Evidence for multiple navigational sensory capabilities of Chinook salmon

To study the complex coastal migrations patterns exhibited by juvenile Columbia River Chinook salmon as they enter and move through the marine environment, we created an individual-based model in a coupled Eulerian-Lagrangian framework. We modeled 5 distinct migration strategies and compared the resulting spatial distributions to catch data collected dur- ing May and June in 3 years. Two strategies produced fish distributions similar to those observed in May, but only one also produced the observed June distributions. In both strategies, salmon dis- tinguish north from south (i.e. they have a compass sense), and they control their position relative to particular landmarks, such as the river mouth. With these 2 abilities, we posit that salmon follow spatially explicit behavior rules that prevent entrapment in strong southward currents and advec- tion offshore. Additionally, the consistent spatio-temporal distributions observed among years suggest that salmon use a clock sense to adjust their swim speed, within and among years, in response to progress along their migration.

[1]  Jiayi Pan,et al.  River Influences on Shelf Ecosystems: Introduction and synthesis , 2010 .

[2]  R P Wilson,et al.  Turn costs change the value of animal search paths. , 2013, Ecology letters.

[3]  Orientation of Chum Salmon (Oncorhynchus keta) After Internal and External Magnetic Field Alteration , 1983 .

[4]  James J. Anderson,et al.  Modeling climate change impacts on phenology and population dynamics of migratory marine species , 2013 .

[5]  S. Sogard Size-selective mortality in the juvenile stage of teleost fishes : A review , 1997 .

[6]  K. A. Mork,et al.  Modelling the migration of post-smolt Atlantic salmon (Salmo salar) in the Northeast Atlantic , 2012 .

[7]  Salmon ocean migration models suggest a variety of population-specific strategies , 2014, Reviews in Fish Biology and Fisheries.

[8]  M. Healey Timing and relative intensity of size-selective mortality of juvenile chum salmon (Oncorhynchus keta) during early sea life , 1982 .

[9]  L. Weitkamp,et al.  Seasonal and interannual variation in juvenile salmonids and associated fish assemblage in open waters of the lower Columbia River estuary , 2012 .

[10]  W. Peterson,et al.  Ocean distribution and habitat associations of yearling coho (Oncorhynchus kisutch) and Chinook (O. tshawytscha) salmon in the northern California Current , 2010 .

[11]  Hongsheng Bi,et al.  Spatial variations in the distribution of yearling spring Chinook salmon off Washington and Oregon using COZIGAM analysis , 2012 .

[12]  J. Kirschvink,et al.  Production of single-domain magnetite throughout life by sockeye salmon, Oncorhynchus nerka. , 1988, The Journal of experimental biology.

[13]  F. Papi Navigation of marine, freshwater and coastal animals: concepts and current problems , 2006 .

[14]  A. D. Cross,et al.  Evidence for Size‐Selective Mortality after the First Summer of Ocean Growth by Pink Salmon , 2005 .

[15]  Ruoying He,et al.  Tracking the long-distance dispersal of marine organisms: sensitivity to ocean model resolution , 2013, Journal of The Royal Society Interface.

[16]  Cheryl A. Morgan,et al.  Species composition and community structure of pelagic nekton off Oregon and Washington under variable oceanographic conditions , 2005 .

[17]  António M. Baptista,et al.  A cross-scale model for 3D baroclinic circulation in estuary–plume–shelf systems: II. Application to the Columbia River , 2005 .

[18]  Dittman,et al.  Homing in Pacific salmon: mechanisms and ecological basis , 1996, The Journal of experimental biology.

[19]  K. Rose,et al.  A review of the NEMURO and NEMURO.FISH models and their application to marine ecosystem investigations , 2011 .

[20]  D. Welch,et al.  Life History and Seasonal Stock-Specific Ocean Migration of Juvenile Chinook Salmon , 2011 .

[21]  Thomas Alerstam,et al.  Convergent patterns of long-distance nocturnal migration in noctuid moths and passerine birds , 2011, Proceedings of the Royal Society B: Biological Sciences.

[22]  Thomas P. Quinn,et al.  Pacific Salmon (Oncorhynchus) Migrations: Orientation versus Random Movement , 1984 .

[23]  J. Arendt,et al.  Adaptive Intrinsic Growth Rates: An Integration Across Taxa , 1997, The Quarterly Review of Biology.

[24]  R. Waples,et al.  LIFE-HISTORY DIVERGENCE IN CHINOOK SALMON: HISTORIC CONTINGENCY AND PARALLEL EVOLUTION , 2004 .

[25]  António M. Baptista,et al.  SELFE: A semi-implicit Eulerian–Lagrangian finite-element model for cross-scale ocean circulation , 2008 .

[26]  Richard J. Beamish,et al.  A critical size and period hypothesis to explain natural regulation of salmon abundance and the linkage to climate and climate change , 2001 .

[27]  L. Weitkamp Marine Distributions of Chinook Salmon from the West Coast of North America Determined by Coded Wire Tag Recoveries , 2010 .

[28]  N. Banas,et al.  A model study of tide- and wind-induced mixing in the Columbia River Estuary and plume , 2009 .

[29]  B. Hickey California and Alaska Currents , 2001 .

[30]  J. Gareth Polhill,et al.  The ODD protocol: A review and first update , 2010, Ecological Modelling.

[31]  J. Artieda,et al.  Time, internal clocks, and movement , 1996 .

[32]  James J. Anderson,et al.  An investigation of the geomagnetic imprinting hypothesis for salmon , 2012 .

[33]  Hongsheng Bi,et al.  Modeling the pelagic habitat of salmon off the Pacific Northwest (USA) coast using logistic regression , 2007 .

[34]  D. Booker,et al.  Modelling the trajectories of migrating Atlantic salmon (Salmo salar) , 2008 .

[35]  Birgit Müller,et al.  A standard protocol for describing individual-based and agent-based models , 2006 .

[36]  C. Groot On the orientation of young sockeye salmon (Oncorhynchus nerka) during their seaward migration out of lakes , 1965 .

[37]  B. Finstad,et al.  A critical life stage of the Atlantic salmon Salmo salar: behaviour and survival during the smolt and initial post-smolt migration. , 2012, Journal of fish biology.

[38]  Nathan F. Putman,et al.  Magnetic maps in animals: nature's GPS , 2007, Journal of Experimental Biology.

[39]  J. BurkeBrian,et al.  Environmental and geospatial factors drive juvenile Chinook salmon distribution during early ocean migration , 2013 .

[40]  E. L. Brannon,et al.  The use of celestial and magnetic cues by orienting sockeye salmon smolts , 1982, Journal of comparative physiology.

[41]  G. L. Lacroix,et al.  Migratory behaviour of post-smolt Atlantic salmon during initial stages of seaward migration , 1996 .

[42]  Barbara M. Hickey,et al.  A bi-directional river plume: The Columbia in summer , 2005 .

[43]  Elizabeth W. North,et al.  Manual of recommended practices for modelling physical – biological interactions during fish early life , 2009 .

[44]  Dr. Roswitha Wiltschko,et al.  Magnetic Orientation in Animals , 1995, Zoophysiology.

[45]  A. Hobday,et al.  Influence of upwelling on movement of southern bluefin tuna (Thunnus maccoyii) in the Great Australian Bight , 2007 .

[46]  D. M. Ware,et al.  Bioenergetics of Pelagic Fish: Theoretical Change in Swimming Speed and Ration with Body Size , 1978 .

[47]  E. L. Brannon,et al.  Magnetic field detection in sockeye salmon , 1981 .

[48]  A. D. Cross,et al.  Interannual Variability in Early Marine Growth, Size-Selective Mortality, and Marine Survival for Prince William Sound Pink Salmon , 2009 .

[49]  T. Quinn Evidence for celestial and magnetic compass orientation in lake migrating sockeye salmon fry , 1980, Journal of comparative physiology.

[50]  Thomas P. Quinn,et al.  Evidence for Geomagnetic Imprinting as a Homing Mechanism in Pacific Salmon , 2013, Current Biology.

[51]  António M. Baptista,et al.  Seasonal and interannual variability of the Columbia River plume: A perspective enabled by multiyear simulation databases , 2010 .

[52]  T. Quinn Models of Pacific salmon orientation and navigation on the open ocean , 1991 .

[53]  A. Hartt Early oceanic migrations and growth of juvenile Pacific salmon and steelhead trout , 1986 .

[54]  J. Kirschvink,et al.  Chains of single-domain magnetite particles in chinook salmon,Oncorhynchus tshawytscha , 1985, Journal of Comparative Physiology A.

[55]  Jay Willis,et al.  Modelling swimming aquatic animals in hydrodynamic models , 2011 .

[56]  D. Siegel,et al.  Model sensitivity and robustness in the estimation of larval transport: A study of particle tracking parameters , 2013 .

[57]  Jessica A. Miller,et al.  When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon , 2012 .

[58]  Kevin D. Friedland,et al.  Open-ocean orientation and return migration routes of chum salmon based on temperature data from data storage tags , 2001 .

[59]  E. Machu,et al.  Modelling sardine and anchovy ichthyoplankton transport in the Canary Current System , 2008 .

[60]  Cara Wilson,et al.  Persistent habitat use by Chinook salmon Oncorhynchus tshawytscha in the coastal ocean , 2005 .

[61]  M. Meekan,et al.  Annual variation in size-selective mortality of Atlantic salmon (Salmo salar) fry , 2001 .

[62]  Pierre Petitgas,et al.  Indices for capturing spatial patterns and their evolution in time, with application to European hake (Merluccius merluccius) in the Bay of Biscay , 2007 .

[63]  John C. Montgomery,et al.  Structure and function of the vertebrate magnetic sense , 1997, Nature.

[64]  Douglas M. Marsh,et al.  The influence of the Columbia River plume on the survival of steelhead (Oncorhynchus mykiss) and Chinook salmon (Oncorhynchus tshawytscha): a numerical exploration , 2010 .

[65]  E. L. Brannon,et al.  Ocean Ecology of North Pacific Salmonids , 1993 .

[66]  R. Brodeur,et al.  The vertical distribution of juvenile salmon (Oncorhynchus spp.) and associated fishes in the Columbia River plume , 2004 .

[67]  Edzer J. Pebesma,et al.  Applied Spatial Data Analysis with R - Second Edition , 2008, Use R!.

[68]  David Maier,et al.  Scientific Exploration in the Era of Ocean Observatories , 2008, Computing in Science & Engineering.