The biology hidden inside residual within‐individual phenotypic variation

Phenotypes vary hierarchically among taxa and populations, among genotypes within populations, among individuals within genotypes, and also within individuals for repeatedly expressed, labile phenotypic traits. This hierarchy produces some fundamental challenges to clearly defining biological phenomena and constructing a consistent explanatory framework. We use a heuristic statistical model to explore two consequences of this hierarchy. First, although the variation existing among individuals within populations has long been of interest to evolutionary biologists, within‐individual variation has been much less emphasized. Within‐individual variance occurs when labile phenotypes (behaviour, physiology, and sometimes morphology) exhibit phenotypic plasticity or deviate from a norm‐of‐reaction within the same individual. A statistical partitioning of phenotypic variance leads us to explore an array of ideas about residual within‐individual variation. We use this approach to draw attention to additional processes that may influence within‐individual phenotypic variance, including interactions among environmental factors, ecological effects on the fitness consequences of plasticity, and various types of adaptive variance. Second, our framework for investigating variation in phenotypic variance reveals that interactions between levels of the hierarchy form the preconditions for the evolution of all types of plasticity, and we extend this idea to the residual level within individuals, where both adaptive plasticity in residuals and canalization‐like processes (stability) can evolve. With the statistical tools now available to examine heterogeneous residual variance, an array of novel questions linking phenotype to environment can be usefully addressed.

[1]  S. Scheiner,et al.  DEVELOPMENTAL INSTABILITY IS GENETICALLY CORRELATED WITH PHENOTYPIC PLASTICITY, CONSTRAINING HERITABILITY, AND FITNESS , 2013, Evolution; international journal of organic evolution.

[2]  M. Elowitz,et al.  Frequency-modulated nuclear localization bursts coordinate gene regulation , 2008, Nature.

[3]  J. Nelder,et al.  Double hierarchical generalized linear models (with discussion) , 2006 .

[4]  D. M. Hugie The waiting game: a “battle of waits” between predator and prey , 2003 .

[5]  Mollie E. Brooks,et al.  Generalized linear mixed models: a practical guide for ecology and evolution. , 2009, Trends in ecology & evolution.

[6]  T. Caraco,et al.  An empirical demonstration of risk-sensitive foraging preferences , 1980, Animal Behaviour.

[7]  W. Cannon ORGANIZATION FOR PHYSIOLOGICAL HOMEOSTASIS , 1929 .

[8]  S. Shafir Risk-sensitive foraging: the effect of relative variability , 2000 .

[9]  Andrew M. Simons,et al.  Modes of response to environmental change and the elusive empirical evidence for bet hedging , 2011, Proceedings of the Royal Society B: Biological Sciences.

[10]  Magne Aldrin Generalized linear mixed models in R , 2013 .

[11]  T. Piersma,et al.  Phenotypic flexibility and the evolution of organismal design , 2003 .

[12]  J. M. Smith The theory of games and the evolution of animal conflicts. , 1974, Journal of theoretical biology.

[13]  M. Kirkpatrick,et al.  QUANTITATIVE GENETICS AND THE EVOLUTION OF REACTION NORMS , 1992, Evolution; international journal of organic evolution.

[14]  Kate L. Laskowski,et al.  The repeatability of behaviour: a meta-analysis , 2009, Animal Behaviour.

[15]  Lori Wollerman Background noise from a natural chorus alters female discrimination of male calls in a Neotropical frog , 2002, Animal Behaviour.

[16]  S. I. Rothstein Mechanisms of avian egg-recognition: Additional evidence for learned components , 1978, Animal Behaviour.

[17]  A. J. Moore,et al.  INTERACTING PHENOTYPES AND THE EVOLUTIONARY PROCESS: I. DIRECT AND INDIRECT GENETIC EFFECTS OF SOCIAL INTERACTIONS , 1997, Evolution; international journal of organic evolution.

[18]  D. Emlen,et al.  Threshold evolution in exotic populations of a polyphenic beetle , 2002 .

[19]  J. Gillespie Polymorphism in random environments , 1973 .

[20]  D. Wilson,et al.  Costs and limits of phenotypic plasticity. , 1998, Trends in ecology & evolution.

[21]  A. Zahavi,et al.  Constraints on egg discrimination and cuckoo-host co-evolution , 1995, Animal Behaviour.

[22]  Kimberley J. Mathot,et al.  Adaptive strategies for managing uncertainty may explain personality-related differences in behavioural plasticity , 2012 .

[23]  R. Jackson,et al.  Spider flexibly chooses aggressive mimicry signals for different prey by trial and error , 1993 .

[24]  Niels J. Dingemanse,et al.  Between-individual differences in behavioural plasticity within populations: causes and consequences , 2013, Animal Behaviour.

[25]  R. Thomas,et al.  DIFFERENCES BETWEEN POPULATIONS OF REED WARBLERS IN DEFENCES AGAINST BROOD PARASITISM , 2000 .

[26]  M. Elowitz,et al.  Functional roles for noise in genetic circuits , 2010, Nature.

[27]  J. Brommer,et al.  Aggressive Ural owl mothers recruit more offspring , 2009 .

[28]  S. Leibler,et al.  Phenotypic Diversity, Population Growth, and Information in Fluctuating Environments , 2005, Science.

[29]  J. Brock,et al.  Individual Differences in Visual Search: Relationship to Autistic Traits, Discrimination Thresholds, and Speed of Processing , 2011, Perception.

[30]  J. Playfair Infection and Immunity , 1995 .

[31]  M. Briffa Plastic proteans: reduced predictability in the face of predation risk in hermit crabs , 2013, Biology Letters.

[32]  Madhubalan Viswanathan,et al.  Measurement error and research design , 2005 .

[33]  R. Lande,et al.  GENOTYPE‐ENVIRONMENT INTERACTION AND THE EVOLUTION OF PHENOTYPIC PLASTICITY , 1985, Evolution; international journal of organic evolution.

[34]  M. West-Eberhard Developmental plasticity and evolution , 2003 .

[35]  L. R. Schaeffer,et al.  Application of random regression models in animal breeding , 2004 .

[36]  S. Stearns,et al.  FITNESS SENSITIVITY AND THE CANALIZATION OF LIFE‐HISTORY TRAITS , 1994, Evolution; international journal of organic evolution.

[37]  F. Sá The Design of Adaptive Systems: Optimal Parameters for Variation and Selection in Learning and Development , 1996 .

[38]  D. Pfennig,et al.  Phenotypic Plasticity , 2017 .

[39]  R. Woltereck,et al.  Weitere experimentelle untersuchungen über Artänderung, speziell über das Wesen quantitativer Artunterschiede bei Daphniden , 1913, Zeitschrift für induktive Abstammungs- und Vererbungslehre.

[40]  M. Taborsky,et al.  Animal personality due to social niche specialisation. , 2010, Trends in ecology & evolution.

[41]  A. J. Moore,et al.  Interacting Phenotypes and the Evolutionary Process. II. Selection Resulting from Social Interactions , 1999, The American Naturalist.

[42]  P. Dutilleul,et al.  Among-environment heteroscedasticity and genetic autocorrelation: implications for the study of phenotypic plasticity. , 1995, Genetics.

[43]  D. Cipollini STRETCHING THE LIMITS OF PLASTICITY: CAN A PLANT DEFEND AGAINST BOTH COMPETITORS AND HERBIVORES? , 2004 .

[44]  T. Dooren Reaction norms with bifurcations shaped by evolution. , 2001 .

[45]  I. Dworkin Canalization, Cryptic Variation, and Developmental Buffering: A Critical Examination and Analytical Perspective , 2005 .

[46]  T. F. Hansen,et al.  On Adaptive Accuracy and Precision in Natural Populations , 2006, The American Naturalist.

[47]  Therese A. Markow,et al.  Evolutionary Ecology and Developmental Instability , 1995 .

[48]  M. Slatkin,et al.  Evolution in a Variable Environment , 1990, The American Naturalist.

[49]  D. Gil Chapter 7 Hormones in Avian Eggs: Physiology, Ecology and Behavior , 2008 .

[50]  R. Ydenberg The behavioral ecology of provisioning in birds , 1994 .

[51]  Denis Réale,et al.  Behavioural reaction norms: animal personality meets individual plasticity. , 2010, Trends in ecology & evolution.

[52]  J. Changeux,et al.  Selective stabilisation of developing synapses as a mechanism for the specification of neuronal networks , 1976, Nature.

[53]  Erik Postma,et al.  An ecologist's guide to the animal model. , 2010, The Journal of animal ecology.

[54]  C. Juday Weitere experimentelle Untersuchungen über Artveränderung, speziel über das Wesen quantitativer Artuntershiede bei Daphniden , 1910 .

[55]  D. Stephens The logic of risk-sensitive foraging preferences , 1981, Animal Behaviour.

[56]  Matthew R. Schofield,et al.  Parental behavior exhibits among-individual variance, plasticity, and heterogeneous residual variance , 2013 .

[57]  Niels J Dingemanse,et al.  Artificial environments and the study of 'adaptive' personalities. , 2014, Trends in ecology & evolution.

[58]  A. Agrawal,et al.  Re-evaluating the costs and limits of adaptive phenotypic plasticity , 2010, Proceedings of the Royal Society B: Biological Sciences.

[59]  C. Fox,et al.  Phenotypic plasticity in a complex world: interactive effects of food and temperature on fitness components of a seed beetle , 2007, Oecologia.

[60]  T. Groothuis,et al.  Maternal Androgens Increase Sibling Aggression, Dominance, and Competitive Ability in the Siblicidal Black-Legged Kittiwake (Rissa tridactyla) , 2012, PloS one.

[61]  R. Alford,et al.  The Ontogeny of Fluctuating Asymmetry , 2003, The American Naturalist.

[62]  W. G. Hill,et al.  Genetic analysis of environmental variation. , 2010, Genetics research.

[63]  V. Debat,et al.  Mapping phenotypes: canalization, plasticity and developmental stability , 2001 .

[64]  J. Kingsolver,et al.  Thermal reaction norms for caterpillar growth depend on diet , 2006 .

[65]  Gordon K. Smyth,et al.  Adjusted likelihood methods for modelling dispersion in generalized linear models , 1999 .

[66]  R. Nesse Evolution and the capacity for commitment , 2001 .

[67]  D. Westneat,et al.  Complex interactions among temporal variables affect the plasticity of clutch size in a multi-brooded bird. , 2009, Ecology.

[68]  The Maintenance of Phenotypic Plasticity as a Signal Detection Problem , 1996, The American Naturalist.

[69]  J. Gibbon Scalar expectancy theory and Weber's law in animal timing. , 1977 .

[70]  H. White A Heteroskedasticity-Consistent Covariance Matrix Estimator and a Direct Test for Heteroskedasticity , 1980 .

[71]  M. L. Kagan,et al.  Variable Cell Lineages form the Functional Pea Epidermis , 1992 .

[72]  R. Byrne,et al.  Machiavellian intelligence II : extensions and evaluations , 1997 .

[73]  N. Moran The Evolutionary Maintenance of Alternative Phenotypes , 1992, The American Naturalist.

[74]  I Barber,et al.  Quantitative genetics of behavioural reaction norms: genetic correlations between personality and behavioural plasticity vary across stickleback populations , 2012, Journal of evolutionary biology.

[75]  Individual Variation , 1910, Botanical Gazette.

[76]  Kalev Rattiste,et al.  The rate of ageing in a long-lived bird is not heritable , 2010, Heredity.

[77]  Jonathan Wright,et al.  Social class influences degree of variance sensitivity in wild Siberian jays , 2010 .

[78]  S. Leal Genetics and Analysis of Quantitative Traits , 2001 .

[79]  E. Mayr Animal Species and Evolution , 1964 .

[80]  D. Schluter,et al.  Time, Condition, and the Seasonal Decline of Avian Clutch Size , 1994, The American Naturalist.

[81]  R. Dukas,et al.  Cognitive ecology : the evolutionary ecology of information processing and decision making , 1998 .

[82]  T. Breurch,et al.  A simple test for heteroscedasticity and random coefficient variation (econometrica vol 47 , 1979 .

[83]  C. Waddington Canalization of Development and the Inheritance of Acquired Characters , 1942, Nature.

[84]  Ian R. Cleasby,et al.  Neglected biological patterns in the residuals , 2011, Behavioral Ecology and Sociobiology.

[85]  Garth A. Gibson,et al.  Canalization in evolutionary genetics: a stabilizing theory? , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[86]  H. Reeve,et al.  The Evolution of Conspecific Acceptance Thresholds , 1989, The American Naturalist.

[87]  J. Stamps,et al.  Developmental perspectives on personality: implications for ecological and evolutionary studies of individual differences , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.

[88]  D. Basketter,et al.  Intra‐individual variation of irritant threshold and relationship to transepidermal water loss measurement of skin irritation , 2004, Contact dermatitis.

[89]  Denis Réale,et al.  Measuring individual differences in reaction norms in field and experimental studies: a power analysis of random regression models , 2011 .

[90]  N. Davies,et al.  Rapid decline of host defences in response to reduced cuckoo parasitism: behavioural flexibility of reed warblers in a changing world , 1998, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[91]  A. Møller,et al.  Predictors of resistance to brood parasitism within and among reed warbler populations , 2008 .

[92]  Martijn van de Pol,et al.  Quantifying individual variation in reaction norms: how study design affects the accuracy, precision and power of random regression models , 2012 .

[93]  N. Dingemanse,et al.  Exploring patterns of variation in clutch size–density reaction norms in a wild passerine bird , 2013, Journal of evolutionary biology.

[94]  J. Nelder,et al.  Hierarchical Generalized Linear Models , 1996 .

[95]  E. Golub Immunology, a synthesis , 1987 .

[96]  R A Johnstone,et al.  Eavesdropping and animal conflict , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[97]  N. Dingemanse,et al.  Individual behaviour: Behavioural ecology meets quantitative genetics , 2014 .

[98]  Wade Blanchard,et al.  Genetic variation in threshold reaction norms for alternative reproductive tactics in male Atlantic salmon, Salmo salar , 2008, Proceedings of the Royal Society B: Biological Sciences.

[99]  Michael F. Antolini I. REACTION NORMS , 1992 .

[100]  P. Biro,et al.  Predictability as a Personality Trait: Consistent Differences in Intraindividual Behavioral Variation , 2013, The American Naturalist.

[101]  D. Nussey,et al.  The evolutionary ecology of individual phenotypic plasticity in wild populations , 2007, Journal of evolutionary biology.

[102]  Riccardo Ton,et al.  Intrinsic vs. extrinsic influences on life history expression: metabolism and parentally induced temperature influences on embryo development rate. , 2013, Ecology letters.

[103]  N. Dingemanse,et al.  Quantifying individual variation in behaviour: mixed-effect modelling approaches. , 2013, The Journal of animal ecology.

[104]  L. V. Valen,et al.  A STUDY OF FLUCTUATING ASYMMETRY , 1962 .

[105]  David F Westneat,et al.  Individual Variation in Parental Care Reaction Norms: Integration of Personality and Plasticity , 2011, The American Naturalist.

[106]  Sasha R. X. Dall,et al.  Sexual selection and animal personality , 2010, Biological reviews of the Cambridge Philosophical Society.

[107]  J. Stamps,et al.  Unpredictable animals: individual differences in intraindividual variability (IIV) , 2012, Animal Behaviour.

[108]  H. de Vries,et al.  Delineation of Violence from Functional Aggression in Mice: An Ethological Approach , 2008, Behavior genetics.

[109]  L. Isbell,et al.  Punishment and competition over food in captive rhesus macaques, Macaca mulatta , 2008, Animal Behaviour.

[110]  Anne Charmantier,et al.  Environmental quality and evolutionary potential: lessons from wild populations , 2005, Proceedings of the Royal Society B: Biological Sciences.

[111]  Claude Desplan,et al.  Stochasticity and Cell Fate , 2008, Science.

[112]  E. Snell-Rood,et al.  An overview of the evolutionary causes and consequences of behavioural plasticity , 2013, Animal Behaviour.

[113]  Richard W. Byrne,et al.  Machiavellian Intelligence II: Machiavellian intelligence , 1997 .