Outcome of a workshop on archiving structural models of biological macromolecules.

[1]  Liam J. McGuffin,et al.  Improving sequence-based fold recognition by using 3D model quality assessment , 2005, Bioinform..

[2]  M. Baker,et al.  Electron cryomicroscopy of biological machines at subnanometer resolution. , 2005, Structure.

[3]  Ceslovas Venclovas,et al.  Progress over the first decade of CASP experiments , 2005, Proteins.

[4]  Frank Alber,et al.  Structure Determination of Macromolecular Complexes by Experiment and Computation , 2008 .

[5]  Helen R. Saibil,et al.  Structural Basis of Pore Formation by the Bacterial Toxin Pneumolysin , 2005, Cell.

[6]  Marc A. Martí-Renom,et al.  DBAli: a database of protein structure alignments , 2001, Bioinform..

[7]  Les Carr,et al.  An E-Science Environment for Service Crystallography-from Submission to Dissemination , 2006, J. Chem. Inf. Model..

[8]  A. Sali,et al.  Protein Structure Prediction and Structural Genomics , 2001, Science.

[9]  Shoaib Sufi,et al.  The CLRC Scientific Metadata Model - Version 1 , 2002 .

[10]  M J Sippl,et al.  Knowledge-based potentials for proteins. , 1995, Current opinion in structural biology.

[11]  M. S. Chapman,et al.  Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement , 2003, Cell.

[12]  Arne Elofsson,et al.  Automatic consensus‐based fold recognition using Pcons, ProQ, and Pmodeller , 2003, Proteins.

[13]  M. Sippl.  Recognition of errors in three‐dimensional structures of proteins , 1993, Proteins.

[14]  Marc A. Martí-Renom,et al.  MODBASE: a database of annotated comparative protein structure models and associated resources , 2005, Nucleic Acids Res..

[15]  B. Honig,et al.  Protein structure prediction: inroads to biology. , 2005, Molecular cell.

[16]  D. Eisenberg,et al.  Assessment of protein models with three-dimensional profiles , 1992, Nature.

[17]  G J Williams,et al.  The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.

[18]  S. Harrison,et al.  Lipid–protein interactions in double-layered two-dimensional AQP0 crystals , 2005, Nature.

[19]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[20]  R. Stevens,et al.  Global Efforts in Structural Genomics , 2001, Science.

[21]  Torsten Schwede,et al.  The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models , 2004, Nucleic Acids Res..

[22]  Anne E. Trefethen,et al.  Cyberinfrastructure for e-Science , 2005, Science.

[23]  J. Frank.  Single-particle imaging of macromolecules by cryo-electron microscopy. , 2002, Annual review of biophysics and biomolecular structure.

[24]  Adam Godzik,et al.  Fold recognition methods. , 2005, Methods of biochemical analysis.

[25]  Narayanan Eswar,et al.  Comparative Protein Structure Modeling 831 831 , 2005 .

[26]  Frances M. G. Pearl,et al.  The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis , 2004, Nucleic Acids Res..

[27]  Burkhard Rost,et al.  Prediction in 1D: secondary structure, membrane helices, and accessibility. , 2003, Methods of biochemical analysis.

[28]  Yaoqi Zhou,et al.  SPARKS 2 and SP3 servers in CASP6 , 2005, Proteins.

[29]  Brian K. Shoichet,et al.  Virtual screening of chemical libraries , 2004, Nature.

[30]  Richard Henderson,et al.  Molecular mechanism of vectorial proton translocation by bacteriorhodopsin , 2000, Nature.

[31]  A. Elofsson,et al.  Can correct protein models be identified? , 2003, Protein science : a publication of the Protein Society.

[32]  Haruki Nakamura,et al.  Announcing the worldwide Protein Data Bank , 2003, Nature Structural Biology.

[33]  Torsten Schwede,et al.  The SWISS-MODEL Repository: new features and functionalities , 2005, Nucleic Acids Res..

[34]  Francisco Melo,et al.  ANOLEA: A WWW Server to Assess Protein Structures , 1997, ISMB.

[35]  A. Sali,et al.  Comparative protein structure modeling of genes and genomes. , 2000, Annual review of biophysics and biomolecular structure.

[36]  M. Baker,et al.  Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions , 2003, Nature Structural Biology.

[37]  O. Schueler‐Furman,et al.  Progress in Modeling of Protein Structures and Interactions , 2005, Science.

[38]  Matthew L. Baker,et al.  Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus , 2001, Nature Structural Biology.

[39]  G J Williams,et al.  The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.

[40]  C. Sander,et al.  Errors in protein structures , 1996, Nature.

[41]  Cathy H. Wu,et al.  The Universal Protein Resource (UniProt) , 2006, Nucleic Acids Research.

[42]  Burkhard Rost,et al.  The PredictProtein server , 2003, Nucleic Acids Res..

[43]  Wei Zhang,et al.  Structure of Dengue Virus Implications for Flavivirus Organization, Maturation, and Fusion , 2002, Cell.

[44]  Leszek Rychlewski,et al.  LiveBench‐8: The large‐scale, continuous assessment of automated protein structure prediction , 2005, Protein science : a publication of the Protein Society.

[45]  J. Frank,et al.  Structure of the E. coli protein-conducting channel bound to a translating ribosome , 2006, Nature.

[46]  Kerstin Kleese van Dam,et al.  Data Management with the CCLRC Data Portal , 2004, PDPTA.

[47]  M. Baker,et al.  Refinement of protein structures by iterative comparative modeling and CryoEM density fitting. , 2006, Journal of molecular biology.

[48]  Andrej Sali,et al.  Combining electron microscopy and comparative protein structure modeling. , 2005, Current opinion in structural biology.

[49]  Alasdair C. Steven,et al.  Dynamics of herpes simplex virus capsid maturation visualized by time-lapse cryo-electron microscopy , 2003, Nature Structural Biology.

[50]  Arne Elofsson,et al.  3D-Jury: A Simple Approach to Improve Protein Structure Predictions , 2003, Bioinform..

[51]  Florence Tama,et al.  Structure of the E. coli protein-conducting channel bound to a translating ribosome , 2005, Nature.

[52]  Marc A. Martí-Renom,et al.  EVA: evaluation of protein structure prediction servers , 2003, Nucleic Acids Res..

[53]  S. Harrison,et al.  Lipid–protein interactions in double-layered two-dimensional AQP0 crystals , 2005 .

[54]  Tim J. P. Hubbard,et al.  SCOP database in 2004: refinements integrate structure and sequence family data , 2004, Nucleic Acids Res..