Changing the intestinal microbiota of chickens in ontogenesis

This paper presents the results of a molecular genetic analysis of the changes in the composition of the microbiota of the blind processes of the intestine of the hens of the industrial loam "Lohmann Brown" during ontogeny. According to the results of the analysis of taxonomic affiliation it is established that over 70% of the phylotypes belong to the three phylums - Firmicutes, Bacteroidetes and Proteobacteria, less represented were Actinobacteria, Tenericutes and Fusobacteria, and a significant number of unidentified bacteria was detected. During ontogenesis, birds exhibited marked changes in the ratio of the number of phylotypes and taxonomic groups of the intestinal microbiota. At the age of 20-40 weeks, the birds showed a significant increase in the representatives of the Clostridia class involved in the metabolism of carbohydrates, acid-utilizing bacteria of the order Negativicutes and bacteria with high antagonistic properties (Bifidobacteriales, Bacillus), as well as a significant decrease in the content of a number of opportunistic and pathogenic taxa - family Enterobacteriaceae, the order of Pseudomonadales, phylum Tenericutes. The greatest homogeneity of the bacterial community of the blind processes of the gastrointestinal tract in laying hens was revealed at the age of 20 weeks, which is confirmed by the estimation of biodiversity by means of ecological indices.

[1]  Zhongtang Yu,et al.  The Bacteriomes of Ileal Mucosa and Cecal Content of Broiler Chickens and Turkeys as Revealed by Metagenomic Analysis , 2016, International journal of microbiology.

[2]  Steven C Ricke,et al.  Microbial Populations in Naked Neck Chicken Ceca Raised on Pasture Flock Fed with Commercial Yeast Cell Wall Prebiotics via an Illumina MiSeq Platform , 2016, PloS one.

[3]  I. van den Anker,et al.  Differences in egg nutrient availability, development, and nutrient metabolism of broiler and layer embryos. , 2015, Poultry science.

[4]  H. Gan,et al.  Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses , 2015, Gut Pathogens.

[5]  S. Knaga,et al.  Changes in Quail Blastodermal Cell Status as a Result of Selection. , 2015, Folia biologica.

[6]  D. Stanley,et al.  Microbiota of the chicken gastrointestinal tract: influence on health, productivity and disease , 2014, Applied Microbiology and Biotechnology.

[7]  A. Rajić,et al.  A systematic review-meta-analysis and meta-regression on the effect of selected competitive exclusion products on Salmonella spp. prevalence and concentration in broiler chickens. , 2013, Preventive veterinary medicine.

[8]  S. Wei,et al.  Bacterial census of poultry intestinal microbiome. , 2013, Poultry science.

[9]  D. D'Souza,et al.  Next-generation sequencing: the future of molecular genetics in poultry production and food safety. , 2013, Poultry science.

[10]  M. Ferchichi,et al.  Purification and characterization of a new bacteriocin active against Campylobacter produced by Lactobacillus salivarius SMXD51. , 2012, Food microbiology.

[11]  N. Goldenfeld,et al.  The microbiome of the chicken gastrointestinal tract , 2012, Animal Health Research Reviews.

[12]  R. P. Ross,et al.  Bacteriocin Production: a Probiotic Trait? , 2011, Applied and Environmental Microbiology.

[13]  S. Sharif,et al.  Oral Treatment of Chickens with Lactobacilli Influences Elicitation of Immune Responses , 2011, Clinical and Vaccine Immunology.

[14]  H. Thippareddi,et al.  Clostridium perfringens growth from spore inocula in sous-vide processed pork-based Mexican entrée. , 2009, Journal of food science.

[15]  A. Scupham Campylobacter Colonization of the Turkey Intestine in the Context of Microbial Community Development , 2009, Applied and Environmental Microbiology.

[16]  R. Harvey,et al.  Probiotics, prebiotics and competitive exclusion for prophylaxis against bacterial disease , 2008, Animal Health Research Reviews.

[17]  R. Mackie,et al.  Coccidia-induced mucogenesis promotes the onset of necrotic enteritis by supporting Clostridium perfringens growth. , 2008, Veterinary immunology and immunopathology.

[18]  C. Knight,et al.  Microbial Imprinting in Gut Development and Health , 2008 .

[19]  J. Maurer,et al.  Diversity and Succession of the Intestinal Bacterial Community of the Maturing Broiler Chicken , 2003, Applied and Environmental Microbiology.

[20]  K. Schleifer,et al.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.