Parallel deep solutions for image retrieval from imbalanced medical imaging archives

Abstract Learning and extracting representative features along with similarity measurements in high dimensional feature spaces is a critical task. Moreover, the problem of how to bridge the semantic gap, between the low-level information captured by a machine learning model and the high-level one interpreted by a human operator, is still a practical challenge, especially in medicine. In medical applications, retrieving similar images from archives of past cases can be immensely beneficial in diagnostic imaging. However, large and balanced datasets may not be available for many reasons. Exploring the ways of using deep networks, for classification to retrieval, to fill this semantic gap was a key question for this research. In this work, we propose a parallel deep solution approach based on convolutional neural networks followed by a local search using LBP, HOG and Radon features. The IRMA dataset, from ImageCLEF initiative, containing 14,400 X-ray images, is employed to validate the proposed scheme. With a total IRMA error of 165.55, the performance of our scheme surpasses the dictionary approach and many other learning methods applied on the same dataset.

[1]  M. S. Sudhakar,et al.  An effective biomedical image retrieval framework in a fuzzy feature space employing Phase Congruency and GeoSOM , 2014, Appl. Soft Comput..

[2]  David Dagan Feng,et al.  Content-Based Medical Image Retrieval: A Survey of Applications to Multidimensional and Multimodality Data , 2013, Journal of Digital Imaging.

[3]  Chee Peng Lim,et al.  Medical image analysis using wavelet transform and deep belief networks , 2017, Expert Syst. Appl..

[4]  Saeid Nahavandi,et al.  A Haptics Feedback Based-LSTM Predictive Model for Pericardiocentesis Therapy Using Public Introperative Data , 2017, ICONIP.

[5]  Ronald M. Summers,et al.  Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique , 2016 .

[6]  Chen Huang,et al.  Learning Deep Representation for Imbalanced Classification , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[7]  Loris Nanni,et al.  Survey on LBP based texture descriptors for image classification , 2012, Expert Syst. Appl..

[8]  Henning Müller,et al.  Overview of the ImageCLEF 2012 Medical Image Retrieval and Classification Tasks , 2012, CLEF.

[9]  Yoshua Bengio,et al.  How transferable are features in deep neural networks? , 2014, NIPS.

[10]  Andrew K. C. Wong,et al.  Binary codes for tagging x-ray images via deep de-noising autoencoders , 2016, 2016 International Joint Conference on Neural Networks (IJCNN).

[11]  M. Karthikeyan,et al.  Probability based document clustering and image clustering using content-based image retrieval , 2013, Appl. Soft Comput..

[12]  Harry Wechsler,et al.  The FERET database and evaluation procedure for face-recognition algorithms , 1998, Image Vis. Comput..

[13]  Saeid Nahavandi,et al.  A Deep Learning-Based Model for Tactile Understanding on Haptic Data Percutaneous Needle Treatment , 2017, ICONIP.

[14]  Xiaochuan Pan,et al.  A unified analysis of exact methods of inverting the 2-D exponential radon transform, with implications for noise control in SPECT , 1995, IEEE Trans. Medical Imaging.

[15]  Hong Fu,et al.  Automatic medical image categorization and annotation using LBP and MPEG-7 edge histograms , 2008, 2008 International Conference on Information Technology and Applications in Biomedicine.

[16]  Marios Anthimopoulos,et al.  Lung Pattern Classification for Interstitial Lung Diseases Using a Deep Convolutional Neural Network , 2016, IEEE Transactions on Medical Imaging.

[17]  Urbano Nunes,et al.  Trainable classifier-fusion schemes: An application to pedestrian detection , 2009, 2009 12th International IEEE Conference on Intelligent Transportation Systems.

[18]  Saeid Nahavandi,et al.  A deep-structural medical image classification for a Radon-based image retrieval , 2017, 2017 IEEE 30th Canadian Conference on Electrical and Computer Engineering (CCECE).

[19]  N. Breslow A generalized Kruskal-Wallis test for comparing K samples subject to unequal patterns of censorship , 1970 .

[20]  Yan Qiang,et al.  Rapid Retrieval of Lung Nodule CT Images Based on Hashing and Pruning Methods , 2016, BioMed research international.

[21]  Thomas Martin Deserno,et al.  Feature description with SIFT, SURF, BRIEF, BRISK, or FREAK? A general question answered for bone age assessment , 2016, Comput. Biol. Medicine.

[22]  Hermann Ney,et al.  Automatic categorization of medical images for content-based retrieval and data mining. , 2005, Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society.

[23]  Weisi Lin,et al.  Generalized Biased Discriminant Analysis for Content-Based Image Retrieval , 2012, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

[24]  Justin Salamon,et al.  Deep Convolutional Neural Networks and Data Augmentation for Environmental Sound Classification , 2016, IEEE Signal Processing Letters.

[25]  Geoffrey E. Hinton,et al.  Deep Learning , 2015, Nature.

[26]  Tieniu Tan,et al.  Boosted local structured HOG-LBP for object localization , 2011, CVPR 2011.

[27]  Hamid R. Tizhoosh,et al.  Stacked Autoencoders for Medical Image Search , 2016, ISVC.

[28]  Matti Pietikäinen,et al.  Local Binary Patterns for Still Images , 2011 .

[29]  Ying Zhang,et al.  Notice of Violation of IEEE Publication PrinciplesBag-of-Features Based Medical Image Retrieval via Multiple Assignment and Visual Words Weighting , 2011, IEEE Transactions on Medical Imaging.

[30]  Ahmet Ekin,et al.  Local Structure-Based Region-of-Interest Retrieval in Brain MR Images , 2010, IEEE Transactions on Information Technology in Biomedicine.

[31]  Stéfan Jacques Darmoni,et al.  Natural language processing versus content-based image analysis for medical document retrieval , 2009 .

[32]  Yongdong Zhang,et al.  Multiview Spectral Embedding , 2010, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

[33]  Tatiana Tommasi,et al.  Idiap on Medical Image Classification , 2010, ImageCLEF.

[34]  Xiabi Liu,et al.  Using HOG-LBP features and MMP learning to recognize imaging signs of lung lesions , 2012, 2012 25th IEEE International Symposium on Computer-Based Medical Systems (CBMS).

[35]  Bill Triggs,et al.  Histograms of oriented gradients for human detection , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[36]  Barbara Caputo,et al.  Overview of the CLEF 2009 Medical Image Annotation Track , 2009, CLEF.

[37]  Tieniu Tan,et al.  A survey on visual surveillance of object motion and behaviors , 2004, IEEE Transactions on Systems, Man, and Cybernetics, Part C (Applications and Reviews).

[38]  Hamid R. Tizhoosh,et al.  MinMax Radon Barcodes for Medical Image Retrieval , 2016, ISVC.

[39]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[40]  Dah-Jye Lee,et al.  A Spine X-Ray Image Retrieval System Using Partial Shape Matching , 2008, IEEE Transactions on Information Technology in Biomedicine.

[41]  Dalila Boughaci,et al.  Harmony search algorithm for image reconstruction from projections , 2016, Appl. Soft Comput..

[42]  Sidong Liu,et al.  Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging , 2016, IEEE Transactions on Biomedical Engineering.

[43]  Yoshua Bengio,et al.  Gradient-based learning applied to document recognition , 1998, Proc. IEEE.

[44]  Henning Müller,et al.  Overview of the CLEF 2009 Medical Image Retrieval Track , 2009, CLEF.

[45]  Hamid R. Tizhoosh,et al.  Medical Image Classification via SVM Using LBP Features from Saliency-Based Folded Data , 2015, 2015 IEEE 14th International Conference on Machine Learning and Applications (ICMLA).

[46]  Hamid R. Tizhoosh,et al.  Generating binary tags for fast medical image retrieval based on convolutional nets and Radon Transform , 2016, 2016 International Joint Conference on Neural Networks (IJCNN).

[47]  Loris Nanni,et al.  Local binary patterns variants as texture descriptors for medical image analysis , 2010, Artif. Intell. Medicine.

[48]  Yuan Yan Tang,et al.  Incremental Embedding and Learning in the Local Discriminant Subspace With Application to Face Recognition , 2010, IEEE Transactions on Systems, Man, and Cybernetics, Part C (Applications and Reviews).

[49]  Shuicheng Yan,et al.  An HOG-LBP human detector with partial occlusion handling , 2009, 2009 IEEE 12th International Conference on Computer Vision.

[50]  Henning Müller,et al.  Overview of the ImageCLEF 2013 Medical Tasks , 2013, CLEF.

[51]  T M Lehmann,et al.  Content-based Image Retrieval in Medical Applications , 2004, Methods of Information in Medicine.

[52]  H. Greenspan,et al.  Automated retrieval of CT images of liver lesions on the basis of image similarity: method and preliminary results. , 2010, Radiology.

[53]  Hayit Greenspan,et al.  Medical Image Categorization and Retrieval for PACS Using the GMM-KL Framework , 2007, IEEE Transactions on Information Technology in Biomedicine.

[54]  Junzhou Huang,et al.  Automatic Image Annotation and Retrieval Using Group Sparsity , 2012, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

[55]  Yoshua Bengio,et al.  Why Does Unsupervised Pre-training Help Deep Learning? , 2010, AISTATS.

[56]  Chee Peng Lim,et al.  A new PSO-based approach to fire flame detection using K-Medoids clustering , 2017, Expert Syst. Appl..

[57]  Hayit Greenspan,et al.  Addressing the ImageClef 2009 Challenge Using a Patch-based Visual Words Representation , 2009, CLEF.

[58]  Chee Peng Lim,et al.  A Wavelet Deep Belief Network-Based Classifier for Medical Images , 2016, ICONIP.

[59]  Bipin C. Desai,et al.  A Framework for Medical Image Retrieval Using Machine Learning and Statistical Similarity Matching Techniques With Relevance Feedback , 2007, IEEE Transactions on Information Technology in Biomedicine.

[60]  Xavier Lladó,et al.  False Positive Reduction in Mammographic Mass Detection Using Local Binary Patterns , 2007, MICCAI.

[61]  Razvan Pascanu,et al.  Theano: new features and speed improvements , 2012, ArXiv.

[62]  Hayit Greenspan,et al.  X-ray Categorization and Retrieval on the Organ and Pathology Level, Using Patch-Based Visual Words , 2011, IEEE Transactions on Medical Imaging.

[63]  Andrew Zisserman,et al.  Return of the Devil in the Details: Delving Deep into Convolutional Nets , 2014, BMVC.

[64]  Ji Wan,et al.  Deep Learning for Content-Based Image Retrieval: A Comprehensive Study , 2014, ACM Multimedia.

[65]  Ronald M. Summers,et al.  Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[66]  Hamid R. Tizhoosh,et al.  Local radon descriptors for image search , 2017, 2017 Seventh International Conference on Image Processing Theory, Tools and Applications (IPTA).

[67]  Hamid R. Tizhoosh,et al.  Retrieving Similar X-ray Images from Big Image Data using Radon Barcodes with Single Projections , 2017, ICPRAM.

[68]  Yuan-Fang Wang,et al.  Feature detector and descriptor for medical images , 2009, Medical Imaging.

[69]  Matti Pietikäinen,et al.  Multiresolution Gray-Scale and Rotation Invariant Texture Classification with Local Binary Patterns , 2002, IEEE Trans. Pattern Anal. Mach. Intell..