Parameter Estimation in Pair‐hidden Markov Models
暂无分享,去创建一个
Ana Arribas-Gil | Elisabeth Gassiat | Catherine Matias | C. Matias | E. Gassiat | A. Arribas-Gil | Ana Arribas-Gil
[1] J. Felsenstein,et al. An evolutionary model for maximum likelihood alignment of DNA sequences , 1991, Journal of Molecular Evolution.
[2] D. Politis,et al. Statistical Estimation , 2022 .
[3] I. Holmes,et al. A "Long Indel" model for evolutionary sequence alignment. , 2003, Molecular biology and evolution.
[4] J. Hein,et al. Statistical alignment: computational properties, homology testing and goodness-of-fit. , 2000, Journal of molecular biology.
[5] Thomas M. Cover,et al. Elements of Information Theory , 2005 .
[6] J. Kingman,et al. The Ergodic Theory of Subadditive Stochastic Processes , 1968 .
[7] Simon Cawley,et al. Applications of generalized pair hidden Markov models to alignment and gene finding problems , 2001, J. Comput. Biol..
[8] Vladimir I. Levenshtein,et al. Efficient reconstruction of sequences , 2001, IEEE Trans. Inf. Theory.
[9] Ian Holmes,et al. Using evolutionary Expectation Maximization to estimate indel rates , 2005, Bioinform..
[10] J. Felsenstein,et al. Inching toward reality: An improved likelihood model of sequence evolution , 2004, Journal of Molecular Evolution.
[11] Richard Durbin,et al. Comparative ab initio prediction of gene structures using pair HMMs , 2002, Bioinform..
[12] M. Miyamoto,et al. Sequence alignments and pair hidden Markov models using evolutionary history. , 2003, Journal of molecular biology.
[13] R. Z. Khasʹminskiĭ,et al. Statistical estimation : asymptotic theory , 1981 .
[14] L. Baum,et al. Statistical Inference for Probabilistic Functions of Finite State Markov Chains , 1966 .
[15] L. Sucheston. On mixing and the zero-one law☆ , 1963 .
[16] Sean R. Eddy,et al. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .
[17] Thomas M. Cover,et al. Elements of Information Theory (Wiley Series in Telecommunications and Signal Processing) , 2006 .
[18] M. Bishop,et al. Maximum likelihood alignment of DNA sequences. , 1986, Journal of molecular biology.
[19] B. Leroux. Maximum-likelihood estimation for hidden Markov models , 1992 .
[20] Uwe Rösler,et al. Convergence of the maximum a posteriori path estimator in hidden Markov models , 2002, IEEE Trans. Inf. Theory.
[21] Robert B. Ash,et al. Information Theory , 2020, The SAGE International Encyclopedia of Mass Media and Society.
[22] S. B. Needleman,et al. A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.
[23] J. Doob. Stochastic processes , 1953 .
[24] David J. C. MacKay,et al. Reliable communication over channels with insertions, deletions, and substitutions , 2001, IEEE Trans. Inf. Theory.
[25] Dirk Metzler,et al. Statistical alignment based on fragment insertion and deletion models , 2003, Bioinform..
[26] Asger Hobolth,et al. Applications of Hidden Markov Models for Characterization of Homologous DNA Sequences with a Common Gene , 2005, J. Comput. Biol..