Evolution of Ancient Functions in the Vertebrate Insulin-Like Growth Factor System Uncovered by Study of Duplicated Salmonid Fish Genomes
暂无分享,去创建一个
I. Johnston | D. Garcia de la serrana | D. Macqueen | D. García de la Serrana | Daniel J. Macqueen | Ian A. Johnston
[1] I. Johnston,et al. Development Temperature Has Persistent Effects on Muscle Growth Responses in Gilthead Sea Bream , 2012, PloS one.
[2] B. Turner. Evolutionary Genetics of Fishes , 2012, Monographs in Evolutionary Biology.
[3] Peter C. Wainwright,et al. Resolution of ray-finned fish phylogeny and timing of diversification , 2012, Proceedings of the National Academy of Sciences.
[4] Teppei Yamaguchi,et al. Circulating salmon 28- and 22-kDa insulin-like growth factor binding proteins (IGFBPs) are co-orthologs of IGFBP-1. , 2011, General and comparative endocrinology.
[5] M. Nei,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.
[6] I. Johnston,et al. The parallel evolution of dwarfism in Arctic charr is accompanied by adaptive divergence in mTOR‐pathway gene expression , 2011, Molecular ecology.
[7] I. Johnston,et al. Growth and the regulation of myotomal muscle mass in teleost fish , 2011, Journal of Experimental Biology.
[8] W. Dickhoff,et al. Circulating salmon 41-kDa insulin-like growth factor binding protein (IGFBP) is not IGFBP-3 but an IGFBP-2 subtype. , 2011, General and comparative endocrinology.
[9] D. Larhammar,et al. Evolution of the insulin-like growth factor binding protein (IGFBP) family. , 2011, Endocrinology.
[10] Marco Biasini,et al. Toward the estimation of the absolute quality of individual protein structure models , 2010, Bioinform..
[11] I. Johnston,et al. Positioning the expanded akirin gene family of Atlantic salmon within the transcriptional networks of myogenesis. , 2010, Biochemical and biophysical research communications.
[12] Steven J. M. Jones,et al. Sequencing the genome of the Atlantic salmon (Salmo salar) , 2010, Genome Biology.
[13] I. Johnston,et al. A newly classified vertebrate calpain protease, directly ancestral to CAPN1 and 2, episodically evolved a restricted physiological function in placental mammals. , 2010, Molecular biology and evolution.
[14] I. Johnston,et al. Transcriptional Regulation of the IGF Signaling Pathway by Amino Acids and Insulin-Like Growth Factors during Myogenesis in Atlantic Salmon , 2010, PloS one.
[15] I. Johnston,et al. Functional Analysis of Sequence Variation Salmonid genomes have a remarkably expanded akirin family , coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism , 2010 .
[16] Z. Du,et al. Duplicated zebrafish insulin‐like growth factor binding protein‐5 genes with split functional domains: evidence for evolutionarily conserved IGF binding, nuclear localization, and transactivation activity , 2010, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[17] Tal Pupko,et al. GUIDANCE: a web server for assessing alignment confidence scores , 2010, Nucleic Acids Res..
[18] Steven J. M. Jones,et al. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome , 2010, BMC Genomics.
[19] A. Meyer,et al. The evolutionary significance of ancient genome duplications , 2009, Nature Reviews Genetics.
[20] Pascal Benkert,et al. QMEAN server for protein model quality estimation , 2009, Nucleic Acids Res..
[21] Weerayuth Kittichotirat,et al. Protinfo PPC: A web server for atomic level prediction of protein complexes , 2009, Nucleic Acids Res..
[22] P. Yamada,et al. Perspectives in mammalian IGFBP-3 biology: local vs. systemic action. , 2009, American journal of physiology. Cell physiology.
[23] V. Beneš,et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. , 2009, Clinical chemistry.
[24] A. Moorman,et al. Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data , 2009, Nucleic acids research.
[25] Richard G. Taylor,et al. Switching to fast growth: the insulin-like growth factor (IGF) system in skeletal muscle of Atlantic salmon , 2008, Journal of Experimental Biology.
[26] Jianfeng Zhou,et al. Duplication of the IGFBP-2 Gene in Teleost Fish: Protein Structure and Functionality Conservation and Gene Expression Divergence , 2008, PloS one.
[27] Kenneth H. Wolfe,et al. Turning a hobby into a job: How duplicated genes find new functions , 2008, Nature Reviews Genetics.
[28] P. Yin,et al. IGFBP-5 regulates muscle cell differentiation by binding to IGF-II and switching on the IGF-II auto-regulation loop , 2008, The Journal of cell biology.
[29] C. Oxvig,et al. Duplication and Diversification of the Hypoxia-Inducible IGFBP-1 Gene in Zebrafish , 2008, PloS one.
[30] I. Komuro,et al. IGFBP-4 is an inhibitor of canonical Wnt signalling required for cardiogenesis , 2008, Nature.
[31] Daniel Chourrout,et al. Differential evolution of the 13 Atlantic salmon Hox clusters. , 2008, Molecular biology and evolution.
[32] A. Löytynoja,et al. Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis , 2008, Science.
[33] Nicholas H. Putnam,et al. The amphioxus genome and the evolution of the chordate karyotype , 2008, Nature.
[34] S. Otto,et al. The Evolutionary Consequences of Polyploidy , 2007, Cell.
[35] R. Huber,et al. Structural basis for the inhibition of insulin-like growth factors by insulin-like growth factor-binding proteins , 2006, Proceedings of the National Academy of Sciences.
[36] Robert Huber,et al. Structural basis for the regulation of insulin-like growth factors by IGF binding proteins. , 2006, Structure.
[37] Hidetoshi Shimodaira,et al. Pvclust: an R package for assessing the uncertainty in hierarchical clustering , 2006, Bioinform..
[38] J. Gabillard,et al. Insulin-like growth factor-binding protein (IGFBP)-1, -2, -3, -4, -5, and -6 and IGFBP-related protein 1 during rainbow trout postvitellogenesis and oocyte maturation: molecular characterization, expression profiles, and hormonal regulation. , 2006, Endocrinology.
[39] B. Tönshoff,et al. Differential expression of IGF system components in proliferating vs. differentiating growth plate chondrocytes: the functional role of IGFBP-5. , 2006, American journal of physiology. Endocrinology and metabolism.
[40] Torsten Schwede,et al. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling , 2006, Bioinform..
[41] G. Booker,et al. Molecular interactions of the IGF system. , 2005, Cytokine & growth factor reviews.
[42] Burkhard Morgenstern,et al. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints , 2005, Nucleic Acids Res..
[43] C. Duan,et al. Roles of insulin-like growth factor (IGF) binding proteins in regulating IGF actions. , 2005, General and comparative endocrinology.
[44] S. Kajimura,et al. Insulin-like growth factor-binding protein-1 (IGFBP-1) mediates hypoxia-induced embryonic growth and developmental retardation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[45] Jeroen Raes,et al. Duplication and divergence: the evolution of new genes and old ideas. , 2004, Annual review of genetics.
[46] Charles E. Chapple,et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype , 2004, Nature.
[47] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[48] Claus Lindbjerg Andersen,et al. Normalization of Real-Time Quantitative Reverse Transcription-PCR Data: A Model-Based Variance Estimation Approach to Identify Genes Suited for Normalization, Applied to Bladder and Colon Cancer Data Sets , 2004, Cancer Research.
[49] R. Baxter,et al. Cellular actions of the insulin-like growth factor binding proteins. , 2002, Endocrine reviews.
[50] B. Tönshoff,et al. Differential effects of insulin-like growth factor binding proteins-1, -2, -3, and -6 on cultured growth plate chondrocytes. , 2002, Kidney international.
[51] Amos Bairoch,et al. PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors , 2002, Briefings Bioinform..
[52] A. Hoeflich,et al. IGF-binding protein-5: flexible player in the IGF system and effector on its own. , 2002, The Journal of endocrinology.
[53] D. Clemmons,et al. Use of mutagenesis to probe IGF-binding protein structure/function relationships. , 2001, Endocrine reviews.
[54] G. Ooi,et al. The acid-labile subunit (ALS) of the 150 kDa IGF-binding protein complex: an important but forgotten component of the circulating IGF system. , 2001, The Journal of endocrinology.
[55] K. H. Wolfe. Yesterday's polyploids and the mystery of diploidization , 2001, Nature Reviews Genetics.
[56] Z. Upton,et al. Comparison of recombinant barramundi and human insulin-like growth factor (IGF)-I in juvenile barramundi (Lates calcarifer): in vivo metabolic effects, association with circulating IGF-binding proteins, and tissue localisation. , 2000, General and comparative endocrinology.
[57] J. Melo,et al. The effect of food deprivation and refeeding on the liver, thyroid hormones and transthyretin in sea bream , 2000 .
[58] C. Mallows. Some Comments on Cp , 2000, Technometrics.
[59] Jun Ding,et al. Insulin-like growth factor binding protein 2 is a growth inhibitory protein conserved in zebrafish. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[60] W. Dickhoff,et al. Free and protein-bound insulin-like growth factor-I (IGF-I) and IGF-binding proteins in plasma of coho salmon, Oncorhynchus kisutch. , 1999, General and comparative endocrinology.
[61] C. Renner,et al. Structure of the IGF‐binding domain of the insulin‐like growth factor‐binding protein‐5 (IGFBP‐5): implications for IGF and IGF‐I receptor interactions , 1998, The EMBO journal.
[62] S. Mohan,et al. Modulation of insulin‐like growth factor actions in L6A1 myoblasts by insulin‐like growth factor binding protein (IGFBP)‐4 and IGFBP‐5: A dual role for IGFBP‐5 , 1998, Journal of cellular physiology.
[63] D. Clemmons,et al. Differential Expression and Biological Effects of Insulin-like Growth Factor-binding Protein-4 and -5 in Vascular Smooth Muscle Cells* , 1998, The Journal of Biological Chemistry.
[64] L. Giudice,et al. Insulin-like Growth Factor Binding Protein-1: Recent Findings and New Directions , 1997, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.
[65] D. Clemmons,et al. Insulin-like growth factor (IGF)-binding proteins inhibit the smooth muscle cell migration responses to IGF-I and IGF-II. , 1995, Endocrinology.
[66] D. Clemmons,et al. Insulin-like growth factors and their binding proteins: biological actions. , 1995, Endocrine reviews.
[67] L. Underwood,et al. Reduction of insulin-like growth factor-I (IGF-I) in protein-restricted rats is associated with differential regulation of IGF-binding protein messenger ribonucleic acids in liver and kidney, and peptides in liver and serum. , 1994, Endocrinology.
[68] R. Akers,et al. IGF-I-Induced IGFBP-3 potentiates the mitogenic actions of IGF-I in mammary epithelial MD-IGF-I cells , 1994, Molecular and Cellular Endocrinology.
[69] C. Roberts,et al. Isolation of a second nonallelic insulin-like growth factor I gene from the salmon genome. , 1994, DNA and cell biology.
[70] R. Devlin,et al. Duplicate insulin-like growth factor-I genes in salmon display alternative splicing pathways. , 1993, Molecular endocrinology.
[71] D. Steiner,et al. Evolution of insulin-like growth factor binding proteins. , 1993, Growth regulation.
[72] D. Andress,et al. Human osteoblast-derived insulin-like growth factor (IGF) binding protein-5 stimulates osteoblast mitogenesis and potentiates IGF action. , 1992, The Journal of biological chemistry.
[73] M. Rechler,et al. Transcription of the insulin-like growth factor-binding protein-2 gene is increased in neonatal and fasted adult rat liver. , 1992, Molecular endocrinology.
[74] C. Conover,et al. Potentiation of insulin-like growth factor (IGF) action by IGF-binding protein-3: studies of underlying mechanism. , 1992, Endocrinology.
[75] Dr. Susumu Ohno. Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.
[76] B. Koop,et al. Genomics and the Genome Duplication in Salmonids , 2008 .
[77] W. Dickhoff,et al. Measurement of circulating salmon IGF binding protein-1: assay development, response to feeding ration and temperature, and relation to growth parameters. , 2006, The Journal of endocrinology.
[78] S. Otto,et al. Polyploid incidence and evolution. , 2000, Annual review of genetics.
[79] T. A. Hall,et al. BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .
[80] L. Phillips,et al. Molecular regulation of insulin-like growth factor-I and its principal binding protein, IGFBP-3. , 1998, Progress in nucleic acid research and molecular biology.
[81] L. Underwood. Nutritional regulation of IGF-I and IGFBPs. , 1996, Journal of pediatric endocrinology & metabolism : JPEM.
[82] M. Rechler. Insulin-like growth factor binding proteins. , 1993, Vitamins and hormones.
[83] D. Clemmons,et al. Nutritional regulation of IGF-I and IGF binding proteins. , 1991, Annual review of nutrition.
[84] F. Allendorf,et al. Tetraploidy and the Evolution of Salmonid Fishes , 1984 .
[85] C. L. Mallows. Some comments on C_p , 1973 .