Interaction networks: from protein functions to drug discovery. A review.
暂无分享,去创建一个
E. Chautard | N. Thierry-Mieg | S. Ricard-Blum | Emilie Chautard | Nicolas Thierry-Mieg | Sylvie Ricard-Blum
[1] C. Overall,et al. Protease proteomics: revealing protease in vivo functions using systems biology approaches. , 2008, Molecular aspects of medicine.
[2] D. Figeys. Mapping the human protein interactome , 2008, Cell Research.
[3] C. Landry,et al. An in Vivo Map of the Yeast Protein Interactome , 2008, Science.
[4] Peter Uetz,et al. MPIDB: the microbial protein interaction database , 2008, Bioinform..
[5] Yves Deville,et al. NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways , 2008, Nucleic Acids Res..
[6] P. Uetz,et al. The Binary Protein Interactome of Treponema pallidum – The Syphilis Spirochete , 2008, PloS one.
[7] Alain Guénoche,et al. Defining a Modular Signalling Network from the Fly Interactome , 2008, BMC Systems Biology.
[8] Hyeong Jun An,et al. Estimating the size of the human interactome , 2008, Proceedings of the National Academy of Sciences.
[9] R. Sharan,et al. Protein networks in disease. , 2008, Genome research.
[10] Deyu Zhou,et al. Extracting interactions between proteins from the literature , 2008, J. Biomed. Informatics.
[11] Matthew D. Dyer,et al. The Landscape of Human Proteins Interacting with Viruses and Other Pathogens , 2008, PLoS pathogens.
[12] A. Bateman,et al. Protein interactions in human genetic diseases , 2008, Genome Biology.
[13] Yasukazu Nakamura,et al. A Large Scale Analysis of Protein–Protein Interactions in the Nitrogen-fixing Bacterium Mesorhizobium loti , 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.
[14] Christian von Mering,et al. STITCH: interaction networks of chemicals and proteins , 2007, Nucleic Acids Res..
[15] Anton J. Enright,et al. Denoising inferred functional association networks obtained by gene fusion analysis , 2007, BMC Genomics.
[16] J. Han,et al. A modular network model of aging , 2007, Molecular systems biology.
[17] Ovidiu Daescu,et al. The Human Red Blood Cell Proteome and Interactome , 2007, Experimental biology and medicine.
[18] K. Dolinski,et al. The BioGRID Interaction Database: 2008 update , 2007, Nucleic Acids Res..
[19] Yasukazu Nakamura,et al. A Large-scale Protein–protein Interaction Analysis in Synechocystis sp. PCC6803 , 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.
[20] Jean-Marc Schwartz,et al. A global view of drug-therapy interactions , 2007, BMC pharmacology.
[21] Jianwen Fang,et al. DB-PABP: a database of polyanion-binding proteins , 2007, Nucleic Acids Res..
[22] A. Barabasi,et al. Drug—target network , 2007, Nature Biotechnology.
[23] Trey Ideker,et al. Integrating physical and genetic maps: from genomes to interaction networks , 2007, Nature Reviews Genetics.
[24] Susumu Goto,et al. The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs) , 2007, Bioinform..
[25] S. Itzkovitz,et al. Functional atlas of the integrin adhesome , 2007, Nature Cell Biology.
[26] Peter Woollard,et al. The minimum information required for reporting a molecular interaction experiment (MIMIx) , 2007, Nature Biotechnology.
[27] Julie A. Hines,et al. A proteome-wide protein interaction map for Campylobacter jejuni , 2007, Genome Biology.
[28] A. Barabasi,et al. The human disease network , 2007, Proceedings of the National Academy of Sciences.
[29] Cheng-Yan Kao,et al. Reconstruction of human protein interolog network using evolutionary conserved network , 2007, BMC Bioinformatics.
[30] A. Vazquez,et al. Epstein–Barr virus and virus human protein interaction maps , 2007, Proceedings of the National Academy of Sciences.
[31] R. Sharan,et al. Network-based prediction of protein function , 2007, Molecular systems biology.
[32] Christopher M. Overall,et al. In search of partners: linking extracellular proteases to substrates , 2007, Nature Reviews Molecular Cell Biology.
[33] Pall I. Olason,et al. A human phenome-interactome network of protein complexes implicated in genetic disorders , 2007, Nature Biotechnology.
[34] J. S. Bader,et al. A systems biology analysis of the Drosophila phagosome , 2007, Nature.
[35] Erich E. Wanker,et al. UniHI: an entry gate to the human protein interactome , 2006, Nucleic Acids Res..
[36] Y. Zhang,et al. IntAct—open source resource for molecular interaction data , 2006, Nucleic Acids Res..
[37] J. Han,et al. Identification of the Proliferation/Differentiation Switch in the Cellular Network of Multicellular Organisms , 2006, PLoS Comput. Biol..
[38] Peer Bork,et al. Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle , 2006, PLoS genetics.
[39] Paul A. Bates,et al. Global topological features of cancer proteins in the human interactome , 2006, Bioinform..
[40] A. Gavin,et al. Protein co-membership and biochemical affinity purifications. , 2006, Drug discovery today. Technologies.
[41] M. Tewari,et al. The Clinical Applications of a Systems Approach , 2006, PLoS medicine.
[42] A. Barabasi,et al. A Protein–Protein Interaction Network for Human Inherited Ataxias and Disorders of Purkinje Cell Degeneration , 2006, Cell.
[43] S. Kanaya,et al. Large-scale identification of protein-protein interaction of Escherichia coli K-12. , 2006, Genome research.
[44] Falk Schreiber,et al. Exploration of biological network centralities with CentiBiN , 2006, BMC Bioinformatics.
[45] P. Bork,et al. Proteome survey reveals modularity of the yeast cell machinery , 2006, Nature.
[46] Sean R. Collins,et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae , 2006, Nature.
[47] C. Overall,et al. Towards third generation matrix metalloproteinase inhibitors for cancer therapy , 2006, British Journal of Cancer.
[48] Nicolas Thierry-Mieg,et al. A new pooling strategy for high-throughput screening: the Shifted Transversal Design , 2006, BMC Bioinformatics.
[49] B. Berger,et al. Herpesviral Protein Networks and Their Interaction with the Human Proteome , 2006, Science.
[50] Gavin MacBeath,et al. A quantitative protein interaction network for the ErbB receptors using protein microarrays , 2006, Nature.
[51] Hans-Werner Mewes,et al. MPact: the MIPS protein interaction resource on yeast , 2005, Nucleic Acids Res..
[52] Robert Hoffmann,et al. HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms , 2005, BMC Bioinformatics.
[53] M. Vignali,et al. A protein interaction network of the malaria parasite Plasmodium falciparum , 2005, Nature.
[54] S. L. Wong,et al. Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.
[55] H. Lehrach,et al. A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome , 2005, Cell.
[56] Igor Jurisica,et al. Online Predicted Human Interaction Database , 2005, Bioinform..
[57] Razvan C. Bunescu,et al. Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome , 2005, Genome Biology.
[58] Natasa Przulj,et al. High-Throughput Mapping of a Dynamic Signaling Network in Mammalian Cells , 2005, Science.
[59] A. Emili,et al. Interaction network containing conserved and essential protein complexes in Escherichia coli , 2005, Nature.
[60] Rohit J. Kate,et al. Comparative experiments on learning information extractors for proteins and their interactions , 2005, Artif. Intell. Medicine.
[61] A. Fraser,et al. A first-draft human protein-interaction map , 2004, Genome Biology.
[62] A. Barabasi,et al. Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.
[63] Giulio Superti-Furga,et al. A physical and functional map of the human TNF-α/NF-κB signal transduction pathway , 2004, Nature Cell Biology.
[64] S. L. Wong,et al. A Map of the Interactome Network of the Metazoan C. elegans , 2004, Science.
[65] James R. Knight,et al. A Protein Interaction Map of Drosophila melanogaster , 2003, Science.
[66] Marc Vidal,et al. Integrating Interactome, Phenome, and Transcriptome Mapping Data for the C. elegans Germline , 2002, Current Biology.
[67] Yoshihiro Yamaguchi,et al. Roles for the Two-hybrid System in Exploration of the Yeast Protein Interactome* , 2002, Molecular & Cellular Proteomics.
[68] Gary D Bader,et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry , 2002, Nature.
[69] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[70] M. Vidal,et al. Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". , 2001, Genome research.
[71] M. Vidal,et al. A protein–protein interaction map of the Caenorhabditis elegans 26S proteasome , 2001, EMBO reports.
[72] M. Gerstein,et al. Global Analysis of Protein Activities Using Proteome Chips , 2001, Science.
[73] A. Barabasi,et al. Lethality and centrality in protein networks , 2001, Nature.
[74] R. Ozawa,et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[75] J. Wojcik,et al. The protein–protein interaction map of Helicobacter pylori , 2001, Nature.
[76] A. Barabasi,et al. Error and attack tolerance of complex networks , 2000, Nature.
[77] S. Fields,et al. Genome-wide analysis of vaccinia virus protein-protein interactions. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[78] James R. Knight,et al. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.
[79] P. Legrain,et al. A genomic approach of the hepatitis C virus generates a protein interaction map. , 2000, Gene.
[80] M. Vidal,et al. Protein interaction mapping in C. elegans using proteins involved in vulval development. , 2000, Science.
[81] J. Hopfield,et al. From molecular to modular cell biology , 1999, Nature.
[82] Anton J. Enright,et al. Protein interaction maps for complete genomes based on gene fusion events , 1999, Nature.
[83] D. Eisenberg,et al. Detecting protein function and protein-protein interactions from genome sequences. , 1999, Science.
[84] S. Fields,et al. A novel genetic system to detect proteinprotein interactions , 1989, Nature.
[85] M. DePamphilis,et al. HUMAN DISEASE , 1957, The Ulster Medical Journal.
[86] Gianni Cesareni,et al. Searching the protein interaction space through the MINT database. , 2008, Methods in molecular biology.
[87] A. Barabasi,et al. High-Quality Binary Protein Interaction Map of the Yeast Interactome Network , 2008, Science.
[88] N. Gulbahce,et al. Viral Networks , connecting virus-human interaction networks to population disease patterns , 2008 .
[89] Shu Chen,et al. Cell Interaction Knowledgebase: An Online Database for Innate Immune Cells, Cytokines and Chemokines , 2007, Silico Biol..
[90] Adam J. Smith,et al. The Database of Interacting Proteins: 2004 update , 2004, Nucleic Acids Res..
[91] M. Vidal,et al. Protein interaction maps for model organisms , 2001, Nature Reviews Molecular Cell Biology.
[92] Ioannis Xenarios,et al. DIP: The Database of Interacting Proteins: 2001 update , 2001, Nucleic Acids Res..
[93] Yongjin Li,et al. Discovering disease-genes by topological features in human protein-protein interaction network , 2006, Bioinform..