A structural and biochemical comparison of Ribonuclease E homologues from pathogenic bacteria highlights species-specific properties

[1]  B. Luisi,et al.  Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E , 2018, Molecular cell.

[2]  Z. Paroo,et al.  Ribonucleases as Drug Targets. , 2018, Trends in pharmacological sciences.

[3]  P. V. Konarev,et al.  ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions , 2017, Journal of applied crystallography.

[4]  Konrad U. Förstner,et al.  In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways , 2017, Molecular cell.

[5]  D. Svergun,et al.  A practical guide to small angle X‐ray scattering (SAXS) of flexible and intrinsically disordered proteins , 2015, FEBS letters.

[6]  A. J. Carpousis,et al.  RNA degradosomes in bacteria and chloroplasts: classification, distribution and evolution of RNase E homologs , 2015, Molecular microbiology.

[7]  C. Fishwick,et al.  The First Small-Molecule Inhibitors of Members of the Ribonuclease E Family , 2015, Scientific Reports.

[8]  K. J. McDowall,et al.  Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli , 2014, Nucleic acids research.

[9]  Brendan F Gilmore,et al.  Clinical relevance of the ESKAPE pathogens , 2013, Expert review of anti-infective therapy.

[10]  Ben F. Luisi,et al.  The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E , 2012, Molecular cell.

[11]  P. Dunman,et al.  RNA decay: a novel therapeutic target in bacteria , 2012, Wiley interdisciplinary reviews. RNA.

[12]  A. J. Carpousis,et al.  A tale of two mRNA degradation pathways mediated by RNase E , 2011, Molecular microbiology.

[13]  L. Liljas,et al.  Temperature-Sensitive Mutants of RNase E in Salmonella enterica , 2011, Journal of bacteriology.

[14]  Jason A. Rosenzweig,et al.  Ribonucleases and bacterial virulence , 2011, Microbial biotechnology.

[15]  M. Malecki,et al.  The critical role of RNA processing and degradation in the control of gene expression. , 2010, FEMS microbiology reviews.

[16]  E. Groisman,et al.  An antisense RNA that governs the expression kinetics of a multifunctional virulence gene , 2010, Molecular microbiology.

[17]  S. Jourdan,et al.  Rapid cleavage of RNA by RNase E in the absence of 5′ monophosphate stimulation , 2009, Molecular microbiology.

[18]  Dmitri I. Svergun,et al.  Electronic Reprint Applied Crystallography Dammif, a Program for Rapid Ab-initio Shape Determination in Small-angle Scattering Applied Crystallography Dammif, a Program for Rapid Ab-initio Shape Determination in Small-angle Scattering , 2022 .

[19]  W. Scott,et al.  The Crystal Structure of the Escherichia coli RNase E Apoprotein and a Mechanism for RNA Degradation , 2008, Structure.

[20]  K. Schesser,et al.  RNase E Regulates the Yersinia Type 3 Secretion System , 2008, Journal of bacteriology.

[21]  V. Kaberdin,et al.  Quaternary structure and biochemical properties of mycobacterial RNase E/G. , 2007, The Biochemical journal.

[22]  Stanley N Cohen,et al.  Retention of Core Catalytic Functions by a Conserved Minimal Ribonuclease E Peptide That Lacks the Domain Required for Tetramer Formation* , 2006, Journal of Biological Chemistry.

[23]  W. Scott,et al.  Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover , 2005, Nature.

[24]  C. Robinson,et al.  "Zn-link": a metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E. , 2005, Biochemistry.

[25]  Conrad C. Huang,et al.  UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..

[26]  Carol V Robinson,et al.  Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E. , 2004, Journal of molecular biology.

[27]  V. Kaberdin,et al.  Determination of the Catalytic Parameters of the N-terminal Half of Escherichia coli Ribonuclease E and the Identification of Critical Functional Groups in RNA Substrates* , 2003, Journal of Biological Chemistry.

[28]  C. Robinson,et al.  Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain. , 2003, Biochemistry.

[29]  Dmitri I. Svergun,et al.  PRIMUS: a Windows PC-based system for small-angle scattering data analysis , 2003 .

[30]  Dmitri I. Svergun,et al.  Uniqueness of ab initio shape determination in small-angle scattering , 2003 .

[31]  Stanley N Cohen,et al.  A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase‐binding domains , 2003, Molecular microbiology.

[32]  G. Mackie.  Ribonuclease E is a 5′-end-dependent endonuclease , 1998, Nature.

[33]  C. Higgins,et al.  Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome. , 1998, Genes & development.

[34]  S. Cohen,et al.  The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site. , 1996, Journal of molecular biology.

[35]  D. Svergun,et al.  CRYSOL : a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates , 1995 .

[36]  Stanley N Cohen,et al.  Site-specific RNase E cleavage of oligonucleotides and inhibition by stem–loops , 1995, Nature.

[37]  S. Cohen,et al.  A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. , 1994, The Journal of biological chemistry.

[38]  S. Cohen,et al.  The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus , 1993, Journal of bacteriology.

[39]  Dmitri I. Svergun,et al.  Determination of the regularization parameter in indirect-transform methods using perceptual criteria , 1992 .

[40]  M. Kuwano,et al.  A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA. , 1979, Journal of molecular biology.

[41]  A. Lassar,et al.  A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA. , 1978, The Journal of biological chemistry.

[42]  B. Luisi,et al.  Endonucleolytic initiation of mRNA decay in Escherichia coli. , 2009, Progress in molecular biology and translational science.