Retroelements and their impact on genome evolution and functioning
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[1] E. Kirkness,et al. Mobile elements create structural variation: analysis of a complete human genome. , 2009, Genome research.
[2] A. Buzdin,et al. Human-Specific Modulation of Transcriptional Activity Provided by Endogenous Retroviral Insertions , 2009, Journal of Virology.
[3] J. Casacuberta,et al. The Frequent Transcriptional Readthrough of the Tobacco Tnt1 Retrotransposon and Its Possible Implications for the Control of Resistance Genes , 2009, Journal of Molecular Evolution.
[4] D. Gautheret,et al. Using Alu elements as polyadenylation sites: A case of retroposon exaptation. , 2009, Molecular biology and evolution.
[5] M. Belfort,et al. The take and give between retrotransposable elements and their hosts. , 2008, Annual review of genetics.
[6] H. Kazazian,et al. Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites , 2008, Cell.
[7] Yi Xing,et al. Diverse Splicing Patterns of Exonized Alu Elements in Human Tissues , 2008, PLoS genetics.
[8] André Corvelo,et al. Exon creation and establishment in human genes , 2008, Genome Biology.
[9] G. Ast,et al. Intronic Alus Influence Alternative Splicing , 2008, PLoS genetics.
[10] O. R. Borodulina,et al. Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAA-dependent manner. , 2008, RNA.
[11] P. Georgiev,et al. Study of functional interaction between three copies of the insulator from the MDG4 transposable element in the model system of the miniwhite gene of Drosophila melanogaster , 2008, Doklady Biochemistry and Biophysics.
[12] B. Tian,et al. Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes , 2008, Nucleic acids research.
[13] I. King Jordan,et al. Retroviral promoters in the human genome , 2008, Bioinform..
[14] T. Eickbush,et al. The diversity of retrotransposons and the properties of their reverse transcriptases. , 2008, Virus research.
[15] D. Landsman,et al. Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA , 2008, BMC Genomics.
[16] D. Min,et al. Transcriptional regulation of GSDML gene by antisense-oriented HERV-H LTR element , 2008, Archives of Virology.
[17] R. Martienssen,et al. Epigenetic interactions between transposons and genes: lessons from plants. , 2008, Current opinion in genetics & development.
[18] P. Deininger,et al. The impact of multiple splice sites in human L1 elements. , 2008, Gene.
[19] N. Saitou,et al. Possible involvement of SINEs in mammalian-specific brain formation , 2008, Proceedings of the National Academy of Sciences.
[20] Ivan B. N. Clark,et al. Molecular dissection of Penelope transposable element regulatory machinery , 2008, Nucleic acids research.
[21] P. Deininger,et al. Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. , 2008, Genome research.
[22] G. Hannon,et al. Conserved themes in small-RNA-mediated transposon control. , 2008, Trends in cell biology.
[23] Jean-Nicolas Volff,et al. Transposable elements as drivers of genomic and biological diversity in vertebrates , 2008, Chromosome Research.
[24] Andrew B. Conley,et al. Human cis natural antisense transcripts initiated by transposable elements. , 2008, Trends in genetics : TIG.
[25] V. Khasdan,et al. Large-Scale Survey of Cytosine Methylation of Retrotransposons and the Impact of Readout Transcription From Long Terminal Repeats on Expression of Adjacent Rice Genes , 2007, Genetics.
[26] W. Theurkauf,et al. Biogenesis and germline functions of piRNAs , 2007, Development.
[27] Asaf Levy,et al. TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates , 2007, Nucleic Acids Res..
[28] A. Buzdin,et al. Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse transcription , 2007, BMC Genomics.
[29] M. Low,et al. Ancient Exaptation of a CORE-SINE Retroposon into a Highly Conserved Mammalian Neuronal Enhancer of the Proopiomelanocortin Gene , 2007, PLoS genetics.
[30] M. Kiefmann,et al. Can ID Repetitive Elements Serve as Cis-acting Dendritic Targeting Elements? An In Vivo Study , 2007, PLoS ONE.
[31] T. Tuschl,et al. Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline , 2007, Nucleic acids research.
[32] Gratien G. Prefontaine,et al. Developmentally Regulated Activation of a SINE B2 Repeat as a Domain Boundary in Organogenesis , 2007, Science.
[33] C. Bendixen,et al. Infertile Finnish Yorkshire boars carry a full-length LINE-1 retrotransposon within the KPL2 gene , 2007, Molecular Genetics and Genomics.
[34] A. Gentles,et al. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. , 2007, Genome research.
[35] A. Buzdin,et al. Chimeric retrogenes suggest a role for the nucleolus in LINE amplification , 2007, FEBS letters.
[36] H. Kazazian,et al. LINE-1 ORF1 Protein Localizes in Stress Granules with Other RNA-Binding Proteins, Including Components of RNA Interference RNA-Induced Silencing Complex , 2007, Molecular and Cellular Biology.
[37] G. Schumann. APOBEC3 proteins: major players in intracellular defence against LINE-1-mediated retrotransposition. , 2007, Biochemical Society transactions.
[38] N. Okada,et al. Functional splice sites in a zebrafish LINE and their influence on zebrafish gene expression. , 2007, Gene.
[39] S. Boissinot,et al. Selection against Line-1 Retrotransposons Results Principally from Their Ability to Mediate Ectopic Recombination , 2006 .
[40] R. Martienssen,et al. Transposable elements and the epigenetic regulation of the genome , 2007, Nature Reviews Genetics.
[41] A. Camargo,et al. Sense-antisense pairs in mammals: functional and evolutionary considerations , 2007, Genome Biology.
[42] M. Isamat,et al. Exonization of Alu-generated splice variants in the survivin gene of human and non-human primates. , 2007, Journal of molecular biology.
[43] H. Ozawa,et al. The first reported case of Menkes disease caused by an Alu insertion mutation , 2007, Brain and Development.
[44] E. Ostertag,et al. Current topics in genome evolution: Molecular mechanisms of new gene formation , 2007, Cellular and Molecular Life Sciences.
[45] I. King Jordan,et al. A Family of Human MicroRNA Genes from Miniature Inverted-Repeat Transposable Elements , 2007, PloS one.
[46] C. A. Dunn,et al. Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution , 2006, PLoS genetics.
[47] K. Nishikura,et al. Editor meets silencer: crosstalk between RNA editing and RNA interference , 2006, Nature Reviews Molecular Cell Biology.
[48] M. Batzer,et al. Emergence of primate genes by retrotransposon-mediated sequence transduction , 2006, Proceedings of the National Academy of Sciences.
[49] Anton Buzdin,et al. At Least 50% of Human-Specific HERV-K (HML-2) Long Terminal Repeats Serve In Vivo as Active Promoters for Host Nonrepetitive DNA Transcription , 2006, Journal of Virology.
[50] V. Ruda,et al. Identification, genome mapping, and CTCF binding of potential insulators within the FXYD5-COX7A1 locus of human Chromosome 19q13.12 , 2006, Mammalian Genome.
[51] Vetle I. Torvik,et al. Alu elements within human mRNAs are probable microRNA targets. , 2006, Trends in genetics : TIG.
[52] N. Eberhardt,et al. The human growth hormone gene contains a silencer embedded within an Alu repeat in the 3'-flanking region. , 2006, Molecular endocrinology.
[53] L. N. van de Lagemaat,et al. Multiple effects govern endogenous retrovirus survival patterns in human gene introns , 2006, Genome Biology.
[54] N. Yang,et al. L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells , 2006, Nature Structural &Molecular Biology.
[55] C. Sander,et al. A novel class of small RNAs bind to MILI protein in mouse testes , 2006, Nature.
[56] A. Smit,et al. Functional noncoding sequences derived from SINEs in the mammalian genome. , 2006, Genome research.
[57] Matthew D. Dyer,et al. Human genomic deletions mediated by recombination between Alu elements. , 2006, American journal of human genetics.
[58] S. Boissinot,et al. Fitness cost of LINE-1 (L1) activity in humans. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[59] M. Speek,et al. L1 Antisense Promoter Drives Tissue-Specific Transcription of Human Genes , 2006, Journal of biomedicine & biotechnology.
[60] Valer Gotea,et al. Do transposable elements really contribute to proteomes? , 2006, Trends in genetics : TIG.
[61] M. Lyon. Do LINEs Have a Role in X-Chromosome Inactivation? , 2006, Journal of biomedicine & biotechnology.
[62] N. Vinckenbosch,et al. Evolutionary fate of retroposed gene copies in the human genome. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[63] C. A. Dunn,et al. Transcription of two human genes from a bidirectional endogenous retrovirus promoter. , 2006, Gene.
[64] C. A. Dunn,et al. Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: the case of primate beta3GAL-T5. , 2005, Gene.
[65] E. Ostertag,et al. L1 integration in a transgenic mouse model. , 2005, Genome research.
[66] Jerilyn A. Walker,et al. SVA elements: a hominid-specific retroposon family. , 2005, Journal of molecular biology.
[67] J. Good,et al. Transposable Element Orientation Bias in the Drosophila melanogaster Genome , 2005, Journal of Molecular Evolution.
[68] Dixie L. Mager,et al. Retroviral Repeat Sequences , 2005 .
[69] H. U. Böhnert,et al. Transposition of MINE, a composite retrotransposon, in the avirulence gene ACE1 of the rice blast fungus Magnaporthe grisea. , 2005, Fungal genetics and biology : FG & B.
[70] J. V. Moran,et al. Multiple Fates of L1 Retrotransposition Intermediates in Cultured Human Cells , 2005, Molecular and Cellular Biology.
[71] Jeffrey S. Han,et al. Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution. , 2005, Genome research.
[72] Jeffrey S. Han,et al. LINE‐1 retrotransposons: Modulators of quantity and quality of mammalian gene expression? , 2005, BioEssays : news and reviews in molecular, cellular and developmental biology.
[73] R. Poulter,et al. DIRS-1 and the other tyrosine recombinase retrotransposons , 2005, Cytogenetic and Genome Research.
[74] I. Arkhipova,et al. Penelope-like elements – a new class of retroelements: distribution, function and possible evolutionary significance , 2005, Cytogenetic and Genome Research.
[75] Vetle I. Torvik,et al. Mammalian microRNAs derived from genomic repeats. , 2005, Trends in genetics : TIG.
[76] H. Soifer,et al. A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon , 2005, Nucleic acids research.
[77] Alexander Rich,et al. Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome , 2004, PLoS biology.
[78] N. Bannert,et al. Retroelements and the human genome: New perspectives on an old relation , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[79] A. Buzdin. Retroelements and formation of chimeric retrogenes , 2004, Cellular and Molecular Life Sciences CMLS.
[80] Jef D. Boeke,et al. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes , 2004, Nature.
[81] R. Poulter,et al. A new group of tyrosine recombinase-encoding retrotransposons. , 2004, Molecular biology and evolution.
[82] E. Ostertag,et al. SVA elements are nonautonomous retrotransposons that cause disease in humans. , 2003, American journal of human genetics.
[83] N. Maeda,et al. An intronic endogenous retrovirus-like sequence attenuates human haptoglobin-related gene expression in an orientation-dependent manner. , 2003, Gene.
[84] Dixie L Mager,et al. Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. , 2003, Trends in genetics : TIG.
[85] D. Tuan,et al. The ERV-9 LTR enhancer is not blocked by the HS5 insulator and synthesizes through the HS5 site non-coding, long RNAs that regulate LTR enhancer function. , 2003, Nucleic acids research.
[86] Anton Buzdin,et al. The human genome contains many types of chimeric retrogenes generated through in vivo RNA recombination. , 2003, Nucleic acids research.
[87] J. Jurka,et al. Molecular paleontology of transposable elements in the Drosophila melanogaster genome , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[88] W. Lim,et al. Complex inheritance of familial hypercholanemia with associated mutations in TJP2 and BAAT , 2003, Nature Genetics.
[89] J. V. Moran,et al. Hot L1s account for the bulk of retrotransposition in the human population , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[90] L. Duret,et al. Placenta-Specific INSL4 Expression Is Mediated by a Human Endogenous Retrovirus Element1 , 2003, Biology of reproduction.
[91] J. Landry,et al. The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter. , 2002, Molecular biology and evolution.
[92] L. N. van de Lagemaat,et al. Retroelement distributions in the human genome: variations associated with age and proximity to genes. , 2002, Genome research.
[93] Dan Graur,et al. Alu-containing exons are alternatively spliced. , 2002, Genome research.
[94] J. V. Moran,et al. DNA repair mediated by endonuclease-independent LINE-1 retrotransposition , 2002, Nature Genetics.
[95] C. Ufer,et al. Discovery of a functional retrotransposon of the murine phospholipid hydroperoxide glutathione peroxidase: chromosomal localization and tissue-specific expression pattern. , 2002, Genomics.
[96] D. Tuan,et al. The Solitary Long Terminal Repeats of ERV-9 Endogenous Retrovirus Are Conserved during Primate Evolution and Possess Enhancer Activities in Embryonic and Hematopoietic Cells , 2002, Journal of Virology.
[97] G. Bernardi,et al. Similar integration but different stability of Alus and LINEs in the human genome. , 2001, Gene.
[98] J. Landry,et al. Repetitive elements in the 5' untranslated region of a human zinc-finger gene modulate transcription and translation efficiency. , 2001, Genomics.
[99] David C. Hughes. Alternative Splicing of the Human VEGFGR-3/FLT4 Gene as a Consequence of an Integrated Human Endogenous Retrovirus , 2001, Journal of Molecular Evolution.
[100] T. Eickbush,et al. Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. , 2001, Genome research.
[101] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[102] Jef D. Boeke,et al. Human L1 Retrotransposition: cisPreference versus trans Complementation , 2001, Molecular and Cellular Biology.
[103] J. Landry,et al. Long Terminal Repeats Are Used as Alternative Promoters for the Endothelin B Receptor and Apolipoprotein C-I Genes in Humans* , 2001, The Journal of Biological Chemistry.
[104] W. Makałowski,et al. Genomic scrap yard: how genomes utilize all that junk. , 2000, Gene.
[105] P. Vogt,et al. Two long homologous retroviral sequence blocks in proximal Yq11 cause AZFa microdeletions as a result of intrachromosomal recombination events. , 2000, Human molecular genetics.
[106] R. Hehlmann,et al. HERV-K-T47D-Related long terminal repeats mediate polyadenylation of cellular transcripts. , 2000, Genomics.
[107] J. Deragon,et al. SINE Retroposons Can Be Used In Vivo as Nucleation Centers for De Novo Methylation , 2000, Molecular and Cellular Biology.
[108] Y. Lebedev,et al. Solitary HERV‐K LTRs possess bi‐directional promoter activity and contain a negative regulatory element in the U5 region , 2000, FEBS letters.
[109] M. Boguski,et al. Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. , 2000, Genome research.
[110] Thierry Heidmann,et al. Human LINE retrotransposons generate processed pseudogenes , 2000, Nature Genetics.
[111] E. Ostertag,et al. Transduction of 3'-flanking sequences is common in L1 retrotransposition. , 2000, Human molecular genetics.
[112] E. Sverdlov,et al. Retroviruses and primate evolution. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[113] P. Singh,et al. Identification and characterization of a transcriptional silencer upstream of the human BRCA2 gene. , 1999, Biochemical and biophysical research communications.
[114] L. Salford,et al. HERV-F (XA34) is a full-length human endogenous retrovirus expressed in placental and fetal tissues. , 1999, Gene.
[115] M. Long,et al. Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila. , 1999, Gene.
[116] J. Brosius,et al. RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. , 1999, Gene.
[117] S. Moss,et al. A conserved nuclear element with a role in mammalian gene regulation. , 1999, Human molecular genetics.
[118] D. Mager,et al. Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3). , 1999, Genomics.
[119] P. Kloetzel,et al. A second gene encoding the mouse proteasome activator PA28beta subunit is part of a LINE1 element and is driven by a LINE1 promoter. , 1999, Journal of molecular biology.
[120] J. V. Moran,et al. Exon shuffling by L1 retrotransposition. , 1999, Science.
[121] D. Tuan,et al. A long terminal repeat of the human endogenous retrovirus ERV-9 is located in the 5' boundary area of the human beta-globin locus control region. , 1998, Genomics.
[122] J. V. Moran,et al. The impact of L1 retrotransposons on the human genome , 1998, Nature Genetics.
[123] B. Burwinkel,et al. Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease. , 1998, Journal of molecular biology.
[124] R. Lawn,et al. Apolipoprotein(a) Gene Enhancer Resides within a LINE Element* , 1998, The Journal of Biological Chemistry.
[125] Stephen B. Baylin,et al. Mapping Patterns of CpG Island Methylation in Normal and Neoplastic Cells Implicates Both Upstream and Downstream Regions inde Novo Methylation* , 1997, The Journal of Biological Chemistry.
[126] C. Walsh,et al. Cytosine methylation and the ecology of intragenomic parasites. , 1997, Trends in genetics : TIG.
[127] A. Furano,et al. Recombination creates novel L1 (LINE-1) elements in Rattus norvegicus. , 1997, Genetics.
[128] J. Jurka,et al. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[129] Jef D Boeke,et al. High Frequency Retrotransposition in Cultured Mammalian Cells , 1996, Cell.
[130] Jef D Boeke,et al. Human L1 Retrotransposon Encodes a Conserved Endonuclease Required for Retrotransposition , 1996, Cell.
[131] N. Okada,et al. The 3' ends of tRNA-derived short interspersed repetitive elements are derived from the 3' ends of long interspersed repetitive elements , 1996, Molecular and cellular biology.
[132] C. Y. Yu,et al. Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region. Molecular cloning, exon-intron structure, composite retroposon, and breakpoint of gene duplication. , 1994, The Journal of biological chemistry.
[133] P. Kavathas,et al. Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene , 1993, Molecular and cellular biology.
[134] H. Temin,et al. Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[135] D. Dorsett. Distance-independent inactivation of an enhancer by the suppressor of Hairy-wing DNA-binding protein of Drosophila. , 1993, Genetics.
[136] T. Eickbush,et al. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition , 1993, Cell.
[137] T. Eickbush. Transposing without ends: the non-LTR retrotransposable elements. , 1992, The New biologist.
[138] M. Batzer,et al. Evolution of the master Alu gene(s) , 1991, Journal of Molecular Evolution.
[139] H. S. Kim,et al. Three independent insertions of retrovirus-like sequences in the haptoglobin gene cluster of primates. , 1990, Genomics.
[140] J. Stavenhagen,et al. A complex androgen-responsive enhancer resides 2 kilobases upstream of the mouse Slp gene , 1988, Molecular and cellular biology.
[141] S. Antonarakis,et al. Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man , 1988, Nature.
[142] V. Walbot,et al. DNA modification of a maize transposable element correlates with loss of activity. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[143] H. Lodish,et al. Sequence of Dictyostelium DIRS-1: An apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence , 1985, Cell.
[144] N. Maeda,et al. Nucleotide sequence of the haptoglobin and haptoglobin-related gene pair. The haptoglobin-related gene contains a retrovirus-like element. , 1985, The Journal of biological chemistry.
[145] A. Cassidy,et al. Hypomethylation of retrotransposable elements correlates with genomic instability in non‐small cell lung cancer , 2009, International journal of cancer.
[146] A. Buzdin,et al. GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats , 2006, Nucleic acids research.
[147] Richard Cordaux,et al. Estimating the retrotransposition rate of human Alu elements. , 2006, Gene.
[148] W. Seifarth,et al. Evolution and biological significance of human retroelements , 2005, Virus Genes.
[149] Jürgen Brosius,et al. Genomes were forged by massive bombardments with retroelements and retrosequences , 2004, Genetica.
[150] Takashi Sado,et al. Large-scale identification and mapping of nuclear matrix-attachment regions in the distal imprinted domain of mouse chromosome 7. , 2004, DNA research : an international journal for rapid publication of reports on genes and genomes.
[151] A. Furano,et al. The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons. , 2000, Progress in nucleic acid research and molecular biology.
[152] A. Ballabio,et al. LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosis. , 1999, American journal of human genetics.
[153] L. Girard,et al. Regulatory changes as a consequence of transposon insertion. , 1999, Developmental genetics.
[154] S. Wessler. Transposable elements and the evolution of gene expression. , 1998, Symposia of the Society for Experimental Biology.
[155] M. Meisler,et al. The remarkable evolutionary history of the human amylase genes. , 1993, Critical reviews in oral biology and medicine : an official publication of the American Association of Oral Biologists.
[156] A. Weiner,et al. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. , 1986, Annual review of biochemistry.
[157] B. Mcclintock,et al. Controlling elements and the gene. , 1956, Cold Spring Harbor symposia on quantitative biology.