Compartmentalized Devices as Tools for Investigation of Human Brain Network Dynamics

Neuropsychiatric disorders have traditionally been difficult to study due to the complexity of the human brain and limited availability of human tissue. Induced pluripotent stem (iPS) cells provide a promising avenue to further our understanding of human disease mechanisms, but traditional 2D cell cultures can only provide a limited view of the neural circuits. To better model complex brain neurocircuitry, compartmentalized culturing systems and 3D organoids have been developed. Early compartmentalized devices demonstrated how neuronal cell bodies can be isolated both physically and chemically from neurites. Soft lithographic approaches have advanced this approach and offer the tools to construct novel model platforms, enabling circuit‐level studies of disease, which can accelerate mechanistic studies and drug candidate screening. In this review, we describe some of the common technologies used to develop such systems and discuss how these lithographic techniques have been used to advance our understanding of neuropsychiatric disease. Finally, we address other in vitro model platforms such as 3D culture systems and organoids and compare these models with compartmentalized models. We ask important questions regarding how we can further harness iPS cells in these engineered culture systems for the development of improved in vitro models. Developmental Dynamics 248:65–77, 2019. © 2018 Wiley Periodicals, Inc.

[1]  Li Li,et al.  Modeling neurological diseases using iPSC-derived neural cells , 2017, Cell and Tissue Research.

[2]  Nitish Thakor,et al.  Compartmentalized microfluidic culture platform to study mechanism of paclitaxel-induced axonal degeneration , 2009, Experimental Neurology.

[3]  Peter M Visscher,et al.  Large-scale genomics unveils the genetic architecture of psychiatric disorders , 2014, Nature Neuroscience.

[4]  S. Hyman How Far Can Mice Carry Autism Research? , 2014, Cell.

[5]  Stefan R. Pulver,et al.  Ultra-sensitive fluorescent proteins for imaging neuronal activity , 2013, Nature.

[6]  Hongjun Song,et al.  Modeling psychiatric disorders with patient-derived iPSCs , 2016, Current Opinion in Neurobiology.

[7]  Jos Joore,et al.  High-throughput compound evaluation on 3D networks of neurons and glia in a microfluidic platform , 2016, Scientific Reports.

[8]  Jacob G. Bernstein,et al.  Optogenetic tools for analyzing the neural circuits of behavior , 2011, Trends in Cognitive Sciences.

[9]  S. Hyman Back to basics: luring industry back into neuroscience , 2016, Nature Neuroscience.

[10]  N. Jeon,et al.  Microfluidic culture platform for neuroscience research , 2006, Nature Protocols.

[11]  Yasuyuki S. Kida,et al.  In Vitro Reconstruction of Neuronal Networks Derived from Human iPS Cells Using Microfabricated Devices , 2016, PloS one.

[12]  G. Whitesides,et al.  Soft lithography for micro- and nanoscale patterning , 2010, Nature Protocols.

[13]  D. Panchision,et al.  Concise Review: Progress and Challenges in Using Human Stem Cells for Biological and Therapeutics Discovery: Neuropsychiatric Disorders , 2016, Stem cells.

[14]  William C Mobley,et al.  Real-time imaging of axonal transport of quantum dot-labeled BDNF in primary neurons. , 2014, Journal of visualized experiments : JoVE.

[15]  G. Whitesides,et al.  Soft Lithography. , 1998, Angewandte Chemie.

[16]  A. Bailey,et al.  Autism as a strongly genetic disorder: evidence from a British twin study , 1995, Psychological Medicine.

[17]  C. Cotman,et al.  A microfluidic culture platform for CNS axonal injury, regeneration and transport , 2005, Nature Methods.

[18]  Karl-Heinz Krause,et al.  A 3D printed microfluidic device for production of functionalized hydrogel microcapsules for culture and differentiation of human Neuronal Stem Cells (hNSC). , 2016, Lab on a chip.

[19]  Neuroligin 3 R451C mutation alters electroencephalography spectral activity in an animal model of autism spectrum disorders , 2017, Molecular Brain.

[20]  P. Arlotta,et al.  The promises and challenges of human brain organoids as models of neuropsychiatric disease , 2016, Nature Medicine.

[21]  David W. Nauen,et al.  Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure , 2016, Cell.

[22]  Jia Qian Wu,et al.  Single-cell RNA-sequencing of the brain , 2017, Clinical and Translational Medicine.

[23]  Jennifer A. Erwin,et al.  Efficient Generation of CA3 Neurons from Human Pluripotent Stem Cells Enables Modeling of Hippocampal Connectivity In Vitro. , 2018, Cell stem cell.

[24]  Thomas Vierbuchen,et al.  Direct conversion of fibroblasts to functional neurons by defined factors , 2010, Nature.

[25]  M. Yarmush,et al.  An organotypic uniaxial strain model using microfluidics. , 2013, Lab on a chip.

[26]  C. Wilcox,et al.  MHC-specific cytotoxic T lymphocyte killing of dissociated sympathetic neuronal cultures. , 1987, The American journal of pathology.

[27]  A. Kesselheim,et al.  Two decades of new drug development for central nervous system disorders , 2015, Nature Reviews Drug Discovery.

[28]  Laura J. Scott,et al.  Psychiatric genome-wide association study analyses implicate neuronal, immune and histone pathways , 2015, Nature Neuroscience.

[29]  Thomas C. Südhof,et al.  Autism-linked neuroligin-3 R451C mutation differentially alters hippocampal and cortical synaptic function , 2011, Proceedings of the National Academy of Sciences.

[30]  F. Johansson,et al.  Three-dimensional functional human neuronal networks in uncompressed low-density electrospun fiber scaffolds. , 2017, Nanomedicine : nanotechnology, biology, and medicine.

[31]  T. Kunath,et al.  Modeling Parkinson's disease with induced pluripotent stem cells harboring α‐synuclein mutations , 2017, Brain pathology.

[32]  Noo Li Jeon,et al.  Microfluidic and compartmentalized platforms for neurobiological research. , 2011, Critical reviews in biomedical engineering.

[33]  S. Priori,et al.  CaV1.2 Calcium Channel Dysfunction Causes a Multisystem Disorder Including Arrhythmia and Autism , 2004, Cell.

[34]  W. Chiu,et al.  TRiC subunits enhance BDNF axonal transport and rescue striatal atrophy in Huntington’s disease , 2016, Proceedings of the National Academy of Sciences.

[35]  M. Gillette,et al.  Over a Century of Neuron Culture: From the Hanging Drop to Microfluidic Devices , 2012, The Yale journal of biology and medicine.

[36]  J. Stitzel,et al.  Impact of human D398N single nucleotide polymorphism on intracellular calcium response mediated by α3β4α5 nicotinic acetylcholine receptors , 2012, Neuropharmacology.

[37]  Megan E. Piper,et al.  Genetic variation (CHRNA5), medication (combination nicotine replacement therapy vs. varenicline), and smoking cessation. , 2015, Drug and alcohol dependence.

[38]  R. Campenot,et al.  Construction and Use of Compartmented Cultures for Studies of Cell Biology of Neurons , 2001 .

[39]  Alexander Revzin,et al.  Functional imaging of neuron–astrocyte interactions in a compartmentalized microfluidic device , 2016, Microsystems & Nanoengineering.

[40]  S. L. Forsberg,et al.  Epigenetics and cerebral organoids: promising directions in autism spectrum disorders , 2018, Translational Psychiatry.

[41]  Kevin J. Staley,et al.  Microfluidics and multielectrode array-compatible organotypic slice culture method , 2009, Journal of Neuroscience Methods.

[42]  M. Owen,et al.  Genetics of schizophrenia , 2005, Current Opinion in Behavioral Sciences.

[43]  Arnold R. Kriegstein,et al.  The use of brain organoids to investigate neural development and disease , 2017, Nature Reviews Neuroscience.

[44]  Jonathan A. Bernstein,et al.  Assembly of functionally integrated human forebrain spheroids , 2017, Nature.

[45]  Pascal Monceau,et al.  Combining Microfluidics, Optogenetics and Calcium Imaging to Study Neuronal Communication In Vitro , 2015, PloS one.

[46]  A. Muotri,et al.  Layered hydrogels accelerate iPSC-derived neuronal maturation and reveal migration defects caused by MeCP2 dysfunction , 2016, Proceedings of the National Academy of Sciences.

[47]  S. Nelson,et al.  Excitatory/Inhibitory Balance and Circuit Homeostasis in Autism Spectrum Disorders , 2015, Neuron.

[48]  J. Wells,et al.  Pluripotent stem cell-derived organoids: using principles of developmental biology to grow human tissues in a dish , 2017, Development.

[49]  Erika Pastrana,et al.  Optogenetics: controlling cell function with light , 2011, Nature Methods.

[50]  F. Gage,et al.  Modeling psychiatric disorders through reprogramming , 2011, Disease Models & Mechanisms.

[51]  Hao Li,et al.  An in vivo model of functional and vascularized human brain organoids , 2018, Nature Biotechnology.

[52]  Howard Y. Chang,et al.  Generation of pure GABAergic neurons by transcription factor programming , 2017, Nature Methods.

[53]  Mark T. Harnett,et al.  An optimized fluorescent probe for visualizing glutamate neurotransmission , 2013, Nature Methods.

[54]  É. Fino,et al.  Reconstituting Corticostriatal Network on-a-Chip Reveals the Contribution of the Presynaptic Compartment to Huntington's Disease. , 2018, Cell reports.

[55]  Rouhollah Habibey,et al.  A multielectrode array microchannel platform reveals both transient and slow changes in axonal conduction velocity , 2017, Scientific Reports.

[56]  S. Kushner,et al.  A simplified protocol for differentiation of electrophysiologically mature neuronal networks from human induced pluripotent stem cells , 2017, Molecular Psychiatry.

[57]  Nitish Thakor,et al.  Valve-based microfluidic compression platform: single axon injury and regrowth. , 2011, Lab on a chip.

[58]  Wael Mismar,et al.  Examination of axonal injury and regeneration in micropatterned neuronal culture using pulsed laser microbeam dissection. , 2010, Lab on a chip.

[59]  Chun-Ting Lee,et al.  3D brain Organoids derived from pluripotent stem cells: promising experimental models for brain development and neurodegenerative disorders , 2017, Journal of Biomedical Science.

[60]  Y. Shinoda,et al.  Animal models of autism spectrum disorder (ASD): a synaptic-level approach to autistic-like behavior in mice. , 2013, Experimental animals.

[61]  H. van Bokhoven,et al.  Inhibitory control of the excitatory/inhibitory balance in psychiatric disorders , 2018, F1000Research.

[62]  Thomas C. Südhof,et al.  Autism-associated SHANK3 haploinsufficiency causes Ih channelopathy in human neurons , 2016, Science.

[63]  K. Brennand,et al.  Cerebral organoids reveal early cortical maldevelopment in schizophrenia—computational anatomy and genomics, role of FGFR1 , 2017, Translational Psychiatry.

[64]  Jean-Louis Viovy,et al.  Axon diodes for the reconstruction of oriented neuronal networks in microfluidic chambers. , 2011, Lab on a chip.

[65]  T. Ichisaka,et al.  Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors , 2007, Cell.

[66]  Ruili Huang,et al.  Identification of small-molecule inhibitors of Zika virus infection and induced neural cell death via a drug repurposing screen , 2016, Nature Medicine.

[67]  Renaud Renault,et al.  Asymmetric axonal edge guidance: a new paradigm for building oriented neuronal networks. , 2016, Lab on a chip.

[68]  Marius Wernig,et al.  μNeurocircuitry: Establishing in vitro models of neurocircuits with human neurons. , 2017, Technology.

[69]  S. Hyman,et al.  Improving and Accelerating Drug Development for Nervous System Disorders , 2014, Neuron.

[70]  Zhiping P. Pang,et al.  Increased nicotine response in iPSC-derived human neurons carrying the CHRNA5 N398 allele , 2016, Scientific Reports.

[71]  Joel Gelernter,et al.  A CHRNA5 Smoking Risk Variant Decreases the Aversive Effects of Nicotine in Humans , 2015, Neuropsychopharmacology.

[72]  R. Campenot,et al.  Retrograde transport of neurotrophins: fact and function. , 2004, Journal of neurobiology.

[73]  Noo Li Jeon,et al.  Microfluidic Multicompartment Device for Neuroscience Research. , 2003, Langmuir : the ACS journal of surfaces and colloids.

[74]  F. Gage,et al.  KCC2 rescues functional deficits in human neurons derived from patients with Rett syndrome , 2016, Proceedings of the National Academy of Sciences.

[75]  Jacqueline N. Crawley,et al.  Translational animal models of autism and neurodevelopmental disorders , 2012, Dialogues in clinical neuroscience.

[76]  Noo Li Jeon,et al.  A microfluidic based in vitro model of synaptic competition , 2014, Molecular and Cellular Neuroscience.

[77]  P. Pasceri,et al.  Rett syndrome induced pluripotent stem cell-derived neurons reveal novel neurophysiological alterations , 2012, Molecular Psychiatry.

[78]  Yana Pigareva,et al.  Design of Cultured Neuron Networks in vitro with Predefined Connectivity Using Asymmetric Microfluidic Channels , 2017, Scientific Reports.

[79]  A. Cunningham,et al.  Axonal transport of herpes simplex virions to epidermal cells: evidence for a specialized mode of virus transport and assembly. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[80]  R. Hill,et al.  A two-compartment in vitro model for studies of modulation of nociceptive transmission , 2001, Journal of Neuroscience Methods.

[81]  Joost le Feber,et al.  Barbed channels enhance unidirectional connectivity between neuronal networks cultured on multi electrode arrays , 2015, Front. Neurosci..

[82]  Nicholas G Martin,et al.  Cholinergic nicotinic receptor genes implicated in a nicotine dependence association study targeting 348 candidate genes with 3713 SNPs. , 2007, Human molecular genetics.

[83]  Thomas Vierbuchen,et al.  Induction of human neuronal cells by defined transcription factors , 2011, Nature.

[84]  G. Whitesides,et al.  Gradients of substrate-bound laminin orient axonal specification of neurons , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[85]  L. Studer,et al.  Pluripotent stem cells in neuropsychiatric disorders , 2017, Molecular Psychiatry.

[86]  S. Hyman,et al.  Animal models of neuropsychiatric disorders , 2010, Nature Neuroscience.

[87]  Nick Barker,et al.  Organoids as an in vitro model of human development and disease , 2016, Nature Cell Biology.

[88]  S. Yamanaka,et al.  Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors , 2006, Cell.

[89]  D. Kaplan,et al.  The TrkB-Shc Site Signals Neuronal Survival and Local Axon Growth via MEK and PI3-Kinase , 2000, Neuron.

[90]  R. Campenot,et al.  Local control of neurite development by nerve growth factor. , 1977, Proceedings of the National Academy of Sciences of the United States of America.