Neural Network for Nanoscience Scanning Electron Microscope Image Recognition

In this paper we applied transfer learning techniques for image recognition, automatic categorization, and labeling of nanoscience images obtained by scanning electron microscope (SEM). Roughly 20,000 SEM images were manually classified into 10 categories to form a labeled training set, which can be used as a reference set for future applications of deep learning enhanced algorithms in the nanoscience domain. The categories chosen spanned the range of 0-Dimensional (0D) objects such as particles, 1D nanowires and fibres, 2D films and coated surfaces, and 3D patterned surfaces such as pillars. The training set was used to retrain on the SEM dataset and to compare many convolutional neural network models (Inception-v3, Inception-v4, ResNet). We obtained compatible results by performing a feature extraction of the different models on the same dataset. We performed additional analysis of the classifier on a second test set to further investigate the results both on particular cases and from a statistical point of view. Our algorithm was able to successfully classify around 90% of a test dataset consisting of SEM images, while reduced accuracy was found in the case of images at the boundary between two categories or containing elements of multiple categories. In these cases, the image classification did not identify a predominant category with a high score. We used the statistical outcomes from testing to deploy a semi-automatic workflow able to classify and label images generated by the SEM. Finally, a separate training was performed to determine the volume fraction of coherently aligned nanowires in SEM images. The results were compared with what was obtained using the Local Gradient Orientation method. This example demonstrates the versatility and the potential of transfer learning to address specific tasks of interest in nanoscience applications.

[1]  J. Berry,et al.  Image-based quantification of fiber alignment within electrospun tissue engineering scaffolds is related to mechanical anisotropy. , 2016, Journal of biomedical materials research. Part A.

[2]  R. Ebrahimpour,et al.  Improving ECG Classification Accuracy Using an Ensemble of Neural Network Modules , 2011, PloS one.

[3]  Qiang Yang,et al.  A Survey on Transfer Learning , 2010, IEEE Transactions on Knowledge and Data Engineering.

[4]  Michael Unser,et al.  Transforms and Operators for Directional Bioimage Analysis: A Survey. , 2016, Advances in anatomy, embryology, and cell biology.

[5]  Jaewook Nam,et al.  Image analysis for measuring rod network properties , 2015 .

[6]  Li Fei-Fei,et al.  ImageNet: A large-scale hierarchical image database , 2009, CVPR.

[7]  Michael Unser,et al.  Effect of Aging on Elastin Functionality in Human Cerebral Arteries , 2008, Stroke.

[8]  Shitao Tang,et al.  Feature Extraction via Recurrent Random Deep Ensembles and its Application in Gruop-level Happiness Estimation , 2017, ArXiv.

[9]  Mohammad A. Al-Khedher,et al.  Quality classification via Raman identification and SEM analysis of carbon nanotube bundles using artificial neural networks , 2007 .

[10]  Erik Schultes,et al.  The FAIR Guiding Principles for scientific data management and stewardship , 2016, Scientific Data.

[11]  Sergei V. Kalinin,et al.  Functional recognition imaging using artificial neural networks: applications to rapid cellular identification via broadband electromechanical response , 2009, Nanotechnology.

[12]  John Alexander,et al.  Modulation of anisotropy in electrospun tissue-engineering scaffolds: Analysis of fiber alignment by the fast Fourier transform. , 2006, Biomaterials.

[13]  A. F. Adams,et al.  The Survey , 2021, Dyslexia in Higher Education.

[14]  Luděk Frank,et al.  Advances in scanning electron microscopy , 2002 .

[15]  P. Yang Nanowire Photonics , 2007, 2007 International Nano-Optoelectronics Workshop.

[16]  Lin Xu,et al.  Nanowire electrodes for electrochemical energy storage devices. , 2014, Chemical reviews.

[17]  Sergey Ioffe,et al.  Rethinking the Inception Architecture for Computer Vision , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[18]  Oludayo O. Olugbara,et al.  Improved Classification of Lung Cancer Using Radial Basis Function Neural Network with Affine Transforms of Voss Representation , 2015, PloS one.

[19]  Sergey Ioffe,et al.  Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning , 2016, AAAI.

[20]  Jia Deng,et al.  A large-scale hierarchical image database , 2009, CVPR 2009.

[21]  Bülent Yener,et al.  Image driven machine learning methods for microstructure recognition , 2016 .

[22]  Nasser Mohieddin Abukhdeir,et al.  Automated quantification of one-dimensional nanostructure alignment on surfaces , 2016, Nanotechnology.

[23]  Yuan Yu,et al.  TensorFlow: A system for large-scale machine learning , 2016, OSDI.

[24]  Lei Jiang,et al.  The art of aligning one-dimensional (1D) nanostructures. , 2012, Chemical Society reviews.