PtWOX11 acts as master regulator conducting the expression of key transcription factors to induce de novo shoot organogenesis in poplar

[1]  Yuxin Hu,et al.  The WOX11–LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture , 2018, Plant & cell physiology.

[2]  Caihuan Tian,et al.  Cytokinin Signaling Activates WUSCHEL Expression during Axillary Meristem Initiation[OPEN] , 2017, Plant Cell.

[3]  Hai Huang,et al.  Divergent regeneration‐competent cells adopt a common mechanism for callus initiation in angiosperms , 2017, Regeneration.

[4]  H. Lian,et al.  A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration , 2017, Plant Cell.

[5]  K. Morohashi,et al.  WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis[OPEN] , 2016, Plant Cell.

[6]  Edwin Cuppen,et al.  The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots[OPEN] , 2016, Plant Cell.

[7]  Lin Xu,et al.  Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis1 , 2016, Plant Physiology.

[8]  A. Iwase,et al.  Plant regeneration: cellular origins and molecular mechanisms , 2016, Development.

[9]  Meng Xu,et al.  Two WUSCHEL-related HOMEOBOX genes, PeWOX11a and PeWOX11b, are involved in adventitious root formation of poplar. , 2015, Physiologia plantarum.

[10]  E. Meyerowitz,et al.  PLETHORA Genes Control Regeneration by a Two-Step Mechanism , 2015, Current Biology.

[11]  S. Kawano,et al.  Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1[OPEN] , 2015, Plant Cell.

[12]  H. Ezura,et al.  WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed , 2015, Journal of Plant Research.

[13]  M. Sugiyama.  Historical review of research on plant cell dedifferentiation , 2015, Journal of Plant Research.

[14]  Jie Chen,et al.  Transcript Profiling Reveals Auxin and Cytokinin Signaling Pathways and Transcription Regulation during In Vitro Organogenesis of Ramie (Boehmeria nivea L. Gaud) , 2014, PloS one.

[15]  B. Gilles,et al.  An Auxin-Mediated Shift toward Growth Isotropy Promotes Organ Formation at the Shoot Meristem in Arabidopsis , 2014, Current Biology.

[16]  Gang Li,et al.  TRANSLOCASE OF THE INNER MEMBRANE9 and 10 Are Essential for Maintaining Mitochondrial Function during Early Embryo Cell and Endosperm Free Nucleus Divisions in Arabidopsis1[C][W][OPEN] , 2014, Plant Physiology.

[17]  Y. Ruan.  Sucrose metabolism: gateway to diverse carbon use and sugar signaling. , 2014, Annual review of plant biology.

[18]  Mengzhu Lu,et al.  WUSCHEL-related Homeobox genes in Populus tomentosa: diversified expression patterns and a functional similarity in adventitious root formation , 2014, BMC Genomics.

[19]  Kalika Prasad,et al.  Competence and regulatory interactions during regeneration in plants , 2014, Front. Plant Sci..

[20]  Hai Huang,et al.  WOX11 and 12 Are Involved in the First-Step Cell Fate Transition during de Novo Root Organogenesis in Arabidopsis[W] , 2014, Plant Cell.

[21]  Nobutaka Mitsuda,et al.  Arabidopsis WIND1 induces callus formation in rapeseed, tomato, and tobacco , 2013, Plant signaling & behavior.

[22]  B. Sundberg,et al.  A genome-wide screen for ethylene-induced ethylene response factors (ERFs) in hybrid aspen stem identifies ERF genes that modify stem growth and wood properties. , 2013, The New phytologist.

[23]  W. Dewitte,et al.  The Arabidopsis homeobox gene SHOOT MERISTEMLESS has cellular and meristem-organisational roles with differential requirements for cytokinin and CYCD3 activity. , 2013, The Plant journal : for cell and molecular biology.

[24]  B. Scheres,et al.  Phyllotaxis and Rhizotaxis in Arabidopsis Are Modified by Three PLETHORA Transcription Factors , 2013, Current Biology.

[25]  Cole Trapnell,et al.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.

[26]  P. Dhonukshe,et al.  Formative cell divisions: principal determinants of plant morphogenesis. , 2013, Plant & cell physiology.

[27]  N. Provart,et al.  Incipient stem cell niche conversion in tissue culture: using a systems approach to probe early events in WUSCHEL-dependent conversion of lateral root primordia into shoot meristems. , 2013, The Plant journal : for cell and molecular biology.

[28]  S. von Arnold,et al.  Expression of PaNAC01, a Picea abies CUP-SHAPED COTYLEDON orthologue, is regulated by polar auxin transport and associated with differentiation of the shoot apical meristem and formation of separated cotyledons , 2012, Annals of botany.

[29]  Yuxin Hu,et al.  LATERAL ORGAN BOUNDARIES DOMAIN transcription factors direct callus formation in Arabidopsis regeneration , 2012, Cell Research.

[30]  M. Catterou,et al.  De novo shoot organogenesis: from art to science. , 2011, Trends in plant science.

[31]  X. Zhang,et al.  DNA Methylation and Histone Modifications Regulate De Novo Shoot Regeneration in Arabidopsis by Modulating WUSCHEL Expression and Auxin Signaling , 2011, PLoS genetics.

[32]  M. Seki,et al.  The AP2/ERF Transcription Factor WIND1 Controls Cell Dedifferentiation in Arabidopsis , 2011, Current Biology.

[33]  S. Regan,et al.  Members of the LATERAL ORGAN BOUNDARIES DOMAIN Transcription Factor Family Are Involved in the Regulation of Secondary Growth in Populus[W] , 2010, Plant Cell.

[34]  Elliot M Meyerowitz,et al.  Arabidopsis regeneration from multiple tissues occurs via a root development pathway. , 2010, Developmental cell.

[35]  D. Yevtushenko,et al.  Efficient Agrobacterium-mediated transformation of commercial hybrid poplar Populus nigra L. × P. maximowiczii A. Henry , 2010, Plant Cell Reports.

[36]  T. Laux,et al.  The WUS homeobox-containing (WOX) protein family , 2009, Genome Biology.

[37]  T. Mockler,et al.  Genome scale transcriptome analysis of shoot organogenesis in Populus , 2009, BMC Plant Biology.

[38]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[39]  P. Gresshoff,et al.  The association of homeobox gene expression with stem cell formation and morphogenesis in cultured Medicago truncatula , 2009, Planta.

[40]  T. Borodina,et al.  Transcriptome analysis by strand-specific sequencing of complementary DNA , 2009, Nucleic acids research.

[41]  S. O'Neill,et al.  Auxin-induced WUS expression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis , 2009, The Plant journal : for cell and molecular biology.

[42]  Limin Huang,et al.  The WUSCHEL-Related Homeobox Gene WOX11 Is Required to Activate Shoot-Borne Crown Root Development in Rice[C][W] , 2009, The Plant Cell Online.

[43]  L. Laurens,et al.  Pluripotency of Arabidopsis xylem pericycle underlies shoot regeneration from root and hypocotyl explants grown in vitro. , 2009, The Plant journal : for cell and molecular biology.

[44]  Elliot M Meyerowitz,et al.  Pattern formation during de novo assembly of the Arabidopsis shoot meristem , 2007, Development.

[45]  S. Howell,et al.  Developmental steps in acquiring competence for shoot development in Arabidopsis tissue culture , 2007, Planta.

[46]  C. Douglas,et al.  Populus: a model system for plant biology. , 2007, Annual review of plant biology.

[47]  Lei Li,et al.  Distinct reorganization of the genome transcription associates with organogenesis of somatic embryo, shoots, and roots in rice , 2007, Plant Molecular Biology.

[48]  B. Rolfe,et al.  Factors involved in root formation in Medicago truncatula. , 2006, Journal of experimental botany.

[49]  G. Angenent,et al.  Heterologous expression of the BABY BOOM AP2/ERF transcription factor enhances the regeneration capacity of tobacco (Nicotiana tabacum L.) , 2006, Planta.

[50]  A. Groover,et al.  The Populus homeobox gene ARBORKNOX1 reveals overlapping mechanisms regulating the shoot apical meristem and the vascular cambium , 2006, Plant Molecular Biology.

[51]  Thomas Lengauer,et al.  Improved scoring of functional groups from gene expression data by decorrelating GO graph structure , 2006, Bioinform..

[52]  D. Nettleton,et al.  Gene Expression Programs during Shoot, Root, and Callus Development in Arabidopsis Tissue Culture1[W][OA] , 2006, Plant Physiology.

[53]  R. Hellens,et al.  Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants , 2005, Plant Methods.

[54]  S. Filichkin,et al.  Genetic transformation: a powerful tool for dissection of adaptive traits in trees. , 2005, The New phytologist.

[55]  R. Amasino,et al.  The PLETHORA Genes Mediate Patterning of the Arabidopsis Root Stem Cell Niche , 2004, Cell.

[56]  John D. Storey,et al.  Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[57]  K. Hiratsu,et al.  Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. , 2003, The Plant journal : for cell and molecular biology.

[58]  M. Tasaka,et al.  The CUP-SHAPED COTYLEDON genes promote adventitious shoot formation on calli. , 2003, Plant & cell physiology.

[59]  V. Sharma,et al.  Ectopic Expression of BABY BOOM Triggers a Conversion from Vegetative to Embryonic Growth Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001941. , 2002, The Plant Cell Online.

[60]  M. Aida,et al.  Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes. , 1999, Development.

[61]  J. Levin,et al.  The SHOOT MERISTEMLESS gene is required for maintenance of undifferentiated cells in Arabidopsis shoot and floral meristems and acts at a different regulatory level than the meristem genes WUSCHEL and ZWILLE. , 1996, The Plant journal : for cell and molecular biology.

[62]  June I. Medford,et al.  A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis , 1996, Nature.

[63]  G. Coleman,et al.  In vitro shoot regeneration of Populus deltoides: effect of cytokinin and genotype , 1989, Plant Cell Reports.

[64]  Jane M. Horgan,et al.  Survey Design and Analysis. , 1987 .

[65]  Karin Rothschild,et al.  Survey Design And Analysis , 2016 .

[66]  Hai Huang,et al.  Genetic and epigenetic controls of plant regeneration. , 2014, Current topics in developmental biology.

[67]  C. Miller,et al.  Chemical regulation of growth and organ formation in plant tissues cultured in vitro. , 1957, Symposia of the Society for Experimental Biology.