Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation.
暂无分享,去创建一个
[1] K. Venkataraman,et al. Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition. , 2005, Genes & development.
[2] Bin Tian,et al. Alternative polyadenylation of cyclooxygenase-2 , 2005, Nucleic acids research.
[3] Bin Tian,et al. A large-scale analysis of mRNA polyadenylation of human and mouse genes , 2005, Nucleic acids research.
[4] Michael Recce,et al. PolyA_DB: a database for mammalian mRNA polyadenylation , 2004, Nucleic Acids Res..
[5] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[6] Chunxiao Wu,et al. Secondary Structure as a Functional Feature in the Downstream Region of Mammalian Polyadenylation Signals , 2004, Molecular and Cellular Biology.
[7] W. Keller,et al. Human Fip1 is a subunit of CPSF that binds to U‐rich RNA elements and stimulates poly(A) polymerase , 2004, The EMBO journal.
[8] J. Graber,et al. Variations in yeast 3'-processing cis-elements correlate with transcript stability. , 2003, Trends in genetics : TIG.
[9] Gabriele Varani,et al. Recognition of GU‐rich polyadenylation regulatory elements by human CstF‐64 protein , 2003, The EMBO journal.
[10] D. Hovorun,et al. Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures. , 2003, Nucleic acids research.
[11] D. Gautheret,et al. Sequence determinants in human polyadenylation site selection , 2003, BMC Genomics.
[12] Jeffrey Wilusz,et al. Upstream Elements Present in the 3′-Untranslated Region of Collagen Genes Influence the Processing Efficiency of Overlapping Polyadenylation Signals* , 2002, The Journal of Biological Chemistry.
[13] Jeffrey Wilusz,et al. Downstream sequence elements with different affinities for the hnRNP H/H' protein influence the processing efficiency of mammalian polyadenylation signals. , 2002, Nucleic acids research.
[14] M. Edmonds,et al. A history of poly A sequences: from formation to factors to function. , 2002, Progress in nucleic acid research and molecular biology.
[15] Tala Bakheet,et al. ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins , 2001, Nucleic Acids Res..
[16] N. Proudfoot,et al. Transcriptional termination and coupled polyadenylation in vitro , 2000, The EMBO journal.
[17] D. Gautheret,et al. Patterns of variant polyadenylation signal usage in human genes. , 2000, Genome research.
[18] C R Cantor,et al. In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[19] Jing Zhao,et al. Formation of mRNA 3′ Ends in Eukaryotes: Mechanism, Regulation, and Interrelationships with Other Steps in mRNA Synthesis , 1999, Microbiology and Molecular Biology Reviews.
[20] Jack E. Tabaska,et al. Detection of polyadenylation signals in human DNA sequences. , 1999, Gene.
[21] J. Manley,et al. Mechanism and regulation of mRNA polyadenylation. , 1997, Genes & development.
[22] M. Hentze,et al. Starting at the Beginning, Middle, and End: Translation Initiation in Eukaryotes , 1997, Cell.
[23] M. Wickens,et al. Life and death in the cytoplasm: messages from the 3' end. , 1997, Current opinion in genetics & development.
[24] Sophie Schbath,et al. An Efficient Statistic to Detect Over-and Under-Represented Words in DNA Sequences , 1997, J. Comput. Biol..
[25] B. Graveley,et al. RNA structure is a critical determinant of poly(A) site recognition by cleavage and polyadenylation specificity factor , 1996, Molecular and cellular biology.
[26] S. Peltz,et al. Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells. , 1996, Annual review of biochemistry.
[27] C. Y. Chen,et al. AU-rich elements: characterization and importance in mRNA degradation. , 1995, Trends in biochemical sciences.
[28] M. Wollerton,et al. Upstream sequence elements enhance poly(A) site efficiency of the C2 complement gene and are phylogenetically conserved. , 1995, The EMBO journal.
[29] J. Wilusz,et al. Cleavage site determinants in the mammalian polyadenylation signal. , 1995, Nucleic acids research.
[30] J. Wilusz,et al. The G-rich auxiliary downstream element has distinct sequence and position requirements and mediates efficient 3' end pre-mRNA processing through a trans-acting factor. , 1995, Nucleic acids research.
[31] T. Shenk,et al. The 64-kilodalton subunit of the CstF polyadenylation factor binds to pre-mRNAs downstream of the cleavage site and influences cleavage site location , 1994, Molecular and cellular biology.
[32] Fan Chen,et al. Sequence and position requirements for uridylate-rich downstream elements of polyadenylation signals , 1994, Nucleic Acids Res..
[33] G. Edwalds-Gilbert,et al. 3' RNA processing efficiency plays a primary role in generating termination-competent RNA polymerase II elongation complexes , 1993, Molecular and cellular biology.
[34] J. Alwine,et al. Elements upstream of the AAUAAA within the human immunodeficiency virus polyadenylation signal are required for efficient polyadenylation in vitro , 1992, Molecular and cellular biology.
[35] B. Cullen,et al. Efficient polyadenylation within the human immunodeficiency virus type 1 long terminal repeat requires flanking U3-specific sequences , 1991, Journal of virology.
[36] J. Alwine,et al. The human immunodeficiency virus type 1 polyadenylylation signal: a 3' long terminal repeat element upstream of the AAUAAA necessary for efficient polyadenylylation. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[37] T. D. Schneider,et al. Sequence logos: a new way to display consensus sequences. , 1990, Nucleic acids research.
[38] J. Alwine,et al. Efficiency of utilization of the simian virus 40 late polyadenylation site: effects of upstream sequences , 1989, Molecular and cellular biology.
[39] N. Proudfoot,et al. Definition of an efficient synthetic poly(A) site. , 1989, Genes & development.
[40] T. Shenk,et al. A 64 kd nuclear protein binds to RNA segments that include the AAUAAA polyadenylation motif , 1988, Cell.
[41] J. Manley,et al. Requirements for accurate and efficient mRNA 3' end cleavage and polyadenylation of a simian virus 40 early pre-RNA in vitro , 1987, Molecular and cellular biology.
[42] R. Amann,et al. Predictive Identification of Exonic Splicing Enhancers in Human Genes , 2022 .