplication in Bowhead whales is associated with the evolution of extremely long lifespans and alerted cell cycle dynamics , 2022, bioRxiv.
[3] Vincent J. Lynch,et al. Parallel evolution of reduced cancer risk and tumor suppressor duplications in Xenarthra , 2022, bioRxiv.
[4] N. Schork,et al. Comparative transcriptomics reveals circadian and pluripotency networks as two pillars of longevity regulation. , 2022, Cell metabolism.
[5] Dalia A. Conde,et al. Cancer risk across mammals , 2021, Nature.
[6] Sree Rohit Raj Kolora,et al. Origins and evolution of extreme life span in Pacific Ocean rockfishes , 2021, Science.
[7] Yusuke Matsuno,et al. Genomic Instability and Cancer Risk Associated with Erroneous DNA Repair , 2021, International Journal of Molecular Sciences.
[8] A. Fortunato,et al. Upregulation of DNA repair genes and cell extrusion underpin the remarkable radiation resistance of Trichoplax adhaerens , 2021, bioRxiv.
[9] Meraj Aziz,et al. Cancer gene mutation frequencies for the U.S. population , 2021, Nature Communications.
[10] V. Gladyshev,et al. Maintenance of genome sequence integrity in long- and short-lived rodent species , 2021, Science advances.
[11] S. Gonzalo,et al. Lamin A/C recruits ssDNA protective proteins RPA and RAD51 to stalled replication forks to maintain fork stability , 2021, The Journal of biological chemistry.
[12] David C. Jones,et al. Somatic mutation rates scale with lifespan across mammals , 2021, Nature.
[13] Emily F. Calderbank,et al. Clonal dynamics of haematopoiesis across the human lifespan , 2021, Nature.
[14] P. Podsiadło,et al. The Role of Deep Hypothermia in Cardiac Surgery , 2021, International journal of environmental research and public health.
[15] Alexey I Nesvizhskii,et al. Fast Deisotoping Algorithm and Its Implementation in the MSFragger Search Engine. , 2020, Journal of proteome research.
[16] Peter B. McGarvey,et al. UniProt: the universal protein knowledgebase in 2021 , 2020, Nucleic Acids Res..
[17] Fengchao Yu,et al. IonQuant Enables Accurate and Sensitive Label-Free Quantification With FDR-Controlled Match-Between-Runs , 2020, bioRxiv.
[18] Anke Geng,et al. Fight to the bitter end: DNA repair and aging , 2020, Ageing Research Reviews.
[19] Vincent J. Lynch,et al. Pervasive duplication of tumor suppressors in Afrotherians during the evolution of large bodies and reduced cancer risk , 2020, bioRxiv.
[20] Robert A. Miller,et al. Primers to highly conserved elements optimized for qPCR‐based telomere length measurement in vertebrates , 2020, Molecular ecology resources.
[21] D. Shadrin,et al. Radioresistance, DNA Damage and DNA Repair in Cells With Moderate Overexpression of RPA1 , 2020, Frontiers in Genetics.
[22] Alexey I. Nesvizhskii,et al. Philosopher: a versatile toolkit for shotgun proteomics data analysis , 2020, Nature Methods.
[23] Z. Su,et al. Cold-inducible RNA binding protein agonist enhances the cardioprotective effect of UW solution during extended heart preservation. , 2020, Artificial organs.
[24] C. Maley,et al. Lifetime cancer prevalence and life history traits in mammals , 2020, Evolution, medicine, and public health.
[25] B. Ji,et al. Cold-inducible RNA-binding protein maintains intestinal barrier during deep hypothermic circulatory arrest. , 2019, Interactive cardiovascular and thoracic surgery.
[26] J. Vázquez-Medina,et al. Natural Tolerance to Ischemia and Hypoxemia in Diving Mammals: A Review , 2019, Front. Physiol..
[27] T. Marquès-Bonet,et al. Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae) , 2019, Molecular biology and evolution.
[28] Junyue Xing,et al. Chronic hypoxia–induced Cirbp hypermethylation attenuates hypothermic cardioprotection via down-regulation of ubiquinone biosynthesis , 2019, Science Translational Medicine.
[29] Zhengdong D. Zhang,et al. SIRT6 Is Responsible for More Efficient DNA Double-Strand Break Repair in Long-Lived Species , 2019, Cell.
[30] Matthew C. Canver,et al. CRISPResso2 provides accurate and rapid genome editing sequence analysis , 2019, Nature Biotechnology.
[31] S. Tsunoda,et al. Age-related remodelling of oesophageal epithelia by mutated cancer drivers , 2019, Nature.
[32] Peter J. Campbell,et al. Somatic mutant clones colonize the human esophagus with age , 2018, Science.
[33] Qian Liu,et al. Harnessing accurate non-homologous end joining for efficient precise deletion in CRISPR/Cas9-mediated genome editing , 2018, Genome Biology.
[34] Hanlee P. Ji,et al. CRISPRpic: fast and precise analysis for CRISPR-induced mutations via prefixed index counting , 2018, bioRxiv.
[35] H. Woodrow,et al. : A Review of the , 2018 .
[36] A. Seluanov,et al. Evolution of telomere maintenance and tumour suppressor mechanisms across mammals , 2018, Philosophical Transactions of the Royal Society B: Biological Sciences.
[37] Hung‐wen Liu,et al. PARP-1–dependent recruitment of cold-inducible RNA-binding protein promotes double-strand break repair and genome stability , 2018, Proceedings of the National Academy of Sciences.
[38] L. Hengst,et al. Cold-inducible RNA-binding protein (CIRP) induces translation of the cell-cycle inhibitor p27Kip1 , 2018, Nucleic acids research.
[39] João Pedro de Magalhães,et al. Human Ageing Genomic Resources: new and updated databases , 2017, Nucleic Acids Res..
[40] Vincent J. Lynch,et al. A zombie LIF gene in elephants is up-regulated by TP53 to induce apoptosis in response to DNA damage , 2017, bioRxiv.
[41] John C. Rose,et al. Rapidly inducible Cas9 and DSB-ddPCR to probe editing kinetics , 2017, Nature Methods.
[42] C. Maley,et al. Peto’s Paradox: how has evolution solved the problem of cancer prevention? , 2017, BMC Biology.
[43] G. Banfi,et al. Whole-Body Cryotherapy in Athletes: From Therapy to Stimulation. An Updated Review of the Literature , 2017, Front. Physiol..
[44] Miao-miao Xu,et al. Therapeutic Hypothermia Enhances Cold-Inducible RNA-Binding Protein Expression and Inhibits Mitochondrial Apoptosis in a Rat Model of Cardiac Arrest , 2016, Molecular Neurobiology.
[45] Geet Duggal,et al. Salmon: fast and bias-aware quantification of transcript expression using dual-phase inference , 2017, Nature Methods.
[46] Nacho Molina,et al. Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp , 2016, Genes & development.
[47] R. Peto. Epidemiology, multistage models, and short-term mutagenicity tests. , 2016, International journal of epidemiology.
[48] CD Richardson,et al. Non-homologous DNA increases gene disruption efficiency by altering DNA repair outcomes , 2016, Nature Communications.
[49] E. Drobetsky,et al. Mutations in Replicative Stress Response Pathways Are Associated with S Phase-specific Defects in Nucleotide Excision Repair* , 2015, The Journal of Biological Chemistry.
[50] Shane T. Jensen,et al. Potential Mechanisms for Cancer Resistance in Elephants and Comparative Cellular Response to DNA Damage in Humans. , 2015, JAMA.
[51] P. Macpherson,et al. Oxidative Damage to RPA Limits the Nucleotide Excision Repair Capacity of Human Cells. , 2015, The Journal of investigative dermatology.
[52] Richard D. Emes,et al. TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants , 2015, bioRxiv.
[53] P. Sung,et al. Interplay between Ku and Replication Protein A in the Restriction of Exo1-mediated DNA Break End Resection* , 2015, The Journal of Biological Chemistry.
[54] M. Stratton,et al. High burden and pervasive positive selection of somatic mutations in normal human skin , 2015, Science.
[55] N. Grishin,et al. Insights into the Evolution of Longevity from the Bowhead Whale Genome , 2015, Cell reports.
[56] M. McCarthy,et al. Age-related clonal hematopoiesis associated with adverse outcomes. , 2014, The New England journal of medicine.
[57] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[58] R. Winn,et al. The soft agar colony formation assay. , 2014, Journal of visualized experiments : JoVE.
[59] J. George,et al. The transcriptome of the bowhead whale Balaena mysticetus reveals adaptations of the longest-lived mammal , 2014, Aging.
[60] N. Mailand,et al. ATR Prohibits Replication Catastrophe by Preventing Global Exhaustion of RPA , 2013, Cell.
[61] P. Sung,et al. Double-Strand Break Repair by Interchromosomal Recombination: An In Vivo Repair Mechanism Utilized by Multiple Somatic Tissues in Mammals , 2013, PloS one.
[62] Colin N. Dewey,et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.
[63] J. George,et al. Age estimates based on aspartic acid racemization for bowhead whales (Balaena mysticetus) harvested in 1998–2000 and the relationship between racemization rate and body temperature , 2013 .
[64] L. Symington,et al. RPA coordinates DNA end resection and prevents formation of DNA hairpins. , 2013, Molecular cell.
[65] A. Utani,et al. Malfunction of nuclease ERCC1-XPF results in diverse clinical manifestations and causes Cockayne syndrome, xeroderma pigmentosum, and Fanconi anemia. , 2013, American journal of human genetics.
[66] David Jaillet. DNA Repair and Aging , 2012 .
[67] John Chilton,et al. Using iRT, a normalized retention time for more targeted measurement of peptides , 2012, Proteomics.
[68] Michael A Quail,et al. Optimal enzymes for amplifying sequencing libraries , 2011, Nature Methods.
[69] FollmannE.,et al. A new way to estimate the age of bowhead whales (Balaena mysticetus) using ovarian corpora counts , 2011 .
[70] A. Seluanov,et al. SIRT6 Promotes DNA Repair Under Stress by Activating PARP1 , 2011, Science.
[71] A. Seluanov,et al. Establishing primary adult fibroblast cultures from rodents. , 2010, Journal of visualized experiments : JoVE.
[72] Andrei Seluanov,et al. Analysis of DNA double-strand break (DSB) repair in mammalian cells. , 2010, Journal of visualized experiments : JoVE.
[73] M. Zhan,et al. Functional Significance for a Heterogenous Ribonucleoprotein A18 Signature RNA Motif in the 3′-Untranslated Region of Ataxia Telangiectasia Mutated and Rad3-related (ATR) Transcript* , 2010, The Journal of Biological Chemistry.
[74] J. Campisi,et al. The senescence-associated secretory phenotype: the dark side of tumor suppression. , 2010, Annual review of pathology.
[75] Davis J. McCarthy,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[76] F. Johnson,et al. Significant correlation of species longevity with DNA double strand break recognition but not with telomere length , 2009, Mechanisms of Ageing and Development.
[77] R. Wollman,et al. A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability. , 2009, Molecular cell.
[78] C. Smales,et al. Cold-inducible RNA binding protein (CIRP) expression is modulated by alternative mRNAs. , 2009, RNA.
[79] J. Bockstoce,et al. Two historical weapon fragments as an aid to estimating the longevity and movements of bowhead whales , 2008, Polar Biology.
[80] Th. Boveri. Concerning the Origin of Malignant Tumours by Theodor Boveri. Translated and annotated by Henry Harris , 2008, Journal of Cell Science.
[81] Steven P Gygi,et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry , 2007, Nature Methods.
[82] K. Catania,et al. Telomerase activity coevolves with body mass not lifespan , 2007, Aging cell.
[83] Pierre Cau,et al. Molecular bases of progeroid syndromes. , 2006, Human molecular genetics.
[84] Y. Zou,et al. Functions of human replication protein A (RPA): From DNA replication to DNA damage and stress responses , 2006, Journal of cellular physiology.
[85] M. Deshmukh,et al. Restricting Apoptosis for Postmitotic Cell Survival and its Relevance to Cancer , 2006, Cell cycle.
[86] David J Weber,et al. Post-transcriptional regulation of thioredoxin by the stress inducible heterogenous ribonucleoprotein A18 , 2006, Nucleic acids research.
[87] David J. Chen,et al. Genomic instability in laminopathy-based premature aging , 2005, Nature Medicine.
[88] M. Daras,et al. Novel Checkpoint Response to Genotoxic Stress Mediated by Nucleolin-Replication Protein A Complex Formation , 2005, Molecular and Cellular Biology.
[89] R. Weinberg,et al. Species- and cell type-specific requirements for cellular transformation. , 2004, Cancer cell.
[90] R. Kirschner,et al. Oxygen-regulated expression of the RNA-binding proteins RBM3 and CIRP by a HIF-1-independent mechanism , 2004, Journal of Cell Science.
[91] O. Baskurt,et al. TEMPERATURE-VISCOSITY RELATIONS OF BOWHEAD WHALE BLOOD: A POSSIBLE MECHANISM FOR MAINTAINING COLD BLOOD FLOW , 2004 .
[92] F. Carrier,et al. The UV-inducible RNA-binding Protein A18 (A18 hnRNP) Plays a Protective Role in the Genotoxic Stress Response* , 2001, The Journal of Biological Chemistry.
[93] Huichen Wang,et al. RPA facilitates rejoining of DNA double-strand breaks in an in vitro assay utilizing genomic DNA as substrate , 2001, International journal of radiation biology.
[94] J. George,et al. Age and growth estimates of bowhead whales (Balaena mysticetus) via aspartic acid racemization , 1999 .
[95] Matthias Platzer,et al. Nibrin, a Novel DNA Double-Strand Break Repair Protein, Is Mutated in Nijmegen Breakage Syndrome , 1998, Cell.
[96] Katsuhiko Itoh,et al. A Glycine-rich RNA-binding Protein Mediating Cold-inducible Suppression of Mammalian Cell Growth , 1997, The Journal of cell biology.
[97] C Roskelley,et al. A biomarker that identifies senescent human cells in culture and in aging skin in vivo. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[98] P. Armitage,et al. The Age Distribution of Cancer and a Multi-stage Theory of Carcinogenesis , 1954, British Journal of Cancer.
[99] E. Shi,et al. Cold-inducible ribonucleic acid-binding protein attenuates acute kidney injuries after deep hypothermic circulatory arrest in rats. , 2018, Interactive cardiovascular and thoracic surgery.
[100] S. Kozubek,et al. Repair of DNA Double-Strand Breaks , 2012 .
[101] M. Lieber,et al. Nonhomologous DNA end joining (NHEJ) and chromosomal translocations in humans. , 2010, Sub-cellular biochemistry.
[102] M. Blackburn. Development of new tools and applications for high-throughput sequencing of microbiomes in environmental or clinical samples , 2010 .
[103] J. C. George. Growth, morphology and energetics of bowhead whales (Balaena mysticetus) , 2009 .
[104] M. Wold. Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism. , 1997, Annual review of biochemistry.