Atlas Stratification

The process of constructing an atlas typically involves selecting one individual from a sample on which to base or root the atlas. If the individual selected is far from the population mean, then the resulting atlas is biased towards this individual. This, in turn, may bias any inferences made with the atlas. Unbiased atlas construction addresses this issue by either basing the atlas on the individual which is the median of the sample or by an iterative technique whereby the atlas converges to the unknown population mean. In this paper, we explore the question of whether a single atlas is appropriate for a given sample or whether there is sufficient image based evidence from which we can infer multiple atlases, each constructed from a subset of the data. We refer to this process as atlas stratification. Essentially, we determine whether the sample, and hence the population, is multi-modal and is best represented by an atlas per mode. In this preliminary work, we use the mean shift algorithm to identify the modes of the sample and multidimensional scaling to visualize the clustering process on clinical MRI neurological image datasets.

[1]  Torsten Rohlfing,et al.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains , 2004, NeuroImage.

[2]  Simon K. Warfield,et al.  : Multi-subject Registration for Unbiased Statistical Atlas Construction , 2004, MICCAI.

[3]  Guido Gerig,et al.  Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, 8th International Conference, Palm Springs, CA, USA, October 26-29, 2005, Proceedings, Part II , 2005, MICCAI.

[4]  B. Silverman,et al.  Density Estimation for Statistics and Data Analysis , 1987 .

[5]  Alejandro F Frangi,et al.  Automatic construction of 3-D statistical deformation models of the brain using nonrigid registration , 2003, IEEE Transactions on Medical Imaging.

[6]  Guy Marchal,et al.  Multimodality image registration by maximization of mutual information , 1997, IEEE Transactions on Medical Imaging.

[7]  David R. Haynor,et al.  PET-CT image registration in the chest using free-form deformations , 2003, IEEE Transactions on Medical Imaging.

[8]  L. R. Dice Measures of the Amount of Ecologic Association Between Species , 1945 .

[9]  Stephen R. Marsland,et al.  Groupwise Non-rigid Registration Using Polyharmonic Clamped-Plate Splines , 2003, MICCAI.

[10]  Terry M. Peters,et al.  Medical Image Computing and Computer-Assisted Intervention - MICCAI 2003 , 2003, Lecture Notes in Computer Science.

[11]  Brian Everitt,et al.  Cluster analysis , 1974 .

[12]  Juha Koikkalainen,et al.  Model Library for Deformable Model-Based Segmentation of 3-D Brain MR-Images , 2002, MICCAI.

[13]  Peter Lorenzen,et al.  Unbiased Atlas Formation Via Large Deformations Metric Mapping , 2005, MICCAI.

[14]  Paul A. Viola,et al.  Multi-modal volume registration by maximization of mutual information , 1996, Medical Image Anal..

[15]  Yizong Cheng,et al.  Mean Shift, Mode Seeking, and Clustering , 1995, IEEE Trans. Pattern Anal. Mach. Intell..

[16]  R W Cox,et al.  Software tools for analysis and visualization of fMRI data , 1997, NMR in biomedicine.

[17]  Larry D. Hostetler,et al.  The estimation of the gradient of a density function, with applications in pattern recognition , 1975, IEEE Trans. Inf. Theory.

[18]  Colin Studholme,et al.  A template free approach to volumetric spatial normalization of brain anatomy , 2004, Pattern Recognit. Lett..

[19]  William M. Wells,et al.  A Marginalized MAP Approach and EM Optimization for Pair-Wise Registration , 2007, IPMI.

[20]  Alfred O. Hero,et al.  Least Biased Target Selection in Probabilistic Atlas Construction , 2005, MICCAI.

[21]  Daniel Rueckert,et al.  Consistent groupwise non-rigid registration for atlas construction , 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

[22]  W. Eric L. Grimson,et al.  Efficient Population Registration of 3D Data , 2005, CVBIA.

[23]  Pierre Hellier,et al.  Level Set Methods in an EM Framework for Shape Classification and Estimation , 2004, International Conference on Medical Image Computing and Computer-Assisted Intervention.

[24]  Abraham Z. Snyder,et al.  A unified approach for morphometric and functional data analysis in young, old, and demented adults using automated atlas-based head size normalization: reliability and validation against manual measurement of total intracranial volume , 2004, NeuroImage.

[25]  Dorin Comaniciu,et al.  Mean Shift: A Robust Approach Toward Feature Space Analysis , 2002, IEEE Trans. Pattern Anal. Mach. Intell..

[26]  Dorin Comaniciu,et al.  Real-time tracking of non-rigid objects using mean shift , 2000, Proceedings IEEE Conference on Computer Vision and Pattern Recognition. CVPR 2000 (Cat. No.PR00662).

[27]  John W. Sammon,et al.  A Nonlinear Mapping for Data Structure Analysis , 1969, IEEE Transactions on Computers.