Rapid compaction during RNA folding
暂无分享,去创建一个
Sebastian Doniach | Daniel Herschlag | Mark W Tate | Sol M Gruner | Vijay Pande | Simon G J Mochrie | Rick Russell | Lois Pollack | V. Pande | D. Herschlag | S. Mochrie | R. Russell | I. Millett | S. Doniach | L. Pollack | M. Tate | S. Gruner | Bradley J Nakatani | Lisa W Kwok | L. Kwok | Ian S Millett | Bradley Nakatani
[1] Y. Amemiya,et al. Stopped-flow apparatus for x-ray scattering at subzero temperature , 1989 .
[2] R. L. Baldwin. Pulsed H/D-exchange studies of folding intermediates , 1993 .
[3] M R Chance,et al. RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. , 1998, Science.
[4] K. Dill. Theory for the folding and stability of globular proteins. , 1985, Biochemistry.
[5] D. K. Treiber,et al. Beyond kinetic traps in RNA folding. , 2001, Current opinion in structural biology.
[6] P. Sigler. An analysis of the structure of tRNA. , 1975, Annual review of biophysics and bioengineering.
[7] T. Cech,et al. Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes. , 1988, Biochemistry.
[8] S M Gruner,et al. Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[9] C. Fierke,et al. Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp. , 1996, Biochemistry.
[10] P. Shewry,et al. Direct Kinetic Evidence for Folding via a Highly Compact, Misfolded State* , 1999, The Journal of Biological Chemistry.
[11] N. Darnton,et al. Time resolved collapse of a folding protein observed with small angle x-ray scattering. , 2001, Physical review letters.
[12] D. Thirumalai,et al. Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations. , 2001, Journal of molecular biology.
[13] D. Thirumalai,et al. Folding of RNA involves parallel pathways. , 1997, Journal of molecular biology.
[14] Laurence Lurio,et al. Design and characterization of an undulator beamline optimized for small-angle coherent X-ray scattering at the Advanced Photon Source , 1999 .
[15] O. Glatter,et al. 19 – Small-Angle X-ray Scattering , 1973 .
[16] C. Ralston,et al. Folding mechanism of the Tetrahymena ribozyme P4-P6 domain. , 2000, Biochemistry.
[17] E Westhof,et al. New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. , 1996, Chemistry & biology.
[18] P. Zarrinkar,et al. Kinetic intermediates in RNA folding. , 1994, Science.
[19] X. Zhuang,et al. A single-molecule study of RNA catalysis and folding. , 2000, Science.
[20] G. Whitesides,et al. Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane). , 1998, Analytical chemistry.
[21] X. Zhuang,et al. Exploring the folding landscape of a structured RNA , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[22] D. Baker,et al. Chain collapse can occur concomitantly with the rate-limiting step in protein folding , 1999, Nature Structural Biology.
[23] T. Sosnick,et al. The barriers in protein folding , 1994, Nature Structural Biology.
[24] G. Rose,et al. Is counterion delocalization responsible for collapse in RNA folding? , 2000, Biochemistry.
[25] D. Herschlag,et al. New pathways in folding of the Tetrahymena group I RNA enzyme. , 1999, Journal of molecular biology.
[26] C. Kundrot,et al. Crystal Structure of a Group I Ribozyme Domain: Principles of RNA Packing , 1996, Science.
[27] J. Israelachvili. Intermolecular and surface forces , 1985 .
[28] K. Weeks,et al. A collapsed state functions to self-chaperone RNA folding into a native ribonucleoprotein complex , 2001, Nature Structural Biology.
[29] S. Woodson,et al. Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA. , 2000, Journal of molecular biology.
[30] F. Young. Biochemistry , 1955, The Indian Medical Gazette.
[31] S. Marqusee,et al. Comparison of equilibrium and kinetic approaches for determining protein folding mechanisms. , 2000, Advances in protein chemistry.
[32] D. Herschlag. RNA Chaperones and the RNA Folding Problem (*) , 1995, The Journal of Biological Chemistry.
[33] S. Jackson,et al. How do small single-domain proteins fold? , 1998, Folding & design.
[34] S Doniach,et al. Changes in biomolecular conformation seen by small angle X-ray scattering. , 2001, Chemical reviews.
[35] T. Cech,et al. Multiple folding pathways for the P4-P6 RNA domain. , 2000, Biochemistry.
[36] D. Herschlag,et al. Small angle X-ray scattering reveals a compact intermediate in RNA folding , 2000, Nature Structural Biology.
[37] T. Cech,et al. Defining the inside and outside of a catalytic RNA molecule. , 1989, Science.
[38] Bo Jönsson,et al. Electrostatic correlations fold DNA , 1999 .
[39] D. Thirumalai,et al. Early events in RNA folding. , 2001, Annual review of physical chemistry.
[40] E. Henry,et al. [8] Singular value decomposition: Application to analysis of experimental data , 1992 .
[41] D. Herschlag,et al. Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway. , 2001, Journal of molecular biology.
[42] W. Ehrenberg,et al. Small-Angle X-Ray Scattering , 1952, Nature.
[43] D. Turner,et al. Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate. , 1990, Biochemistry.
[44] K. Hodgson,et al. Kinetics of lysozyme refolding: structural characterization of a non-specifically collapsed state using time-resolved X-ray scattering. , 1998, Journal of molecular biology.
[45] E. Kandel,et al. Control of Memory Formation Through Regulated Expression of a CaMKII Transgene , 1996, Science.
[46] I. Tinoco,et al. How RNA folds. , 1999, Journal of molecular biology.
[47] O. Ptitsyn,et al. Molten globule and protein folding. , 1995, Advances in protein chemistry.
[48] Karen L. Buchmueller,et al. A collapsed non-native RNA folding state , 2000, Nature Structural Biology.
[49] K. Hodgson,et al. A Wide-Bandpass Multilayer Monochromator for Biological Small-Angle Scattering and Fiber Diffraction Studies , 1998 .