Whole transcriptome RNA-Seq allelic expression in human brain
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Wolfgang Sadee | Amy Webb | Ryan M. Smith | W. Sadee | J. Oberdick | S. Handelman | A. Papp | A. Webb | Samuel K Handelman | John Oberdick | Ryan M Smith | Audrey C Papp | Leslie C Newman | Adam Suhy | Roshan Mascarenhas | L. Newman | Roshan Mascarenhas | Adam Suhy
[1] W. Sadee,et al. Searching for polymorphisms that affect gene expression and mRNA processing: Example ABCB1 (MDR1) , 2006, The AAPS Journal.
[2] Jacek Majewski,et al. The study of eQTL variations by RNA-seq: from SNPs to phenotypes. , 2011, Trends in genetics : TIG.
[3] J. Leek,et al. Temporal dynamics and genetic control of transcription in the human prefrontal cortex , 2011, Nature.
[4] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[5] Ruijie Liu,et al. Allele-specific expression analysis methods for high-density SNP microarray data , 2012, Bioinform..
[6] D. Stephan,et al. A survey of genetic human cortical gene expression , 2007, Nature Genetics.
[7] Wolfgang Viechtbauer,et al. Conducting Meta-Analyses in R with the metafor Package , 2010 .
[8] Jacek Majewski,et al. Genome-wide analysis of transcript isoform variation in humans , 2008, Nature Genetics.
[9] David I. Smith,et al. Tumor Transcriptome Sequencing Reveals Allelic Expression Imbalances Associated with Copy Number Alterations , 2010, PloS one.
[10] John D. Storey,et al. Mapping the Genetic Architecture of Gene Expression in Human Liver , 2008, PLoS biology.
[11] T. Mikkelsen,et al. Altered adenosine-to-inosine RNA editing in human cancer. , 2007, Genome research.
[12] Stanley F. Nelson,et al. Identification of allele-specific alternative mRNA processing via transcriptome sequencing , 2012, Nucleic acids research.
[13] L. Saksida,et al. Assessment of Glutamate Transporter GLAST (EAAT1)-Deficient Mice for Phenotypes Relevant to the Negative and Executive/Cognitive Symptoms of Schizophrenia , 2009, Neuropsychopharmacology.
[14] A. Malhotra,et al. Dopamine Transporter Gene Variant Affecting Expression in Human Brain is Associated with Bipolar Disorder , 2011, Neuropsychopharmacology.
[15] Daniel A. Skelly,et al. A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data. , 2011, Genome research.
[16] Mats Ensterö,et al. Large-scale mRNA sequencing determines global regulation of RNA editing during brain development. , 2009, Genome research.
[17] E. Levanon,et al. Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats , 2010, BMC Genomics.
[18] Joseph K. Pickrell,et al. Understanding mechanisms underlying human gene expression variation with RNA sequencing , 2010, Nature.
[19] Mee Hyang Ko,et al. Bioimaging of the unbalanced expression of microRNA9 and microRNA9* during the neuronal differentiation of P19 cells , 2008, The FEBS journal.
[20] W. Sadee,et al. Allelic expression of serotonin transporter (SERT) mRNA in human pons: lack of correlation with the polymorphism SERTLPR , 2006, Molecular Psychiatry.
[21] Andrew D. Johnson,et al. Allelic Expression Imbalance of Human mu Opioid Receptor (OPRM1) Caused by Variant A118G* , 2005, Journal of Biological Chemistry.
[22] Shirley A. Miller,et al. A simple salting out procedure for extracting DNA from human nucleated cells. , 1988, Nucleic acids research.
[23] R. Baloh,et al. Mutation in the glutamate transporter EAAT1 causes episodic ataxia, hemiplegia, and seizures , 2005, Neurology.
[24] W. Sadee,et al. Tryptophan hydroxylase 2 (TPH2) haplotypes predict levels of TPH2 mRNA expression in human pons , 2007, Molecular Psychiatry.
[25] Mathieu Blanchette,et al. Global patterns of cis variation in human cells revealed by high-density allelic expression analysis , 2009, Nature Genetics.
[26] D. Clayton,et al. Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing , 2009, Human molecular genetics.
[27] Joaquín Goñi,et al. Allele-Specific Gene Expression Is Widespread Across the Genome and Biological Processes , 2009, PloS one.
[28] Ryan M. Smith,et al. Nicotinic α5 receptor subunit mRNA expression is associated with distant 5′ upstream polymorphisms , 2011, European Journal of Human Genetics.
[29] Identifying breast cancer risk loci by global differential allele-specific expression (DASE) analysis in mammary epithelial transcriptome , 2012, BMC Genomics.
[30] Wenwei Zhang,et al. Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome , 2012, Nature Biotechnology.
[31] L. Liang,et al. A genome-wide association study of global gene expression , 2007, Nature Genetics.
[32] Jian Wang,et al. Next-generation DNA sequencing-based assay for measuring allelic expression imbalance (AEI) of candidate neuropsychiatric disorder genes in human brain , 2011, BMC Genomics.
[33] Leonardo Fazio,et al. Polymorphisms in human dopamine D2 receptor gene affect gene expression, splicing, and neuronal activity during working memory , 2007, Proceedings of the National Academy of Sciences.
[34] N. Alon,et al. Monoallelic expression determines oncogenic progression and outcome in benign and malignant brain tumors. , 2012, Cancer research.
[35] Michael Krawczak,et al. Statistical inference of allelic imbalance from transcriptome data , 2011, Human mutation.
[36] M. Gerstein,et al. AlleleSeq: analysis of allele-specific expression and binding in a network framework , 2011, Molecular systems biology.
[37] Kasia Wilczek,et al. Role of miRNAs in Neuronal Differentiation from Human Embryonic Stem Cell—Derived Neural Stem Cells , 2012, Stem Cell Reviews and Reports.
[38] Ryan M. Smith,et al. Multiple Regulatory Variants Modulate Expression of 5-Hydroxytryptamine 2A Receptors in Human Cortex , 2013, Biological Psychiatry.
[39] W. Sadee,et al. Allelic mRNA expression of X-linked monoamine oxidase a (MAOA) in human brain: dissection of epigenetic and genetic factors. , 2006, Human molecular genetics.
[40] Andrew D. Johnson,et al. Polymorphisms affecting gene transcription and mRNA processing in pharmacogenetic candidate genes: detection through allelic expression imbalance in human target tissues , 2008, Pharmacogenetics and genomics.
[41] Andrew D. Johnson,et al. RNA Structures Affected By Single Nucleotide Polymorphisms In Transcribed Regions Of The Human Genome , 2011 .
[42] Liang Chen. Characterization and comparison of human nuclear and cytosolic editomes , 2013, Proceedings of the National Academy of Sciences.
[43] John C. Marioni,et al. Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data , 2009, Bioinform..
[44] H. Hakonarson,et al. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data , 2010, Nucleic acids research.
[45] Doron Lancet,et al. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification , 2005, Bioinform..
[46] J. Rinn,et al. Modular regulatory principles of large non-coding RNAs , 2012, Nature.
[47] K. Gunderson,et al. Genome-wide assessment of imprinted expression in human cells , 2011, Genome Biology.
[48] P. Sullivan,et al. Quantitative Analysis of Focused A-To-I RNA Editing Sites by Ultra-High-Throughput Sequencing in Psychiatric Disorders , 2012, PloS one.
[49] Luigi Ferrucci,et al. Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain , 2010, PLoS genetics.
[50] Pavel V. Baranov,et al. Darned in 2013: inclusion of model organisms and linking with Wikipedia , 2012, Nucleic Acids Res..
[51] J. Shendure,et al. Global survey of escape from X inactivation by RNA-sequencing in mouse. , 2010, Genome research.
[52] C. Molony,et al. Genetic analysis of genome-wide variation in human gene expression , 2004, Nature.
[53] J. Reifman,et al. A new strategy to reduce allelic bias in RNA-Seq readmapping , 2012, Nucleic acids research.
[54] W. Sadee,et al. Human N-acetyltransferase 1 *10 and *11 alleles increase protein expression through distinct mechanisms and associate with sulfamethoxazole-induced hypersensitivity , 2011, Pharmacogenetics and genomics.
[55] P. Hevezi,et al. Gene expression analyses reveal molecular relationships among 20 regions of the human CNS , 2006, Neurogenetics.
[56] Jae-Hyung Lee,et al. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. , 2012, Genome research.