Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena.

[1]  S. Pongor,et al.  The role of DNA bending in Cro protein-DNA interactions. , 1997, Biophysical chemistry.

[2]  M. A. El Hassan,et al.  Structure and conformation of helical nucleic acids: rebuilding program (SCHNArP). , 1997, Journal of molecular biology.

[3]  S. Pongor,et al.  Distribution of sequence‐dependent curvature in genomic DNA sequences , 1997, FEBS letters.

[4]  G. Längst,et al.  Structural analysis of mouse rDNA: coincidence between nuclease hypersensitive sites, DNA curvature and regulatory elements in the intergenic spacer. , 1997, Nucleic acids research.

[5]  J. Langowski,et al.  Curvature and sequence analysis of eukaryotic promoters. , 1997, Journal of biomolecular structure & dynamics.

[6]  S. Pongor,et al.  Anisotropic elastic bending models of DNA , 1996 .

[7]  S. Pongor,et al.  Correlation of intrinsic DNA curvature with DNA property periodicity , 1996, FEBS letters.

[8]  S. Pongor,et al.  Distribution of bending propensity in DNA sequences , 1996, FEBS letters.

[9]  S C Harvey,et al.  Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature. , 1996, Nucleic acids research.

[10]  C. Calladine,et al.  A useful role for "static" models in elucidating the behaviour of DNA in solution. , 1996, Journal of molecular biology.

[11]  J. Langowski,et al.  DNA supercoiling, localized bending and thermal fluctuations. , 1996, Trends in biochemical sciences.

[12]  K Rippe,et al.  Action at a distance: DNA-looping and initiation of transcription. , 1995, Trends in biochemical sciences.

[13]  I. Brukner,et al.  Trinucleotide models for DNA bending propensity: comparison of models based on DNaseI digestion and nucleosome packaging data. , 1995, Journal of biomolecular structure & dynamics.

[14]  C R Calladine,et al.  The assessment of the geometry of dinucleotide steps in double-helical DNA; a new local calculation scheme. , 1995, Journal of molecular biology.

[15]  I. Brukner,et al.  Sequence‐dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides. , 1995, The EMBO journal.

[16]  V. Zhurkin,et al.  B-DNA twisting correlates with base-pair morphology. , 1995, Journal of molecular biology.

[17]  Nikolai B. Ulyanov,et al.  [4] Statistical analysis of DNA duplex structural features , 1995 .

[18]  W. Olson,et al.  Computer simulation of protein-induced structural changes in closed circular DNA. , 1994, Journal of molecular biology.

[19]  D. Goodsell,et al.  Bending and curvature calculations in B-DNA. , 1994, Nucleic acids research.

[20]  R L Jernigan,et al.  Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA. , 1993, Journal of molecular biology.

[21]  I. Brukner,et al.  Evidence for opposite groove-directed curvature of GGGCCC and AAAAA sequence elements. , 1993, Nucleic acids research.

[22]  W. Olson,et al.  Finite element analysis of DNA supercoiling , 1993 .

[23]  M. Frank-Kamenetskii,et al.  Modeling supercoiled DNA. , 1992, Methods in enzymology.

[24]  A. Palleschi,et al.  Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature. , 1990, Biochemistry.

[25]  D. Eisenberg,et al.  Analysis of membrane and surface protein sequences with the hydrophobic moment plot. , 1984, Journal of molecular biology.

[26]  Hen-Ming Wu,et al.  The locus of sequence-directed and protein-induced DNA bending , 1984, Nature.

[27]  Bruno H. Zimm,et al.  Theory of twisting and bending of chain macromolecules; analysis of the fluorescence depolarization of DNA , 1979 .

[28]  W. Spaans The finite element methods , 1975 .

[29]  J. Schellman,et al.  Flexibility of DNA , 1974, Biopolymers.