The energy landscape underpinning module dynamics in the human brain connectome

&NA; Human brain dynamics can be viewed through the lens of statistical mechanics, where neurophysiological activity evolves around and between local attractors representing mental states. Many physically‐inspired models of these dynamics define brain states based on instantaneous measurements of regional activity. Yet, recent work in network neuroscience has provided evidence that the brain might also be well‐characterized by time‐varying states composed of locally coherent activity or functional modules. We study this network‐based notion of brain state to understand how functional modules dynamically interact with one another to perform cognitive functions. We estimate the functional relationships between regions of interest (ROIs) by fitting a pair‐wise maximum entropy model to each ROI's pattern of allegiance to functional modules. This process uses an information theoretic notion of energy (as opposed to a metabolic one) to produce an energy landscape in which local minima represent attractor states characterized by specific patterns of modular structure. The clustering of local minima highlights three classes of ROIs with similar patterns of allegiance to community states. Visual, attention, sensorimotor, and subcortical ROIs are well‐characterized by a single functional community. The remaining ROIs affiliate with a putative executive control community or a putative default mode and salience community. We simulate the brain's dynamic transitions between these community states using a random walk process. We observe that simulated transition probabilities between basins are statistically consistent with empirically observed transitions in resting state fMRI data. These results offer a view of the brain as a dynamical system that transitions between basins of attraction characterized by coherent activity in groups of brain regions, and that the strength of these attractors depends on the ongoing cognitive computations. HighlightsThe brain is characterized by time‐varying states composed of functional modules.Functional modules dynamically interact with one another to perform cognitive functions.We pose a generative model of these dynamics based on pair‐wise maximum entropy.Simulated state transitions resemble those observed in resting state fMRI data.Our results suggest that module dynamics depend on ongoing cognitive computations.

[1]  D. Bassett,et al.  Dynamic reconfiguration of frontal brain networks during executive cognition in humans , 2015, Proceedings of the National Academy of Sciences.

[2]  Jukka-Pekka Onnela,et al.  Community Structure in Time-Dependent, Multiscale, and Multiplex Networks , 2009, Science.

[3]  Aslak Grinsted,et al.  Nonlinear Processes in Geophysics Application of the Cross Wavelet Transform and Wavelet Coherence to Geophysical Time Series , 2022 .

[4]  Karl J. Friston,et al.  Movement‐Related effects in fMRI time‐series , 1996, Magnetic resonance in medicine.

[5]  E. Jaynes Information Theory and Statistical Mechanics , 1957 .

[6]  David A. Leopold,et al.  Dynamic functional connectivity: Promise, issues, and interpretations , 2013, NeuroImage.

[7]  M. Greicius,et al.  Decoding subject-driven cognitive states with whole-brain connectivity patterns. , 2012, Cerebral cortex.

[8]  N. Metropolis,et al.  Equation of State Calculations by Fast Computing Machines , 1953, Resonance.

[9]  Mason A. Porter,et al.  Robust Detection of Dynamic Community Structure in Networks , 2012, Chaos.

[10]  Danielle S Bassett,et al.  Dynamic Flexibility in Striatal-Cortical Circuits Supports Reinforcement Learning , 2017, The Journal of Neuroscience.

[11]  Danielle S Bassett,et al.  Detection of functional brain network reconfiguration during task-driven cognitive states , 2016, NeuroImage.

[12]  Geraint Rees,et al.  Energy landscape and dynamics of brain activity during human bistable perception , 2014, Nature Communications.

[13]  D. Bassett,et al.  Recurring Functional Interactions Predict Network Architecture of Interictal and Ictal States in Neocortical Epilepsy , 2016, eNeuro.

[14]  Vesa Kiviniemi,et al.  A Sliding Time-Window ICA Reveals Spatial Variability of the Default Mode Network in Time , 2011, Brain Connect..

[15]  Timothy O. Laumann,et al.  Evaluation of Denoising Strategies to Address Motion-Correlated Artifacts in Resting-State Functional Magnetic Resonance Imaging Data from the Human Connectome Project , 2016, Brain Connect..

[16]  R. Segev,et al.  Sparse low-order interaction network underlies a highly correlated and learnable neural population code , 2011, Proceedings of the National Academy of Sciences.

[17]  Ralph P. Grimaldi,et al.  Discrete and combinatorial mathematics , 1985 .

[18]  J. Pekar,et al.  A method for making group inferences from functional MRI data using independent component analysis , 2001, Human brain mapping.

[19]  J. Mattingley,et al.  Dynamic cooperation and competition between brain systems during cognitive control , 2013, Trends in Cognitive Sciences.

[20]  Danielle S Bassett,et al.  Learning-induced autonomy of sensorimotor systems , 2014, Nature Neuroscience.

[21]  Michael J. Berry,et al.  Weak pairwise correlations imply strongly correlated network states in a neural population , 2005, Nature.

[22]  Leonardo L. Gollo,et al.  Time-resolved resting-state brain networks , 2014, Proceedings of the National Academy of Sciences.

[23]  Lena S. Geiger,et al.  Dynamic brain network reconfiguration as a potential schizophrenia genetic risk mechanism modulated by NMDA receptor function , 2016, Proceedings of the National Academy of Sciences.

[24]  Shella D. Keilholz,et al.  Dynamic Properties of Functional Connectivity in the Rodent , 2013, Brain Connect..

[25]  Timothy O. Laumann,et al.  Functional Network Organization of the Human Brain , 2011, Neuron.

[26]  Dimitri Van De Ville,et al.  BOLD correlates of EEG topography reveal rapid resting-state network dynamics , 2010, NeuroImage.

[27]  Qing Zhou Random walk over basins of attraction to construct ising energy landscapes. , 2011, Physical review letters.

[28]  Jonathon Shlens,et al.  The Structure of Multi-Neuron Firing Patterns in Primate Retina , 2006, The Journal of Neuroscience.

[29]  Jean M. Vettel,et al.  Controllability of structural brain networks , 2014, Nature Communications.

[30]  Evan M. Gordon,et al.  On the Stability of BOLD fMRI Correlations , 2016, Cerebral cortex.

[31]  Thomas T. Liu,et al.  A component based noise correction method (CompCor) for BOLD and perfusion based fMRI , 2007, NeuroImage.

[32]  Vasily A. Vakorin,et al.  Variability of Brain Signals Processed Locally Transforms into Higher Connectivity with Brain Development , 2011, Journal of Neuroscience.

[33]  Gustavo Deco,et al.  Using the Virtual Brain to Reveal the Role of Oscillations and Plasticity in Shaping Brain's Dynamical Landscape , 2014, Brain Connect..

[34]  Gustavo Deco,et al.  Can sliding-window correlations reveal dynamic functional connectivity in resting-state fMRI? , 2016, NeuroImage.

[35]  Edward T. Bullmore,et al.  Neuroinformatics Original Research Article , 2022 .

[36]  Mason A. Porter,et al.  Task-Based Core-Periphery Organization of Human Brain Dynamics , 2012, PLoS Comput. Biol..

[37]  Naoki Masuda,et al.  A pairwise maximum entropy model accurately describes resting-state human brain networks , 2013, Nature Communications.

[38]  Stephen M. Smith,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[39]  Stephen M Smith,et al.  Fast robust automated brain extraction , 2002, Human brain mapping.

[40]  J. Cummings,et al.  Executive control function: a review of its promise and challenges for clinical research. A report from the Committee on Research of the American Neuropsychiatric Association. , 2002, The Journal of neuropsychiatry and clinical neurosciences.

[41]  Hollis G. Potter,et al.  Author Manuscript , 2013 .

[42]  Hao He,et al.  Assessing dynamic brain graphs of time-varying connectivity in fMRI data: Application to healthy controls and patients with schizophrenia , 2015, NeuroImage.

[43]  Hang Joon Jo,et al.  Trouble at Rest: How Correlation Patterns and Group Differences Become Distorted After Global Signal Regression , 2012, Brain Connect..

[44]  Fabio Pasqualetti,et al.  Optimal trajectories of brain state transitions , 2016, NeuroImage.

[45]  Klaas E. Stephan,et al.  A short history of causal modeling of fMRI data , 2012, NeuroImage.

[46]  N. Crone,et al.  Network dynamics of the brain and influence of the epileptic seizure onset zone , 2014, Proceedings of the National Academy of Sciences.

[47]  Stefano Panzeri,et al.  The Upward Bias in Measures of Information Derived from Limited Data Samples , 1995, Neural Computation.

[48]  Marisa O. Hollinshead,et al.  The organization of the human cerebral cortex estimated by intrinsic functional connectivity. , 2011, Journal of neurophysiology.

[49]  Thomas Lukasiewicz MAXIMUM ENTROPY , 2000 .

[50]  Scott T. Grafton,et al.  Dynamic reconfiguration of human brain networks during learning , 2010, Proceedings of the National Academy of Sciences.

[51]  Michael Brady,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[52]  Danielle S. Bassett,et al.  Evolution of brain network dynamics in neurodevelopment , 2017, Network Neuroscience.

[53]  Michael J. Hove,et al.  Dynamic Brain Network Correlates of Spontaneous Fluctuations in Attention , 2016, Cerebral cortex.

[54]  Peter E. Latham,et al.  How biased are maximum entropy models? , 2011, NIPS.

[55]  Danielle S Bassett,et al.  Dynamic network structure of interhemispheric coordination , 2012, Proceedings of the National Academy of Sciences.

[56]  Santo Fortunato,et al.  Limits of modularity maximization in community detection , 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.

[57]  Richard F. Betzel,et al.  Modular Brain Networks. , 2016, Annual review of psychology.

[58]  Richard Coppola,et al.  Intra- and Inter-Frequency Brain Network Structure in Health and Schizophrenia , 2012, PloS one.

[59]  R. N. Spreng,et al.  The default network and self‐generated thought: component processes, dynamic control, and clinical relevance , 2014, Annals of the New York Academy of Sciences.

[60]  O. Witte,et al.  Functional Mapping of the Human Brain , 2000 .

[61]  Jonathan D. Power,et al.  Multi-task connectivity reveals flexible hubs for adaptive task control , 2013, Nature Neuroscience.

[62]  Jessica A. Turner,et al.  Behavioral Interpretations of Intrinsic Connectivity Networks , 2011, Journal of Cognitive Neuroscience.

[63]  Danielle S. Bassett,et al.  Dynamic flexibility in striatal-cortical circuits supports reinforcement learning , 2016 .

[64]  N. Logothetis What we can do and what we cannot do with fMRI , 2008, Nature.

[65]  Jonathan D. Power,et al.  Intrinsic and Task-Evoked Network Architectures of the Human Brain , 2014, Neuron.

[66]  Daniel A. Handwerker,et al.  Periodic changes in fMRI connectivity , 2012, NeuroImage.

[67]  Vince D. Calhoun,et al.  Dynamic changes of spatial functional network connectivity in healthy individuals and schizophrenia patients using independent vector analysis , 2014, NeuroImage.

[68]  Danielle S. Bassett,et al.  A positive mood, a flexible brain , 2016 .

[69]  Dost Öngür,et al.  Anticorrelations in resting state networks without global signal regression , 2012, NeuroImage.

[70]  M E J Newman,et al.  Modularity and community structure in networks. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[71]  Sharon L. Thompson-Schill,et al.  A Functional Cartography of Cognitive Systems , 2015, PLoS Comput. Biol..

[72]  B. T. Thomas Yeo,et al.  Interpreting temporal fluctuations in resting-state functional connectivity MRI , 2017, NeuroImage.

[73]  M E J Newman,et al.  Community structure in social and biological networks , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[74]  N. Turk-Browne Functional Interactions as Big Data in the Human Brain , 2013, Science.

[75]  Patric Hagmann,et al.  Mapping the human connectome at multiple scales with diffusion spectrum MRI , 2012, Journal of Neuroscience Methods.

[76]  Hang Joon Jo,et al.  Mapping sources of correlation in resting state FMRI, with artifact detection and removal , 2010, NeuroImage.

[77]  Naoki Masuda,et al.  Network-dependent modulation of brain activity during sleep , 2014, NeuroImage.

[78]  Jean-Loup Guillaume,et al.  Fast unfolding of communities in large networks , 2008, 0803.0476.

[79]  J. Cummings,et al.  Executive Control Function , 2002 .

[80]  Timothy O. Laumann,et al.  Interpreting Temporal Fluctuations in Resting-State Functional Connectivity MRI , 2017 .

[81]  Kevin Murphy,et al.  The impact of global signal regression on resting state correlations: Are anti-correlated networks introduced? , 2009, NeuroImage.

[82]  Xiaoqian J Chai,et al.  Intrinsic Functional Connectivity in the Adult Brain and Success in Second-Language Learning , 2016, The Journal of Neuroscience.

[83]  Brian Litt,et al.  Dynamic Network Drivers of Seizure Generation, Propagation and Termination in Human Neocortical Epilepsy , 2014, PLoS Comput. Biol..

[84]  V. Calhoun,et al.  Interaction among subsystems within default mode network diminished in schizophrenia patients: A dynamic connectivity approach , 2016, Schizophrenia Research.

[85]  Á. Pascual-Leone,et al.  Microstates in resting-state EEG: Current status and future directions , 2015, Neuroscience & Biobehavioral Reviews.

[86]  Benjamin H. Good,et al.  Performance of modularity maximization in practical contexts. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

[87]  W. K. Hastings,et al.  Monte Carlo Sampling Methods Using Markov Chains and Their Applications , 1970 .

[88]  V. Menon,et al.  Saliency, switching, attention and control: a network model of insula function , 2010, Brain Structure and Function.

[89]  Kent A. Kiehl,et al.  A method for evaluating dynamic functional network connectivity and task-modulation: application to schizophrenia , 2010, Magnetic Resonance Materials in Physics, Biology and Medicine.

[90]  Naoki Masuda,et al.  Energy landscapes of resting-state brain networks , 2014, Front. Neuroinform..

[91]  Catie Chang,et al.  Time–frequency dynamics of resting-state brain connectivity measured with fMRI , 2010, NeuroImage.

[92]  E. Bullmore,et al.  Undirected graphs of frequency-dependent functional connectivity in whole brain networks , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.

[93]  S. Thompson-Schill,et al.  Reworking the language network , 2014, Trends in Cognitive Sciences.

[94]  Olaf Sporns,et al.  Functional brain modules reconfigure at multiple scales across the human lifespan , 2015, 1510.08045.

[95]  Lucina Q. Uddin,et al.  Demystifying cognitive flexibility: Implications for clinical and developmental neuroscience , 2015, Trends in Neurosciences.

[96]  Mason A. Porter,et al.  Communities in Networks , 2009, ArXiv.

[97]  Santo Fortunato,et al.  Community detection in graphs , 2009, ArXiv.

[98]  John M. Beggs,et al.  A Maximum Entropy Model Applied to Spatial and Temporal Correlations from Cortical Networks In Vitro , 2008, The Journal of Neuroscience.

[99]  Eswar Damaraju,et al.  Tracking whole-brain connectivity dynamics in the resting state. , 2014, Cerebral cortex.