Flexible Droplet Routing in Active Matrix–Based Digital Microfluidic Biochips

The active matrix (AM)-based architecture offers many advantages over conventional digital electrowetting-on-dielectric (EWOD) microfluidic biochips, such as the capability of handling variable-size droplets, more flexible droplet movement, and precise control over droplet navigation. However, a major challenge in choosing the routing paths is to decide when the droplets are to be reshaped depending on the congestion of the intended path, or split- and route sub droplets,and merging them at their respective destinations. As the number of microelectrodes in AM-EWOD chips is large, the path selection problem becomes further complicated. In this article, we propose a negotiation-guided flow based on routing of subdroplets that obviates the explicit need for deciding when the droplets are to be manipulated, yet fully utilizing the power of droplet reshaping, splitting, and merging them to facilitate their journey. The proposed algorithm reduces routing cost and provides more freedom in deadlock avoidance in the presence of multiple routing tasks by assigning certain congestion penalty for sibling subdroplets and fluidic penalty for heterogeneous droplets. Compared to existing techniques, it reduces latest arrival time by an average of 29% for several benchmark and random test suites. Furthermore, our method is observed to provide 100% routability of nets for all test cases, whereas existing and baseline routers fail to produce feasible solutions in many instances. We also propose a reliable mode droplet routing strategy where the number of unreliable splitting operations can be reduced by paying a small penalty on latest arrival time.

[1]  Philip Brisk,et al.  Path scheduling on digital microfluidic biochips , 2012, DAC Design Automation Conference 2012.

[2]  Dinesh Bhatia,et al.  Interconnect estimation for FPGAs , 2006, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[3]  H. Morgan,et al.  Programmable large area digital microfluidic array with integrated droplet sensing for bioassays. , 2012, Lab on a chip.

[4]  Tsung-Wei Huang,et al.  A Two-Stage Integer Linear Programming-Based Droplet Routing Algorithm for Pin-Constrained Digital Microfluidic Biochips , 2011, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[5]  Antje Heese,et al.  Rapid bioassay to measure early reactive oxygen species production in Arabidopsis leave tissue in response to living Pseudomonas syringae , 2014, Plant Methods.

[6]  Saman Sadeghi,et al.  Accurate dispensing of volatile reagents on demand for chemical reactions in EWOD chips. , 2012, Lab on a chip.

[7]  Fei Su,et al.  Droplet Routing in the Synthesis of Digital Microfluidic Biochips , 2006, Proceedings of the Design Automation & Test in Europe Conference.

[8]  Krishnendu Chakrabarty,et al.  Digital microfluidic biochips: A vision for functional diversity and more than moore , 2010, 2010 IEEE/ACM International Conference on Computer-Aided Design (ICCAD).

[9]  Richard John,et al.  A sensitive, rapid ferricyanide-mediated toxicity bioassay developed using Escherichia coli. , 2010, Talanta.

[10]  Phil Paik,et al.  Rapid droplet mixers for digital microfluidic systems. , 2003, Lab on a chip.

[11]  Philip Brisk,et al.  Fast Online Synthesis of Digital Microfluidic Biochips , 2014, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[12]  Krishnendu Chakrabarty,et al.  Real-Time Error Recovery in Cyberphysical Digital-Microfluidic Biochips Using a Compact Dictionary , 2013, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[13]  Fei Su,et al.  Unified high-level synthesis and module placement for defect-tolerant microfluidic biochips , 2005, Proceedings. 42nd Design Automation Conference, 2005..

[14]  Ying-Han Chen,et al.  A Reliability-Oriented Placement Algorithm for Reconfigurable Digital Microfluidic Biochips Using 3-D Deferred Decision Making Technique , 2013, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[15]  Tsung-Wei Huang,et al.  A two-stage ILP-based droplet routing algorithm for pin-constrained digital microfluidic biochips , 2010, ISPD '10.

[16]  Paul Pop,et al.  Operation placement for application-specific digital microfluidic biochips , 2013, 2013 Symposium on Design, Test, Integration and Packaging of MEMS/MOEMS (DTIP).

[17]  Fei Su,et al.  High-level synthesis of digital microfluidic biochips , 2008, JETC.

[18]  Zhongkai Chen,et al.  Droplet routing in high-level synthesis of configurable digital microfluidic biochips based on microelectrode dot array architecture , 2011 .

[19]  Ian Papautsky,et al.  Programmable Electrowetting with Channels and Droplets , 2015, Micromachines.

[20]  David Z. Pan,et al.  A High-Performance Droplet Routing Algorithm for Digital Microfluidic Biochips , 2008, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[21]  Maren S Fragala,et al.  Conceptual and methodological issues relevant to cytokine and inflammatory marker measurements in clinical research , 2010, Current opinion in clinical nutrition and metabolic care.

[22]  Brenda Deyarmin,et al.  Laser microdissection for gene expression profiling. , 2011, Methods in molecular biology.

[23]  Jun-ichi Yoshida,et al.  Flash Chemistry: Fast Organic Synthesis in Microsystems , 2008 .

[24]  Tsung-Wei Huang,et al.  A fast routability- and performance-driven droplet routing algorithm for digital microfluidic biochips , 2009, 2009 IEEE International Conference on Computer Design.

[25]  I. Pappas,et al.  Active-Matrix Liquid Crystal Displays - Operation, Electronics and Analog Circuits Design , 2009 .

[26]  Yao-Wen Chang,et al.  BioRoute: A Network-Flow-Based Routing Algorithm for the Synthesis of Digital Microfluidic Biochips , 2008, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[27]  Fei Su,et al.  Microfluidics-Based Biochips: Technology Issues, Implementation Platforms, and Design-Automation Challenges , 2006, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[28]  Krishnendu Chakrabarty,et al.  Dictionary-based error recovery in cyberphysical digital-microfluidic biochips , 2012, 2012 IEEE/ACM International Conference on Computer-Aided Design (ICCAD).

[29]  Yici Cai,et al.  Practical functional and washing droplet routing for cross-contamination avoidance in digital microfluidic biochips , 2014, 2014 51st ACM/EDAC/IEEE Design Automation Conference (DAC).

[30]  S. Fan,et al.  Digital microfluidic operations on micro-electrode array architecture , 2011, NEMS 2011.