Serial Femtosecond Crystallography of G Protein–Coupled Receptors

G Structures G protein–coupled receptors (GPCRs) are eukaryotic membrane proteins that have a central role in cellular communication and have become key drug targets. To overcome the difficulties of growing GPCRs crystals, Liu et al. (p. 1521) used an x-ray free-electron laser to determine a high-resolution structure of the serotonin receptor from microcrystals. The structure of a human serotonin receptor was solved using a free-electron laser to analyze microcrystals. X-ray crystallography of G protein–coupled receptors and other membrane proteins is hampered by difficulties associated with growing sufficiently large crystals that withstand radiation damage and yield high-resolution data at synchrotron sources. We used an x-ray free-electron laser (XFEL) with individual 50-femtosecond-duration x-ray pulses to minimize radiation damage and obtained a high-resolution room-temperature structure of a human serotonin receptor using sub-10-micrometer microcrystals grown in a membrane mimetic matrix known as lipidic cubic phase. Compared with the structure solved by using traditional microcrystallography from cryo-cooled crystals of about two orders of magnitude larger volume, the room-temperature XFEL structure displays a distinct distribution of thermal motions and conformations of residues that likely more accurately represent the receptor structure and dynamics in a cellular environment.

[1]  Andrei L. Lomize,et al.  OPM: Orientations of Proteins in Membranes database , 2006, Bioinform..

[2]  Masaki Yamamoto,et al.  Micro-crystallography comes of age. , 2012, Current opinion in structural biology.

[3]  P. Andrew Karplus,et al.  Linking Crystallographic Model and Data Quality , 2012, Science.

[4]  J. Ashby References and Notes , 1999 .

[5]  P. Emsley,et al.  Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.

[6]  J. Rosenbusch,et al.  Lipidic cubic phases: a novel concept for the crystallization of membrane proteins. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[7]  R. Stevens,et al.  Structural Features for Functional Selectivity at Serotonin Receptors , 2013, Science.

[8]  Georg Weidenspointner,et al.  Femtosecond X-ray protein nanocrystallography , 2011, Nature.

[9]  Elspeth F. Garman,et al.  Radiation damage in macromolecular crystallography: what is it and why should we care? , 2010, Acta crystallographica. Section D, Biological crystallography.

[10]  A. W. Pryor,et al.  Thermal vibrations in crystallography , 1975 .

[11]  Sébastien Boutet,et al.  The Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS) , 2010 .

[12]  Anton Barty,et al.  Natively Inhibited Trypanosoma brucei Cathepsin B Structure Determined by Using an X-ray Laser , 2013, Science.

[13]  Albert C. Pan,et al.  Molecular determinants of drug-receptor binding kinetics. , 2013, Drug discovery today.

[14]  Sébastien Boutet,et al.  The CSPAD megapixel x-ray camera at LCLS , 2012, Other Conferences.

[15]  R. Stevens,et al.  High-Resolution Crystal Structure of an Engineered Human β2-Adrenergic G Protein–Coupled Receptor , 2007, Science.

[16]  Georg Weidenspointner,et al.  Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements , 2011, Nature Photonics.

[17]  Ruth Nussinov,et al.  Close‐Range Electrostatic Interactions in Proteins , 2002, Chembiochem : a European journal of chemical biology.

[18]  Garth J. Williams,et al.  High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography , 2012, Science.

[19]  Michel Bouvier,et al.  Restructuring G-Protein- Coupled Receptor Activation , 2012, Cell.

[20]  M. Caffrey,et al.  A simple mechanical mixer for small viscous lipid-containing samples. , 1998, Chemistry and physics of lipids.

[21]  Anton Barty,et al.  Crystallographic data processing for free-electron laser sources , 2013, Acta crystallographica. Section D, Biological crystallography.

[22]  Albert J. M. Duisenberg,et al.  Indexing in single‐crystal diffractometry with an obstinate list of reflections , 1992 .

[23]  R. Stevens,et al.  Structure-function of the G protein-coupled receptor superfamily. , 2013, Annual review of pharmacology and toxicology.

[24]  V. Cherezov Lipidic cubic phase technologies for membrane protein structural studies. , 2011, Current opinion in structural biology.

[25]  V. Cherezov,et al.  Rational design of lipid for membrane protein crystallization. , 2004, Journal of structural biology.

[26]  A. Elcock The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins. , 1998, Journal of molecular biology.

[27]  Garth J Simpson,et al.  Nonlinear optical imaging of integral membrane protein crystals in lipidic mesophases. , 2010, Analytical chemistry.

[28]  Randy J. Read,et al.  Phaser crystallographic software , 2007, Journal of applied crystallography.

[29]  V. Cherezov,et al.  Crystallizing membrane proteins using lipidic mesophases , 2009, Nature Protocols.

[30]  Avinash Peddi,et al.  Electronic Reprint Biological Crystallography a Robotic System for Crystallizing Membrane and Soluble Proteins in Lipidic Mesophases Biological Crystallography a Robotic System for Crystallizing Membrane and Soluble Proteins in Lipidic Mesophases , 2022 .

[31]  Martin Caffrey,et al.  Membrane protein structure determination using crystallography and lipidic mesophases: recent advances and successes. , 2012, Biochemistry.

[32]  S. Rasmussen,et al.  Structure of a nanobody-stabilized active state of the β2 adrenoceptor , 2010, Nature.

[33]  Garth J. Williams,et al.  Ultra-precise characterization of LCLS hard X-ray focusing mirrors by high resolution slope measuring deflectometry. , 2012, Optics express.

[34]  M. Caffrey,et al.  The phase diagram of the monoolein/water system: metastability and equilibrium aspects. , 2000, Biomaterials.

[35]  M. Babu,et al.  Molecular signatures of G-protein-coupled receptors , 2013, Nature.

[36]  Randy J. Read,et al.  Acta Crystallographica Section D Biological , 2003 .

[37]  Anton Barty,et al.  Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals. , 2011, Acta crystallographica. Section A, Foundations of crystallography.

[38]  Nathaniel Echols,et al.  Accessing protein conformational ensembles using room-temperature X-ray crystallography , 2011, Proceedings of the National Academy of Sciences.