Transcriptome analysis of intraspecific competition in Arabidopsis thaliana reveals organ-specific signatures related to nutrient acquisition and general stress response pathways

[1]  Diego Segond,et al.  Iron deficiency affects plant defence responses and confers resistance to Dickeya dadantii and Botrytis cinerea. , 2012, Molecular plant pathology.

[2]  R. Pierik,et al.  Auxin transport through PIN-FORMED 3 (PIN3) controls shade avoidance and fitness during competition , 2010, Proceedings of the National Academy of Sciences.

[3]  C. V. Jongeneel,et al.  EuroDia: a beta-cell gene expression resource , 2010 .

[4]  H. Bais,et al.  Kin recognition in plants: a mysterious behaviour unsolved. , 2010, Journal of experimental botany.

[5]  K. Boege.  Induced responses to competition and herbivory: natural selection on multi-trait phenotypic plasticity. , 2010, Ecology.

[6]  J. Vivanco,et al.  Plant neighbor identity influences plant biochemistry and physiology related to defense , 2010, BMC Plant Biology.

[7]  Zhou Du,et al.  agriGO: a GO analysis toolkit for the agricultural community , 2010, Nucleic Acids Res..

[8]  R. Pierik,et al.  Induced biogenic volatile organic compounds from plants Biogenic volatile organic compounds and plant competition , 2010 .

[9]  R. Breitling,et al.  Coronatine-Insensitive 1 (COI1) Mediates Transcriptional Responses of Arabidopsis thaliana to External Potassium Supply , 2010, Molecular plant.

[10]  J. Iriondo,et al.  Growing with siblings: a common ground for cooperation or for fiercer competition among plants? , 2009, Proceedings of the Royal Society B: Biological Sciences.

[11]  Ariel Novoplansky,et al.  Picking battles wisely: plant behaviour under competition. , 2009, Plant, cell & environment.

[12]  C. Ballaré,et al.  Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity , 2009, Proceedings of the National Academy of Sciences.

[13]  Joanne Chory,et al.  Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants , 2008, Cell.

[14]  Jill P. Mesirov,et al.  GSEA-P: a desktop application for Gene Set Enrichment Analysis , 2007, Bioinform..

[15]  M. Carabelli,et al.  Canopy shade causes a rapid and transient arrest in leaf development through auxin-induced cytokinin oxidase activity. , 2007, Genes & development.

[16]  Xianzhong Wu,et al.  A Putative Hydroxysteroid Dehydrogenase Involved in Regulating Plant Growth and Development1 , 2007, Plant Physiology.

[17]  Susan A Dudley,et al.  Kin recognition in an annual plant , 2007, Biology Letters.

[18]  N. Amornsiripanitch,et al.  A Genomic Approach to Identify Regulatory Nodes in the Transcriptional Network of Systemic Acquired Resistance in Plants , 2006, PLoS pathogens.

[19]  Jennifer L. Nemhauser,et al.  Different Plant Hormones Regulate Similar Processes through Largely Nonoverlapping Transcriptional Responses , 2006, Cell.

[20]  I. Baldwin,et al.  Transcriptional responses of Solanum nigrum to methyl jasmonate and competition: a glasshouse and field study , 2006 .

[21]  Pablo Tamayo,et al.  Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Martin J. Mueller,et al.  Signal signature and transcriptome changes of Arabidopsis during pathogen and insect attack. , 2005, Molecular plant-microbe interactions : MPMI.

[23]  Yves Moreau,et al.  Benchmarking the CATMA Microarray. A Novel Tool forArabidopsis Transcriptome Analysis1[w] , 2005, Plant Physiology.

[24]  Philippe Reymond,et al.  A Conserved Transcript Pattern in Response to a Specialist and a Generalist Herbivorew⃞ , 2004, The Plant Cell Online.

[25]  P. Zimmermann,et al.  GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox1[w] , 2004, Plant Physiology.

[26]  A. Agrawal.  RESISTANCE AND SUSCEPTIBILITY OF MILKWEED: COMPETITION, ROOT HERBIVORY, AND PLANT GENETIC VARIATION , 2004 .

[27]  V. Shulaev,et al.  When Defense Pathways Collide. The Response of Arabidopsis to a Combination of Drought and Heat Stress1[w] , 2004, Plant Physiology.

[28]  R. Pierik,et al.  Canopy studies on ethylene-insensitive tobacco identify ethylene as a novel element in blue light and plant-plant signalling. , 2004, The Plant journal : for cell and molecular biology.

[29]  Sunchung Park,et al.  Journal of Experimental Botany, Page 1 of 14 DOI: 10.1093/jxb/erg304 , 2003 .

[30]  J. Tumlinson,et al.  Nitrogen Deficiency Increases Volicitin-Induced Volatile Emission, Jasmonic Acid Accumulation, and Ethylene Sensitivity in Maize1 , 2003, Plant Physiology.

[31]  Ariel Novoplansky,et al.  Self/non‐self discrimination in roots , 2003 .

[32]  John D. Storey,et al.  Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[33]  H. Lischke,et al.  Cost of resistance and tolerance under competition: the defense-stress benefit hypothesis , 2003, Evolutionary Ecology.

[34]  J. Bergelson,et al.  Interspecific competition affects growth and herbivore damage of Brassica napus in the field , 2002, Plant Ecology.

[35]  F. Stuart Chapin,et al.  Resource Availability and Plant Antiherbivore Defense , 1985, Science.

[36]  M. Geisler,et al.  Upregulation of photosynthesis genes, and downregulation of stress defense genes, is the response of Arabidopsis thaliana shoots to intraspecific competition. , 2012 .

[37]  Jorge J Casal,et al.  Shade Avoidance , 2012, The arabidopsis book.

[38]  L. Keller,et al.  Competitive ability not kinship affects growth of Arabidopsis thaliana accessions. , 2010, The New phytologist.

[39]  M. Grant,et al.  Plant responses to potassium deficiencies: a role for potassium transport proteins. , 2006, Journal of experimental botany.

[40]  J. A. Buso,et al.  BMC Plant Biology , 2003 .