Enhanced CRISPR-based DNA demethylation by Casilio-ME-mediated RNA-guided coupling of methylcytosine oxidation and DNA repair pathways
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Christopher D. Heinen | A. Cheng | C. Heinen | Sheng Li | Wojciech Rosikiewicz | Nathaniel Jillette | Abhijit Rath | A. Taghbalout | Menghan Du | Wojciech Rosikiewicz
[1] Noah Jakimo,et al. Minimal PAM specificity of a highly similar SpCas9 ortholog , 2018, Science Advances.
[2] David R. Liu,et al. Evolved Cas9 variants with broad PAM compatibility and high DNA specificity , 2018, Nature.
[3] F. Lyko. The DNA methyltransferase family: a versatile toolkit for epigenetic regulation , 2017, Nature Reviews Genetics.
[4] Nipun Verma,et al. CRISPR/Cas9-Based Engineering of the Epigenome. , 2017, Cell stem cell.
[5] Wei Li,et al. DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A , 2017, Genome Biology.
[6] Yi Zhang,et al. TET-mediated active DNA demethylation: mechanism, function and beyond , 2017, Nature Reviews Genetics.
[7] Geet Duggal,et al. Salmon: fast and bias-aware quantification of transcript expression using dual-phase inference , 2017, Nature Methods.
[8] G. Pan,et al. Gadd45a is a heterochromatin relaxer that enhances iPS cell generation , 2016, EMBO reports.
[9] Yonatan Stelzer,et al. Editing DNA Methylation in the Mammalian Genome , 2016, Cell.
[10] Kenichiro Hata,et al. Targeted DNA demethylation in vivo using dCas9–peptide repeat and scFv–TET1 catalytic domain fusions , 2016, Nature Biotechnology.
[11] David Schuermann,et al. Active DNA demethylation by DNA repair: Facts and uncertainties. , 2016, DNA repair.
[12] Lei Zhang,et al. A CRISPR-based approach for targeted DNA demethylation , 2016, Cell Discovery.
[13] A. Klungland,et al. Biochemical reconstitution of TET1–TDG–BER-dependent active DNA demethylation reveals a highly coordinated mechanism , 2016, Nature Communications.
[14] A. Cheng,et al. Casilio: a versatile CRISPR-Cas9-Pumilio hybrid for gene regulation and genomic labeling , 2016, Cell Research.
[15] C. Niehrs,et al. Neil DNA glycosylases promote substrate turnover by Tdg during DNA demethylation , 2016, Nature Structural &Molecular Biology.
[16] J. Joung,et al. High-fidelity CRISPR-Cas9 variants with undetectable genome-wide off-targets , 2015, Nature.
[17] David A. Scott,et al. Rationally engineered Cas9 nucleases with improved specificity , 2015, Science.
[18] C. Niehrs,et al. GADD45a physically and functionally interacts with TET1 , 2015, Differentiation; research in biological diversity.
[19] F. Tang,et al. Gadd45a promotes DNA demethylation through TDG , 2015, Nucleic acids research.
[20] Max A. Horlbeck,et al. Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation , 2014, Cell.
[21] B. V. D. Zaal,et al. Artificial transcription factor-mediated regulation of gene expression. , 2014 .
[22] H. Leonhardt,et al. TET-mediated oxidation of methylcytosine causes TDG or NEIL glycosylase dependent gene reactivation , 2014, Nucleic acids research.
[23] Thomas Lengauer,et al. BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives , 2014, Nucleic Acids Res..
[24] Huimin Zhao,et al. Modular assembly of designer PUF proteins for specific post-transcriptional regulation of endogenous RNA , 2014, Journal of biological engineering.
[25] Albert Jeltsch,et al. Targeted Methylation of the Epithelial Cell Adhesion Molecule (EpCAM) Promoter to Silence Its Expression in Ovarian Cancer Cells , 2014, PloS one.
[26] E. Lander,et al. Genetic Screens in Human Cells Using the CRISPR-Cas9 System , 2013, Science.
[27] Guo-Liang Xu,et al. Induced DNA demethylation by targeting Ten-Eleven Translocation 2 to the human ICAM-1 promoter , 2013, Nucleic acids research.
[28] Yi Zhang,et al. TET enzymes, TDG and the dynamics of DNA demethylation , 2013, Nature.
[29] Jeffry D. Sander,et al. Targeted DNA Demethylation and Endogenous Gene Activation Using Programmable TALE-TET1 Fusions , 2013, Nature Biotechnology.
[30] Yarden Katz,et al. Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system , 2013, Cell Research.
[31] Eli J. Fine,et al. DNA targeting specificity of RNA-guided Cas9 nucleases , 2013, Nature Biotechnology.
[32] C. Barbas,et al. ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. , 2013, Trends in biotechnology.
[33] J. Keith Joung,et al. High frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells , 2013, Nature Biotechnology.
[34] Yi Zhang,et al. Genome-wide Analysis Reveals TET- and TDG-Dependent 5-Methylcytosine Oxidation Dynamics , 2013, Cell.
[35] Zachary D. Smith,et al. DNA methylation: roles in mammalian development , 2013, Nature Reviews Genetics.
[36] Francine E. Garrett-Bakelman,et al. methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles , 2012, Genome Biology.
[37] Xiaodong Cheng,et al. Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation , 2012, Nucleic acids research.
[38] Sung Gyun Kang,et al. One-Step Sequence- and Ligation-Independent Cloning as a Rapid and Versatile Cloning Method for Functional Genomics Studies , 2012, Applied and Environmental Microbiology.
[39] C. Niehrs,et al. Active DNA demethylation by Gadd45 and DNA repair. , 2012, Trends in cell biology.
[40] Chuan He,et al. Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA , 2012, Nature chemical biology.
[41] Yang Wang,et al. Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA , 2011, Science.
[42] A. Maiti,et al. Thymine DNA Glycosylase Can Rapidly Excise 5-Formylcytosine and 5-Carboxylcytosine , 2011, The Journal of Biological Chemistry.
[43] S. Andrews,et al. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications , 2011, Bioinform..
[44] A. Bradley,et al. A hyperactive piggyBac transposase for mammalian applications , 2011, Proceedings of the National Academy of Sciences.
[45] Michael Q. Zhang,et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications , 2010, Nature Biotechnology.
[46] G. Montoya,et al. Solution Structure of Human Growth Arrest and DNA Damage 45α (Gadd45α) and Its Interactions with Proliferating Cell Nuclear Antigen (PCNA) and Aurora A Kinase* , 2010, The Journal of Biological Chemistry.
[47] D. Biard,et al. NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack. , 2010, Molecular cell.
[48] Peter A. Jones,et al. Rethinking how DNA methylation patterns are maintained , 2009, Nature Reviews Genetics.
[49] David R. Liu,et al. Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1 , 2009, Science.
[50] U. Hoffmann‐Rohrer,et al. TAF12 recruits Gadd45a and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation. , 2009, Molecular cell.
[51] Christof Niehrs,et al. Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation , 2007, Nature.
[52] Thomas Lengauer,et al. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing , 2005, Bioinform..
[53] K. Robertson. DNA methylation and human disease , 2005, Nature Reviews Genetics.
[54] V. Mathura,et al. Identification of a Zinc Finger Domain in the Human NEIL2 (Nei-like-2) Protein* , 2004, Journal of Biological Chemistry.
[55] G. Deng,et al. Methylation of CpG in a small region of the hMLH1 promoter invariably correlates with the absence of gene expression. , 1999, Cancer research.
[56] J. Herman,et al. Incidence and functional consequences of hMLH1 promoter hypermethylation in colorectal carcinoma. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[57] B. J. van der Zaal,et al. Artificial transcription factor-mediated regulation of gene expression. , 2014, Plant science : an international journal of experimental plant biology.
[58] K. Okamura,et al. DNA demethylation in vivo using dCas 9 – peptide repeat and scFv – tet 1 catalytic domain fusions , 2022 .