The pathway not taken: understanding 'omics data in the perinatal context.

[1]  Heather C. Wick,et al.  Analysis of Adult Cerebral Cortex and Hippocampus Transcriptomes Reveals Unique Molecular Changes in the Ts1Cje Mouse Model of Down Syndrome , 2015, Brain pathology.

[2]  Lana X. Garmire,et al.  A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer , 2014, PLoS Comput. Biol..

[3]  Heather C. Wick,et al.  Amniotic fluid RNA gene expression profiling provides insights into the phenotype of Turner syndrome , 2014, Human Genetics.

[4]  C. Lowery,et al.  Maternal Pre-Gravid Obesity Changes Gene Expression Profiles Towards Greater Inflammation and Reduced Insulin Sensitivity in Umbilical Cord , 2014, Pediatric Research.

[5]  J. Delabar,et al.  Prenatal treatment of Down syndrome: a reality? , 2014, Current opinion in obstetrics & gynecology.

[6]  Heather C. Wick,et al.  Maternal Obesity Affects Fetal Neurodevelopmental and Metabolic Gene Expression: A Pilot Study , 2014, PloS one.

[7]  Donna K. Slonim,et al.  DFLAT: functional annotation for human development , 2014, BMC Bioinformatics.

[8]  Charles D. Warden,et al.  BD-Func: a streamlined algorithm for predicting activation and inhibition of pathways , 2013, PeerJ.

[9]  M. Werler,et al.  The impact of folic acid intake on the association among diabetes mellitus, obesity, and spina bifida. , 2013, American journal of obstetrics and gynecology.

[10]  Anthony Johnson,et al.  Global gene expression analysis of amniotic fluid cell‐free RNA from recipient twins with twin–twin transfusion syndrome , 2013, Prenatal diagnosis.

[11]  Heather C. Wick,et al.  Global Gene Expression Analysis of Term Amniotic Fluid Cell-Free Fetal RNA , 2013, Obstetrics and gynecology.

[12]  P. Gluckman,et al.  Transcriptome Changes Affecting Hedgehog and Cytokine Signalling in the Umbilical Cord: Implications for Disease Risk , 2012, PloS one.

[13]  Heather C. Wick,et al.  The Amniotic Fluid Transcriptome: A Source of Novel Information About Human Fetal Development , 2012, Obstetrics and gynecology.

[14]  R Brdicka,et al.  Transcriptome alterations in maternal and fetal cells induced by tobacco smoke. , 2011, Placenta.

[15]  D. Bianchi,et al.  Proof of concept study to assess fetal gene expression in amniotic fluid by nanoarray PCR. , 2011, The Journal of molecular diagnostics : JMD.

[16]  Donna K. Slonim,et al.  Transcriptomic analysis of cell-free fetal RNA suggests a specific molecular phenotype in trisomy 18 , 2011, Human Genetics.

[17]  Sooyoung Chung,et al.  Maternal stress retards fetal development in mice with transcriptome-wide impact on gene expression profiles of the limb , 2011, Stress.

[18]  S. Drăghici,et al.  ORIGINAL ARTICLE: The Transcriptome of the Fetal Inflammatory Response Syndrome , 2009, American journal of reproductive immunology.

[19]  Pieter B. T. Neerincx,et al.  Methods for interpreting lists of affected genes obtained in a DNA microarray experiment , 2009, BMC proceedings.

[20]  C. Arce,et al.  Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis , 2009, BMC proceedings.

[21]  Donna K Slonim,et al.  Functional genomic analysis of amniotic fluid cell-free mRNA suggests that oxidative stress is significant in Down syndrome fetuses , 2009, Proceedings of the National Academy of Sciences.

[22]  Y. Pawitan,et al.  Strategies and issues in the detection of pathway enrichment in genome-wide association studies , 2009, Human Genetics.

[23]  Kent L Thornburg,et al.  Effect of in Utero and Early-life Conditions on Adult Health and Disease Epidemiol Ogic a Nd Clinic a L Observations , 2022 .

[24]  Ulrich Mansmann,et al.  Multiple testing on the directed acyclic graph of gene ontology , 2008, Bioinform..

[25]  S. Rodriguez-Zas,et al.  Advancing the understanding of the embryo transcriptome co-regulation using meta-, functional, and gene network analysis tools. , 2008, Reproduction.

[26]  Jill L. Maron,et al.  Gene expression analysis in pregnant women and their infants identifies unique fetal biomarkers that circulate in maternal blood. , 2007, The Journal of clinical investigation.

[27]  D. Tesfaye,et al.  Large-scale transcriptional analysis of bovine embryo biopsies in relation to pregnancy success after transfer to recipients. , 2006, Physiological genomics.

[28]  Roberto Romero,et al.  Inflammation in preterm and term labour and delivery. , 2006, Seminars in fetal & neonatal medicine.

[29]  Paul A Clemons,et al.  The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease , 2006, Science.

[30]  Thomas Lengauer,et al.  Improved scoring of functional groups from gene expression data by decorrelating GO graph structure , 2006, Bioinform..

[31]  Pablo Tamayo,et al.  Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[32]  J. Ordovás,et al.  Global gene expression analysis of the living human fetus using cell-free messenger RNA in amniotic fluid. , 2005, JAMA.

[33]  Jean YH Yang,et al.  Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.

[34]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[35]  G. Shaw,et al.  Spina bifida phenotypes in infants or fetuses of obese mothers. , 2000, Teratology.

[36]  D J Barker,et al.  Fetal origins of coronary heart disease , 1995, BMJ.

[37]  C Osmond,et al.  The relation of small head circumference and thinness at birth to death from cardiovascular disease in adult life. , 1993, BMJ.

[38]  Calculating and Interpreting the p-values for Functions , Pathways and Lists in IPA Overview , 2010 .

[39]  J. Haddow,et al.  Is maternal obesity a risk factor for open neural tube defects? , 1995, American journal of obstetrics and gynecology.