Topical perspective on massive threading and parallelism.
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[1] David A. Bader,et al. SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks , 2008, 2008 IEEE International Symposium on Parallel and Distributed Processing.
[2] Tomas Svensson,et al. Parallel computing with graphics processing units for high-speed Monte Carlo simulation of photon migration. , 2008, Journal of biomedical optics.
[3] Peter J. Stuckey,et al. Fast and accurate protein substructure searching with simulated annealing and GPUs , 2010, BMC Bioinformatics.
[4] Bertil Schmidt,et al. Bioinformatics: High Performance Parallel Computer Architectures , 2010 .
[5] David A. Bader,et al. Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2 , 2006, 2006 International Conference on Parallel Processing (ICPP'06).
[6] Pradeep Dubey,et al. Debunking the 100X GPU vs. CPU myth: an evaluation of throughput computing on CPU and GPU , 2010, ISCA.
[7] Wen-mei W. Hwu,et al. MCUDA: An Efficient Implementation of CUDA Kernels for Multi-core CPUs , 2008, LCPC.
[8] M. Januszewski,et al. Accelerating numerical solution of stochastic differential equations with CUDA , 2009, Comput. Phys. Commun..
[9] Sadaf R. Alam,et al. Towards microsecond biological molecular dynamics simulations on hybrid processors , 2010, 2010 International Conference on High Performance Computing & Simulation.
[10] Jean-François Méhaut,et al. Density functional theory calculation on many-cores hybrid central processing unit-graphic processing unit architectures. , 2009, The Journal of chemical physics.
[11] Klaus Schulten,et al. GPU acceleration of cutoff pair potentials for molecular modeling applications , 2008, CF '08.
[12] Dionisios G. Vlachos,et al. Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs , 2010, 2010 IEEE International Symposium on Parallel & Distributed Processing (IPDPS).
[13] Todd J. Martinez,et al. Graphical Processing Units for Quantum Chemistry , 2008, Computing in Science & Engineering.
[14] Klaus Schulten,et al. GPU-accelerated molecular modeling coming of age. , 2010, Journal of molecular graphics & modelling.
[15] Vijay S. Pande,et al. SIML: A Fast SIMD Algorithm for Calculating LINGO Chemical Similarities on GPUs and CPUs , 2010, J. Chem. Inf. Model..
[16] Lorenzo Dematté,et al. GPU computing for systems biology , 2010, Briefings Bioinform..
[17] Hua Zhou,et al. Graphics Processing Units and High-Dimensional Optimization. , 2010, Statistical science : a review journal of the Institute of Mathematical Statistics.
[18] Ivan S Ufimtsev,et al. Quantum Chemistry on Graphical Processing Units. 2. Direct Self-Consistent-Field Implementation. , 2009, Journal of chemical theory and computation.
[19] Wen-mei W. Hwu,et al. GPU computing gems , 2011 .
[20] Akila Gothandaraman,et al. Comparing Hardware Accelerators in Scientific Applications: A Case Study , 2011, IEEE Transactions on Parallel and Distributed Systems.
[21] Ivan S Ufimtsev,et al. Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation. , 2008, Journal of chemical theory and computation.
[22] Vijay S. Pande,et al. Efficient nonbonded interactions for molecular dynamics on a graphics processing unit , 2010, J. Comput. Chem..
[23] Mike Murphy,et al. Efficient compilation of fine-grained SPMD-threaded programs for multicore CPUs , 2010, CGO '10.
[24] Zsófia Szalay,et al. Fast calculation of DNMR spectra on CUDA‐enabled graphics card , 2011, J. Comput. Chem..
[25] Qing Nie,et al. Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms , 2010, BMC Systems Biology.
[26] Asim Munawar,et al. A Bayesian Optimization Algorithm for De Novo ligand design based docking running over GPU , 2010, IEEE Congress on Evolutionary Computation.
[27] R.H. Dennard,et al. Design Of Ion-implanted MOSFET's with Very Small Physical Dimensions , 1974, Proceedings of the IEEE.
[28] S. Bianchi,et al. Real-time optical micro-manipulation using optimized holograms generated on the GPU , 2009, Comput. Phys. Commun..
[29] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[30] John E. Stone,et al. Long time-scale simulations of in vivo diffusion using GPU hardware , 2009, 2009 IEEE International Symposium on Parallel & Distributed Processing.
[31] David A. Bader,et al. Massive Social Network Analysis: Mining Twitter for Social Good , 2010, 2010 39th International Conference on Parallel Processing.
[32] Roger D. Chamberlain,et al. Accelerating HMMER on GPUs by implementing hybrid data and task parallelism , 2010, BCB '10.
[33] David A Boas,et al. Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units. , 2009, Optics express.
[34] Christian Windischberger,et al. Toward discovery science of human brain function , 2010, Proceedings of the National Academy of Sciences.
[35] Philip Saponaro,et al. Improving numerical reproducibility and stability in large-scale numerical simulations on GPUs , 2010, 2010 IEEE International Symposium on Parallel & Distributed Processing (IPDPS).
[36] Joshua A. Anderson,et al. General purpose molecular dynamics simulations fully implemented on graphics processing units , 2008, J. Comput. Phys..
[37] Ju Lu,et al. Semi-Automated Reconstruction of Neural Processes from Large Numbers of Fluorescence Images , 2009, PloS one.
[38] Cliburn Chan,et al. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures , 2010, Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America.
[39] Koji Yasuda,et al. Accelerating Density Functional Calculations with Graphics Processing Unit. , 2008, Journal of chemical theory and computation.
[40] Ivan S Ufimtsev,et al. Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics. , 2009, Journal of chemical theory and computation.
[41] Laxmikant V. Kale,et al. NAMD2: Greater Scalability for Parallel Molecular Dynamics , 1999 .
[42] Keir Fraser,et al. Concurrent programming without locks , 2007, TOCS.
[43] Robert H. Dennard,et al. A 30 Year Retrospective on Dennard's MOSFET Scaling Paper , 2007 .
[44] Klaus Schulten,et al. Immersive Molecular Visualization and Interactive Modeling with Commodity Hardware , 2010, ISVC.
[45] Markus Hadwiger,et al. Ssecrett and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Data Sets , 2010, IEEE Computer Graphics and Applications.
[46] Wu-chun Feng,et al. Accelerating electrostatic surface potential calculation with multi-scale approximation on graphics processing units. , 2010, Journal of molecular graphics & modelling.