Structure-Based Design of 3-(4-Aryl-1H-1,2,3-triazol-1-yl)-Biphenyl Derivatives as P2Y14 Receptor Antagonists

UDP and UDP-glucose activate the P2Y14 receptor (P2Y14R) to modulate processes related to inflammation, diabetes, and asthma. A computational pipeline suggested alternatives to naphthalene of a previously reported P2Y14R antagonist (3, PPTN) using docking and molecular dynamics simulations on a hP2Y14R homology model based on P2Y12R structures. By reevaluating the binding of 3 to P2Y14R computationally, two alternatives, i.e., alkynyl and triazolyl derivatives, were identified. Improved synthesis of fluorescent antagonist 4 enabled affinity quantification (IC50s, nM) using flow cytometry of P2Y14R-expressing CHO cells. p-F3C-phenyl-triazole 65 (32) was more potent than a corresponding alkyne 11. Thus, additional triazolyl derivatives were prepared, as guided by docking simulations, with nonpolar aryl substituents favored. Although triazoles were less potent than 3 (6), simpler synthesis facilitated further structural optimization. Additionally, relative P2Y14R affinities agreed with predicted binding of alkynyl and triazole analogues. These triazoles, designed through a structure-based approach, can be assessed in disease models.

[1]  Kyle A. Brown,et al.  Design, synthesis, pharmacological characterization of a fluorescent agonist of the P2Y₁₄ receptor. , 2015, Bioorganic & medicinal chemistry letters.

[2]  K. Jacobson,et al.  Molecular modeling of the human P2Y14 receptor: A template for structure-based design of selective agonist ligands. , 2015, Bioorganic & medicinal chemistry.

[3]  E. Lazarowski,et al.  UDP-Sugars as Extracellular Signaling Molecules: Cellular and Physiologic Consequences of P2Y14 Receptor Activation , 2015, Molecular Pharmacology.

[4]  Douglas E. V. Pires,et al.  pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures , 2015, Journal of medicinal chemistry.

[5]  Silvia Paoletta,et al.  Structure-Based Design, Synthesis by Click Chemistry and in Vivo Activity of Highly Selective A3 Adenosine Receptor Agonists. , 2015, MedChemComm.

[6]  K. Jacobson,et al.  Renal Intercalated Cells Sense and Mediate Inflammation via the P2Y14 Receptor , 2015, PloS one.

[7]  Kyle A. Brown,et al.  Exploring a 2-Naphthoic Acid Template for the Structure-Based Design of P2Y14 Receptor Antagonist Molecular Probes , 2014, ACS chemical biology.

[8]  M. Bradley,et al.  Separating the isomers—Efficient synthesis of the N-hydroxysuccinimide esters of 5 and 6-carboxyfluorescein diacetate and 5 and 6-carboxyrhodamine B , 2014, Bioorganic & medicinal chemistry letters.

[9]  T. Schöneberg,et al.  The G Protein-coupled Receptor P2Y14 Influences Insulin Release and Smooth Muscle Function in Mice* , 2014, The Journal of Biological Chemistry.

[10]  Mingyao Liu,et al.  Structure of the human P2Y12 receptor in complex with an antithrombotic drug , 2014, Science China Life Sciences.

[11]  Hualiang Jiang,et al.  Agonist-bound structure of the human P2Y12 receptor , 2014, Nature.

[12]  Steven M. Moss,et al.  Structure of the human P2Y12 receptor in complex with an antithrombotic drug , 2014, Nature.

[13]  P. Postnikov,et al.  A simple and effective synthesis of aryl azides via arenediazonium tosylates , 2013 .

[14]  K. Jacobson,et al.  A Selective High-Affinity Antagonist of the P2Y14 Receptor Inhibits UDP-Glucose–Stimulated Chemotaxis of Human Neutrophils , 2013, Molecular Pharmacology.

[15]  Maria F. Sassano,et al.  Automated design of ligands to polypharmacological profiles , 2012, Nature.

[16]  Alexander D. MacKerell,et al.  Automation of the CHARMM General Force Field (CGenFF) I: Bond Perception and Atom Typing , 2012, J. Chem. Inf. Model..

[17]  Alexander D. MacKerell,et al.  Automation of the CHARMM General Force Field (CGenFF) II: Assignment of Bonded Parameters and Partial Atomic Charges , 2012, J. Chem. Inf. Model..

[18]  H. Yamanaka,et al.  Multiple P2Y subtypes in spinal microglia are involved in neuropathic pain after peripheral nerve injury , 2012, Glia.

[19]  Alexander D. MacKerell,et al.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles. , 2012, Journal of chemical theory and computation.

[20]  T. K. Harden,et al.  The UDP-sugar-sensing P2Y(14) receptor promotes Rho-mediated signaling and chemotaxis in human neutrophils. , 2012, American journal of physiology. Cell physiology.

[21]  S. O’Grady Purinergic signaling and immune cell chemotaxis. Focus on "the UDP-sugar-sensing P2Y14 receptor promotes Rho-mediated signaling and chemotaxis in human neutrophils". , 2012, American journal of physiology. Cell physiology.

[22]  J. Olefsky,et al.  GPR105 Ablation Prevents Inflammation and Improves Insulin Sensitivity in Mice with Diet-Induced Obesity , 2012, The Journal of Immunology.

[23]  A. Suzuki Cross-coupling reactions of organoboranes: an easy way to construct C-C bonds (Nobel Lecture). , 2011, Angewandte Chemie.

[24]  Yongxin Han,et al.  Applying the pro-drug approach to afford highly bioavailable antagonists of P2Y(14). , 2011, Bioorganic & medicinal chemistry letters.

[25]  J. Gauthier,et al.  The identification of 4,7-disubstituted naphthoic acid derivatives as UDP-competitive antagonists of P2Y14. , 2011, Bioorganic & medicinal chemistry letters.

[26]  R. Gordon,et al.  Synthesis and SAR of pyrimidine-based, non-nucleotide P2Y14 receptor antagonists. , 2011, Bioorganic & medicinal chemistry letters.

[27]  T. K. Harden,et al.  Signalling and pharmacological properties of the P2Y14 receptor , 2010, Acta physiologica.

[28]  S. Hell,et al.  New fluorinated rhodamines for optical microscopy and nanoscopy. , 2010, Chemistry.

[29]  K. Jacobson,et al.  UDP‐glucose acting at P2Y14 receptors is a mediator of mast cell degranulation , 2010, Biochemical pharmacology.

[30]  Alexander D. MacKerell,et al.  CHARMM general force field: A force field for drug‐like molecules compatible with the CHARMM all‐atom additive biological force fields , 2009, J. Comput. Chem..

[31]  C. Nájera,et al.  The Sonogashira reaction: a booming methodology in synthetic organic chemistry. , 2007, Chemical reviews.

[32]  Matthew P. Repasky,et al.  Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes. , 2006, Journal of medicinal chemistry.

[33]  Andrei L. Lomize,et al.  OPM: Orientations of Proteins in Membranes database , 2006, Bioinform..

[34]  Laxmikant V. Kalé,et al.  Scalable molecular dynamics with NAMD , 2005, J. Comput. Chem..

[35]  Richard A. Friesner,et al.  Integrated Modeling Program, Applied Chemical Theory (IMPACT) , 2005, J. Comput. Chem..

[36]  F. Himo,et al.  Copper(I)-catalyzed synthesis of azoles. DFT study predicts unprecedented reactivity and intermediates. , 2004, Journal of the American Chemical Society.

[37]  M. G. Finn,et al.  Click Chemistry: Diverse Chemical Function from a Few Good Reactions. , 2001, Angewandte Chemie.

[38]  N. Miyaura,et al.  Palladium(0)-Catalyzed Cross-Coupling Reaction of Alkoxydiboron with Haloarenes: A Direct Procedure for Arylboronic Esters , 1995 .

[39]  G. Ciccotti,et al.  Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes , 1977 .

[40]  Y. Cheng,et al.  Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction. , 1973, Biochemical pharmacology.

[41]  Kyle A. Brown,et al.  Design, Synthesis and Pharmacological Characterization of a Fluorescent Agonist of the P2Y 14 Receptor , 2015 .

[42]  S. Koizumi,et al.  Secretion of Matrix Metalloproteinase-9 from Astrocytes by Inhibition of Tonic P2Y14-Receptor-Mediated Signal(s) , 2012, Cellular and Molecular Neurobiology.

[43]  T. Sumida,et al.  Acceptor-suppressor T cell hybridoma with a receptor recognizing antigen-specific suppressor factor , 1983, The Journal of experimental medicine.

[44]  J. Ballesteros,et al.  [19] Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein-coupled receptors , 1995 .