Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text

[1]  Funda Meric-Bernstam,et al.  The right drugs at the right time for the right patient: the MD Anderson precision oncology decision support platform. , 2015, Drug discovery today.

[2]  Thomas C. Rindflesch,et al.  Predicting High-Throughput Screening Results With Scalable Literature-Based Discovery Methods , 2014, CPT: pharmacometrics & systems pharmacology.

[3]  Hua Xu,et al.  Automated identification of molecular effects of drugs (AIMED) , 2016, J. Am. Medical Informatics Assoc..

[4]  Trevor Cohen,et al.  Reasoning with vectors: A continuous model for fast robust inference , 2015, Log. J. IGPL.

[5]  Trevor Cohen,et al.  Embedding of semantic predications , 2017, J. Biomed. Informatics.

[6]  Yaoyun Zhang,et al.  A Study of Neural Word Embeddings for Named Entity Recognition in Clinical Text , 2015, AMIA.

[7]  Hua Xu,et al.  Identifying Plausible Adverse Drug Reactions Using Knowledge Extracted from the Literature , 2014, AMIA.

[8]  Russ B. Altman,et al.  Learning the Structure of Biomedical Relationships from Unstructured Text , 2015, PLoS Comput. Biol..

[9]  Peter Davies,et al.  Discovering discovery patterns with predication-based Semantic Indexing , 2012, J. Biomed. Informatics.

[10]  Daniel L. Rubin,et al.  Probabilistic Prognostic Estimates of Survival in Metastatic Cancer Patients (PPES-Met) Utilizing Free-Text Clinical Narratives , 2018, Scientific Reports.

[11]  Trevor Cohen,et al.  Reflective Random Indexing and indirect inference: A scalable method for discovery of implicit connections , 2010, J. Biomed. Informatics.

[12]  Zhiyong Lu,et al.  PubTator: a web-based text mining tool for assisting biocuration , 2013, Nucleic Acids Res..

[13]  Yaoyun Zhang,et al.  Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes , 2018, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

[14]  Trevor Cohen,et al.  Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space , 2009, AMIA.

[15]  Trevor Cohen,et al.  Empirical distributional semantics: Methods and biomedical applications , 2009, J. Biomed. Informatics.

[16]  David Sontag,et al.  Learning Low-Dimensional Representations of Medical Concepts , 2016, CRI.

[17]  Abeed Sarker,et al.  Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features , 2015, J. Am. Medical Informatics Assoc..

[18]  Russ B. Altman,et al.  A global network of biomedical relationships derived from text , 2018, Bioinform..