Review of automatic pulmonary lobe segmentation methods from CT

The computational detection of pulmonary lobes from CT images is a challenging segmentation problem with important respiratory health care applications, including surgical planning and regional image analysis. Several authors have proposed automated algorithms and we present a methodological review. These algorithms share a number of common stages and we consider each stage in turn, comparing the methods applied by each author and discussing their relative strengths. No standard method has yet emerged and none of the published methods have been demonstrated across a full range of clinical pathologies and imaging protocols. We discuss how improved methods could be developed by combining different approaches, and we use this to propose a workflow for the development of new algorithms.

[1]  Qiao Wei,et al.  Segmentation of Lung Lobes in High-Resolution Isotropic CT Images , 2009, IEEE Transactions on Biomedical Engineering.

[2]  David Gur,et al.  A Computational Geometry Approach to Automated Pulmonary Fissure Segmentation in CT Examinations , 2009, IEEE Transactions on Medical Imaging.

[3]  Eric A. Hoffman,et al.  Atlas-driven lung lobe segmentation in volumetric X-ray CT images , 2006, IEEE Transactions on Medical Imaging.

[4]  Geoffrey D. Rubin,et al.  Adaptive border marching algorithm: Automatic lung segmentation on chest CT images , 2008, Comput. Medical Imaging Graph..

[5]  Joseph M. Reinhardt,et al.  Anatomy-Guided Lung Lobe Segmentation in X-Ray CT Images , 2009, IEEE Transactions on Medical Imaging.

[6]  Suicheng Gu,et al.  Robust pulmonary lobe segmentation against incomplete fissures , 2012, Medical Imaging.

[7]  Smita Patel,et al.  Normal and accessory fissures of the lung: evaluation with contiguous volumetric thin-section multidetector CT. , 2010, European journal of radiology.

[8]  Heinz-Otto Peitgen,et al.  Automatic segmentation of lung lobes in ct images based on fissures, vessels, and bronchi , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[9]  William E. Higgins,et al.  Robust 3-D Airway Tree Segmentation for Image-Guided Peripheral Bronchoscopy , 2010, IEEE Transactions on Medical Imaging.

[10]  Bram van Ginneken,et al.  Robust Segmentation and Anatomical Labeling of the Airway Tree from Thoracic CT Scans , 2008, MICCAI.

[11]  Milan Sonka,et al.  Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images , 2009, Int. J. Biomed. Imaging.

[12]  D Rees,et al.  Silica, silicosis and tuberculosis. , 2007, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[13]  Thomas Bülow,et al.  Unsupervised extraction of the pulmonary interlobar fissures from high resolution thoracic CT data , 2005 .

[14]  Marleen de Bruijne,et al.  Airway Tree Extraction with Locally Optimal Paths , 2009, MICCAI.

[15]  Milan Sonka,et al.  Segmentation and quantitative analysis of intrathoracic airway trees from computed tomography images. , 2005, Proceedings of the American Thoracic Society.

[16]  Bram van Ginneken,et al.  Automatic Segmentation of Pulmonary Segments From Volumetric Chest CT Scans , 2009, IEEE Transactions on Medical Imaging.

[17]  Neil Woodhouse,et al.  An image acquisition and registration strategy for the fusion of hyperpolarized helium-3 MRI and x-ray CT images of the lung , 2008, Physics in medicine and biology.

[18]  Eric A. Hoffman,et al.  Automatic lung segmentation for accurate quantitation of volumetric X-ray CT images , 2001, IEEE Transactions on Medical Imaging.

[19]  John B. West,et al.  Respiratory Physiology - the Essentials , 1979 .

[20]  Joan Serrat,et al.  Multilocal Creaseness Based on the Level-Set Extrinsic Curvature , 2000, Comput. Vis. Image Underst..

[21]  Michael F. McNitt-Gray,et al.  Method for segmenting chest CT image data using an anatomical model: preliminary results , 1997, IEEE Transactions on Medical Imaging.

[22]  Anna Fabijanska,et al.  Two-pass region growing algorithm for segmenting airway tree from MDCT chest scans , 2009, Comput. Medical Imaging Graph..

[23]  Michael F. McNitt-Gray,et al.  Automated classification of lung bronchovascular anatomy in CT using AdaBoost , 2007, Medical Image Anal..

[24]  Eric A. Hoffman,et al.  Extraction of Airways From CT (EXACT'09) , 2012, IEEE Transactions on Medical Imaging.

[25]  Steven Piantadosi,et al.  A randomized trial comparing lung-volume-reduction surgery with medical therapy for severe emphysema. , 2003, The New England journal of medicine.

[26]  Georgy L. Gimel'farb,et al.  A New Stochastic Framework for Accurate Lung Segmentation , 2008, MICCAI.

[27]  Tatjana Zrimec,et al.  Bronchopulmonary segments approximation using anatomical atlas , 2007, SPIE Medical Imaging.

[28]  Fernando Barata,et al.  [Anatomy for the bronchologist: a prospective study of the normal endobronchial anatomic variants]. , 2011 .

[29]  Cristian Lorenz,et al.  Lung lobe modeling and segmentation with individualized surface meshes , 2008, SPIE Medical Imaging.

[30]  Yutaka Hata,et al.  Tubular tissue-based segmentation of lung lobes from chest MDCT images , 2003, IEEE EMBS Asian-Pacific Conference on Biomedical Engineering, 2003..

[31]  David Gur,et al.  A Differential Geometric Approach to Automated Segmentation of Human Airway Tree , 2011, IEEE Transactions on Medical Imaging.

[32]  D. Aykac,et al.  Segmentation and analysis of the human airway tree from three-dimensional X-ray CT images , 2003, IEEE Transactions on Medical Imaging.

[33]  Carl-Fredrik Westin,et al.  Automatic Lung Lobe Segmentation Using Particles, Thin Plate Splines, and Maximum a Posteriori Estimation , 2010, MICCAI.

[34]  David Gur,et al.  Pulmonary Lobe Segmentation in CT Examinations Using Implicit Surface Fitting , 2009, IEEE Transactions on Medical Imaging.

[35]  Bram van Ginneken,et al.  Computer analysis of computed tomography scans of the lung: a survey , 2006, IEEE Transactions on Medical Imaging.

[36]  Huichuan Duan,et al.  3D computerized segmentation of lung volume with computed tomography. , 2006, Academic radiology.

[37]  Noboru Niki,et al.  An algorithm for the extraction of pulmonary fissures from low-dose multislice CT image , 2006 .

[38]  Michael P. Hlastala,et al.  Physiology of respiration , 1996 .

[39]  S. Lam,et al.  New and current clinical imaging techniques to study chronic obstructive pulmonary disease. , 2009, American journal of respiratory and critical care medicine.

[40]  Bram van Ginneken,et al.  Toward automated segmentation of the pathological lung in CT , 2005, IEEE Transactions on Medical Imaging.

[41]  Noboru Niki,et al.  Automatic extraction of pulmonary fissures from multidetector-row CT images , 2001, Proceedings 2001 International Conference on Image Processing (Cat. No.01CH37205).

[42]  Dirk Bartz,et al.  Hybrid segmentation and virtual bronchoscopy based on CT images. , 2004, Academic radiology.

[43]  Yong Xia,et al.  Airway segmentation for low-contrast CT images from combined PET/CT scanners based on airway modelling and seed prediction , 2009 .

[44]  Raúl San José Estépar,et al.  Airway count and emphysema assessed by chest CT imaging predicts clinical outcome in smokers. , 2010, Chest.

[45]  Cristian Lorenz,et al.  Investigation of four-dimensional computed tomography-based pulmonary ventilation imaging in patients with emphysematous lung regions , 2011, Physics in medicine and biology.

[46]  Kensaku Mori,et al.  Recognition of bronchus in three-dimensional X-ray CT images with applications to virtualized bronchoscopy system , 1996, Proceedings of 13th International Conference on Pattern Recognition.

[47]  Takayuki Kitasaka,et al.  Recognition of lung lobes and its application to the bronchial structure analysis , 2006, 18th International Conference on Pattern Recognition (ICPR'06).

[48]  Noboru Niki,et al.  Extraction of pulmonary fissures from thin-section CT images using calculation of surface-curvatures and morphology filters , 2000, Proceedings 2000 International Conference on Image Processing (Cat. No.00CH37101).

[49]  S. Armato,et al.  Automated lung segmentation for thoracic CT impact on computer-aided diagnosis. , 2004, Academic radiology.

[50]  Geoffrey McLennan,et al.  Three-dimensional human airway segmentation methods for clinical virtual bronchoscopy. , 2002, Academic radiology.

[51]  Fernando Barata,et al.  Anatomia endobrônquica: estudo prospectivo das variações anatómicas da árvore traqueobrônquica , 2011 .

[52]  S Meenakshi,et al.  Morphological variations of the lung fissures and lobes. , 2004, The Indian journal of chest diseases & allied sciences.

[53]  Milan Sonka,et al.  Matching and anatomical labeling of human airway tree , 2005, IEEE Transactions on Medical Imaging.

[54]  Horst Bischof,et al.  Airway Tree Reconstruction Based on Tube Detection , 2009, MICCAI 2009.

[55]  H. Peitgen,et al.  Informatics in radiology (infoRAD): new tools for computer assistance in thoracic CT. Part 1. Functional analysis of lungs, lung lobes, and bronchopulmonary segments. , 2005, Radiographics : a review publication of the Radiological Society of North America, Inc.

[56]  Takayuki Kitasaka,et al.  Lung lobe segmentation based on statistical atlas and graph cuts , 2012, Medical Imaging.

[57]  Paul J. Friedman,et al.  American Thoracic Society/European Respiratory Society International Multidisciplinary Consensus Classification of the Idiopathic Interstitial Pneumonias. This joint statement of the American Thoracic Society (ATS), and the European Respiratory Society (ERS) was adopted by the ATS board of directors , 2002, American journal of respiratory and critical care medicine.

[58]  Lin-Yu Tseng,et al.  Automatic fissure detection in CT images based on the genetic algorithm , 2010, 2010 International Conference on Machine Learning and Cybernetics.

[59]  Kensaku Mori,et al.  Automated anatomical labeling of the bronchial branch and its application to the virtual bronchoscopy system , 2000, IEEE Transactions on Medical Imaging.

[60]  Max A. Viergever,et al.  Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures , 2010, IEEE Transactions on Medical Imaging.

[61]  H. Coxson,et al.  Computed tomography and monitoring of emphysema , 2007, European Respiratory Journal.

[62]  A. Leung Pulmonary tuberculosis: the essentials. , 1999, Radiology.

[63]  Luc Vincent,et al.  Watersheds in Digital Spaces: An Efficient Algorithm Based on Immersion Simulations , 1991, IEEE Trans. Pattern Anal. Mach. Intell..

[64]  Dimitris N. Metaxas,et al.  Entangled Decision Forests and Their Application for Semantic Segmentation of CT Images , 2011, IPMI.

[65]  Heinz Handels,et al.  Pulmonary lobe segmentation with level sets , 2012, Medical Imaging.

[66]  Fereidoun Abtin,et al.  Automatic segmentation of lung parenchyma in the presence of diseases based on curvature of ribs. , 2008, Academic radiology.

[67]  David Gavaghan,et al.  Pulmonary lobe segmentation from CT images using fissureness, airways, vessels and multilevel B-splines , 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

[68]  B. van Ginneken,et al.  Automatic lung segmentation from thoracic computed tomography scans using a hybrid approach with error detection. , 2009, Medical physics.

[69]  Xiangrong Zhou,et al.  Automatic segmentation and recognition of anatomical lung structures from high-resolution chest CT images , 2006, Comput. Medical Imaging Graph..

[70]  P. Jeffery,et al.  Structural and inflammatory changes in COPD: a comparison with asthma. , 1998, Thorax.

[71]  Yutaka Hata,et al.  LUNG LOBAR SEGMENTATION USING TUBULAR TISSUE DENSITY FROM MULTIDETECTOR-ROW CT IMAGES , 2010 .

[72]  Margrit Betke,et al.  Pulmonary fissure segmentation on CT , 2006, Medical Image Anal..