Mapping brain activity at scale with cluster computing
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Takashi Kawashima | Nikita Vladimirov | Jeremy Freeman | Loren L Looger | Misha B Ahrens | Joshua Rosen | Yu Mu | Chao-Tsung Yang | Nicholas J Sofroniew | Davis V Bennett | L. Looger | Jeremy Freeman | N. Vladimirov | T. Kawashima | Yu Mu | N. Sofroniew | Davis Bennett | Joshua Rosen | Chao-Tsung Yang | M. Ahrens
[1] Nicholas I. Fisher,et al. Statistical Analysis of Circular Data , 1993 .
[2] Sam T. Roweis,et al. EM Algorithms for PCA and SPCA , 1997, NIPS.
[3] T. Kanda,et al. Histone–GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells , 1998, Current Biology.
[4] Aapo Hyvärinen,et al. Fast and robust fixed-point algorithms for independent component analysis , 1999, IEEE Trans. Neural Networks.
[5] Stephen L. Johnson,et al. nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate. , 1999, Development.
[6] A M Dale,et al. Optimal experimental design for event‐related fMRI , 1999, Human brain mapping.
[7] Hae-Chul Park,et al. Structural comparison of zebrafish Elav/Hu and their differential expressions during neurogenesis , 2000, Neuroscience Letters.
[8] Karel Svoboda,et al. ScanImage: Flexible software for operating laser scanning microscopes , 2003, Biomedical engineering online.
[9] Sanjay Ghemawat,et al. MapReduce: Simplified Data Processing on Large Clusters , 2004, OSDI.
[10] Kevin L. Briggman,et al. Optical Imaging of Neuronal Populations During Decision-Making , 2005, Science.
[11] C. Niell,et al. Functional Imaging Reveals Rapid Development of Visual Response Properties in the Zebrafish Tectum , 2005, Neuron.
[12] Tomomi Sato,et al. HuC:Kaede, a useful tool to label neural morphologies in networks in vivo , 2006, Genesis.
[13] Akihiro Urasaki,et al. Functional Dissection of the Tol2 Transposable Element Identified the Minimal cis-Sequence and a Highly Repetitive Sequence in the Subterminal Region Essential for Transposition , 2006, Genetics.
[14] S. Fisher,et al. Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish , 2006, Nature Protocols.
[15] Thomas Hofmann,et al. Map-Reduce for Machine Learning on Multicore , 2007 .
[16] M. Fox,et al. Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging , 2007, Nature Reviews Neuroscience.
[17] Byron M. Yu,et al. Techniques for extracting single-trial activity patterns from large-scale neural recordings , 2007, Current Opinion in Neurobiology.
[18] Yuan Yu,et al. Dryad: distributed data-parallel programs from sequential building blocks , 2007, EuroSys '07.
[19] W. M. Keck,et al. Highly Selective Receptive Fields in Mouse Visual Cortex , 2008, The Journal of Neuroscience.
[20] T. Holy,et al. Fast Three-Dimensional Fluorescence Imaging of Activity in Neural Populations by Objective-Coupled Planar Illumination Microscopy , 2008, Neuron.
[21] Eero P. Simoncelli,et al. Spatio-temporal correlations and visual signalling in a complete neuronal population , 2008, Nature.
[22] L. Zon,et al. Transparent adult zebrafish as a tool for in vivo transplantation analysis. , 2008, Cell stem cell.
[23] B. Sakmann,et al. Journal of Neuroscience Methods Automated Three-dimensional Detection and Counting of Neuron Somata , 2022 .
[24] Mark J. Schnitzer,et al. Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data , 2009, Neuron.
[25] Wei Wu,et al. A new look at state-space models for neural data , 2010, Journal of Computational Neuroscience.
[26] Y. Freund,et al. Automatic identification of fluorescently labeled brain cells for rapid functional imaging. , 2010, Journal of neurophysiology.
[27] M. Stryker,et al. Modulation of Visual Responses by Behavioral State in Mouse Visual Cortex , 2010, Neuron.
[28] Hairong Kuang,et al. The Hadoop Distributed File System , 2010, 2010 IEEE 26th Symposium on Mass Storage Systems and Technologies (MSST).
[29] A. Borst,et al. Fly motion vision. , 2010, Annual review of neuroscience.
[30] Eva A Naumann,et al. Monitoring Neural Activity with Bioluminescence during Natural Behavior , 2010, Nature Neuroscience.
[31] Ethan K. Scott,et al. Filtering of Visual Information in the Tectum by an Identified Neural Circuit , 2010, Science.
[32] Benjamin F. Grewe,et al. High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision , 2010, Nature Methods.
[33] Kevin L. Briggman,et al. Wiring specificity in the direction-selectivity circuit of the retina , 2011, Nature.
[34] Arthur W. Wetzel,et al. Network anatomy and in vivo physiology of visual cortical neurons , 2011, Nature.
[35] A. Kinkhabwala,et al. A structural and functional ground plan for neurons in the hindbrain of zebrafish , 2011, Proceedings of the National Academy of Sciences.
[36] A. Cheng,et al. simultaneous two-photon calcium imaging at different depths with spatiotemporal multiplexing , 2011 .
[37] Johann H. Bollmann,et al. Layer-Specific Targeting of Direction-Selective Neurons in the Zebrafish Optic Tectum , 2012, Neuron.
[38] Georg B. Keller,et al. Sensorimotor Mismatch Signals in Primary Visual Cortex of the Behaving Mouse , 2012, Neuron.
[39] Jasper Akerboom,et al. Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging , 2012, The Journal of Neuroscience.
[40] J. Simon Wiegert,et al. Multiple dynamic representations in the motor cortex during sensorimotor learning , 2012, Nature.
[41] Alison S. Walker,et al. Parametric Functional Maps of Visual Inputs to the Tectum , 2012, Neuron.
[42] F. Engert,et al. Direction selectivity in the larval zebrafish tectum is mediated by asymmetric inhibition , 2012, Front. Neural Circuits.
[43] Michael J. Franklin,et al. Resilient Distributed Datasets: A Fault-Tolerant Abstraction for In-Memory Cluster Computing , 2012, NSDI.
[44] Drew N. Robson,et al. Brain-wide neuronal dynamics during motor adaptation in zebrafish , 2012, Nature.
[45] Matthew T. Kaufman,et al. Neural population dynamics during reaching , 2012, Nature.
[46] Philipp J. Keller,et al. Whole-brain functional imaging at cellular resolution using light-sheet microscopy , 2013, Nature Methods.
[47] Chie Satou,et al. Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons , 2013, Development.
[48] Aaron S. Andalman,et al. Wave optics theory and 3-D deconvolution for the light field microscope. , 2013, Optics express.
[49] F. Engert,et al. Two-photon calcium imaging during fictive navigation in virtual environments , 2013, Front. Neural Circuits.
[50] Stefan R. Pulver,et al. Ultra-sensitive fluorescent proteins for imaging neuronal activity , 2013, Nature.
[51] R. Yuste,et al. Instantaneous three-dimensional sensing using spatial light modulator illumination with extended depth of field imaging. , 2013, Optics express.
[52] Paul S. Weiss,et al. The Brain Activity Map , 2013, Science.
[53] Thomas Panier,et al. Fast functional imaging of multiple brain regions in intact zebrafish larvae using Selective Plane Illumination Microscopy , 2013, BMC Neuroscience.
[54] Chie Satou,et al. Hindbrain V2a Neurons in the Excitation of Spinal Locomotor Circuits during Zebrafish Swimming , 2013, Current Biology.
[55] Karel Svoboda,et al. Natural Whisker-Guided Behavior by Head-Fixed Mice in Tactile Virtual Reality , 2014, The Journal of Neuroscience.
[56] E. Boyden,et al. Simultaneous whole-animal 3D-imaging of neuronal activity using light-field microscopy , 2014, Nature Methods.
[57] Aristides B. Arrenberg,et al. Functional Architecture of an Optic Flow-Responsive Area that Drives Horizontal Eye Movements in Zebrafish , 2014, Neuron.
[58] Stephen W. Wilson,et al. Left-Right Asymmetry Is Required for the Habenulae to Respond to Both Visual and Olfactory Stimuli , 2014, Current Biology.
[59] Philipp J. Keller,et al. Light-sheet functional imaging in fictively behaving zebrafish , 2014, Nature Methods.
[60] M. Orger,et al. Whole-Brain Activity Maps Reveal Stereotyped, Distributed Networks for Visuomotor Behavior , 2014, Neuron.