FPGA-based Stochastic Biochemical Simulator
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Hiroaki Kitano | Yuichiro Shibata | Yasunori Osana | Masato Yoshimi | Noriko Hiroi | Akira Funahashi | Yuri Nishikawa | Toshinori Kojima | Naoki Iwanaga | Yo Iwaoka
[1] Masaru Tomita,et al. A multi-algorithm, multi-timescale method for cell simulation , 2004, Bioinform..
[2] Takuji Nishimura,et al. Mersenne twister: a 623-dimensionally equidistributed uniform pseudo-random number generator , 1998, TOMC.
[3] L M Loew,et al. A general computational framework for modeling cellular structure and function. , 1997, Biophysical journal.
[4] Yiannis Kaznessis,et al. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions. , 2005, The Journal of chemical physics.
[5] Kris Gaj,et al. An embedded true random number generator for FPGAs , 2004, FPGA '04.
[6] Michael A. Gibson,et al. Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels , 2000 .
[7] D. Gillespie. Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .
[8] Hideharu Amano,et al. An FPGA-Based Acceleration Method for Metabolic Simulation , 2004, IEICE Trans. Inf. Syst..
[9] Masaru Tomita,et al. E-CELL: software environment for whole-cell simulation , 1999, Bioinform..
[10] John F. Keane,et al. A compiled accelerator for biological cell signaling simulations , 2004, FPGA '04.
[11] Andrzej M. Kierzek,et al. STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm , 2002, Bioinform..
[12] Larry Lok. The need for speed in stochastic simulation , 2004, Nature Biotechnology.
[13] H. Kitano,et al. A comprehensive pathway map of epidermal growth factor receptor signaling , 2005, Molecular systems biology.
[14] Hong Li,et al. Efficient formulation of the stochastic simulation algorithm for chemically reacting systems. , 2004, The Journal of chemical physics.
[15] Hideharu Amano,et al. Stochastic Simulation for Biochemical Reactions on FPGA , 2004, FPL.
[16] Lukasz Salwinski,et al. In silico simulation of biological network dynamics , 2004, Nature Biotechnology.