An enzyme-aided amplification strategy for sensitive detection of DNA utilizing graphene oxide (GO) as a fluorescence quencher.

A facile, sensitive and rapid method has been developed for detection of disease-related DNA based on lambda exonuclease-aided signal amplification by utilizing graphene oxide (GO) as a fluorescence quencher. The fluorescence of the carboxyfluorescein-labeled DNA probe (F-DNA) was sharply quenched due to the electron or energy transfer between the fluorescence dye and GO. While in the presence of target DNA, the formation of a DNA hybrid released F-DNA from the surface of GO, leading to a fluorescence recovery. Then, the fluorescence enhancement was further amplified by using lambda exonuclease (λexo) to liberate target DNA for cyclic hybridization. Fluorescence polarization and gel electrophoresis further verified the reliability of the principle. Disease-related DNA can be sensitively detected based on the enzyme-aided amplification strategy. More importantly, single-base mismatched DNA can be effectively discriminated from complementary target DNA and random DNA. Therefore, it offered a universal, simple, sensitive and specific method for detection of disease-related genes.

[1]  Wei Xu,et al.  Ultrasensitive and selective colorimetric DNA detection by nicking endonuclease assisted nanoparticle amplification. , 2009, Angewandte Chemie.

[2]  A. Fire,et al.  Rolling replication of short DNA circles. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[3]  J. W. Little An exonuclease induced by bacteriophage lambda. II. Nature of the enzymatic reaction. , 1967, The Journal of biological chemistry.

[4]  Chengde Mao,et al.  Cascade Signal Amplification for DNA Detection , 2006, Chembiochem : a European journal of chemical biology.

[5]  Longhua Tang,et al.  Duplex DNA/Graphene Oxide Biointerface: From Fundamental Understanding to Specific Enzymatic Effects , 2012 .

[6]  R. Corn,et al.  Enzymatically amplified surface plasmon resonance imaging detection of DNA by exonuclease III digestion of DNA microarrays. , 2005, Analytical chemistry.

[7]  J. Kwagh,et al.  Characterization of the interaction of lambda exonuclease with the ends of DNA. , 1999, Nucleic acids research.

[8]  Jian-hui Jiang,et al.  Graphene fluorescence resonance energy transfer aptasensor for the thrombin detection. , 2010, Analytical chemistry.

[9]  K. Plaxco,et al.  Sensitive and selective amplified fluorescence DNA detection based on exonuclease III-aided target recycling. , 2010, Journal of the American Chemical Society.

[10]  M. Zhang,et al.  Ultrasensitive fluorescence polarization DNA detection by target assisted exonuclease III-catalyzed signal amplification. , 2011, Chemical communications.

[11]  W Henke,et al.  Betaine improves the PCR amplification of GC-rich DNA sequences. , 1997, Nucleic acids research.

[12]  F. Perrin Polarisation de la lumière de fluorescence. Vie moyenne des molécules dans l'etat excité , 1926 .

[13]  I. Willner,et al.  Ultrasensitive detection of DNA by the PCR-Induced generation of DNAzymes: the DNAzyme primer approach. , 2006, Chemical communications.

[14]  L. Staudt,et al.  Gene expression physiology and pathophysiology of the immune system. , 2001, Trends in immunology.

[15]  J. Lakowicz Principles of fluorescence spectroscopy , 1983 .

[16]  C. Mirkin,et al.  Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA detection. , 2002, Science.

[17]  Janelle L. Coutts,et al.  A one-step highly sensitive method for DNA detection using dynamic light scattering. , 2008, Journal of the American Chemical Society.

[18]  P. Goodfellow,et al.  DNA microarrays in drug discovery and development , 1999, Nature Genetics.

[19]  Huang-Hao Yang,et al.  A graphene platform for sensing biomolecules. , 2009, Angewandte Chemie.

[20]  E. Peyrin,et al.  Noncompetitive fluorescence polarization aptamer-based assay for small molecule detection. , 2009, Analytical chemistry.

[21]  Weihong Tan,et al.  A versatile graphene-based fluorescence "on/off" switch for multiplex detection of various targets. , 2011, Biosensors & bioelectronics.

[22]  U. Landegren,et al.  Signal amplification of padlock probes by rolling circle replication. , 1998, Nucleic acids research.

[23]  Yi Xiao,et al.  Electrochemical DNA detection via exonuclease and target-catalyzed transformation of surface-bound probes. , 2010, Langmuir : the ACS journal of surfaces and colloids.

[24]  M. Ali,et al.  Rolling circle amplification: applications in nanotechnology and biodetection with functional nucleic acids. , 2008, Angewandte Chemie.

[25]  Shusheng Zhang,et al.  Electrochemical DNA biosensor based on nanoporous gold electrode and multifunctional encoded DNA-Au bio bar codes. , 2008, Analytical chemistry.

[26]  G. Walker,et al.  Temperature and quenching studies of fluorescence polarization detection of DNA hybridization. , 1997, Analytical chemistry.

[27]  F. Barany Genetic disease detection and DNA amplification using cloned thermostable ligase. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[28]  Chunhai Fan,et al.  A Graphene Nanoprobe for Rapid, Sensitive, and Multicolor Fluorescent DNA Analysis , 2010 .

[29]  Hao Li,et al.  Exonuclease III-based and gold nanoparticle-assisted DNA detection with dual signal amplification. , 2012, Biosensors & bioelectronics.

[30]  S. Perrin,et al.  Analysis of cytokine mRNA and DNA: detection and quantitation by competitive polymerase chain reaction. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[31]  Wendy I. Wilson,et al.  Ligase chain reaction (LCR)--overview and applications. , 1994, PCR methods and applications.