A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice

[1]  Wei Xue,et al.  Stepwise cis-Regulatory Changes in ZCN8 Contribute to Maize Flowering-Time Adaptation , 2018, Current Biology.

[2]  J. Wendel,et al.  Core cis‐element variation confers subgenome‐biased expression of a transcription factor that functions in cotton fiber elongation , 2018, The New phytologist.

[3]  Xinhao Ouyang,et al.  The DTH8-Hd1 Module Mediates Day-Length-Dependent Regulation of Rice Flowering. , 2017, Molecular plant.

[4]  Hiroki Takagi,et al.  Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes , 2017, PLoS genetics.

[5]  Kaworu Ebana,et al.  Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. , 2016, Plant & cell physiology.

[6]  Qin He,et al.  Combinations of the Ghd7, Ghd8 and Hd1 genes largely define the ecogeographical adaptation and yield potential of cultivated rice. , 2015, The New phytologist.

[7]  J. Zhao,et al.  Genetic interactions between diverged alleles of Early heading date 1 (Ehd1) and Heading date 3a (Hd3a)/ RICE FLOWERING LOCUS T1 (RFT1) control differential heading and contribute to regional adaptation in rice (Oryza sativa). , 2015, The New phytologist.

[8]  Qian Liu,et al.  The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality , 2015, Nature Genetics.

[9]  Jun Xiao,et al.  COLD1 Confers Chilling Tolerance in Rice , 2015, Cell.

[10]  Jun Xiao,et al.  COLD1 Confers Chilling Tolerance in Rice , 2015, Cell.

[11]  Ruixin Fu,et al.  Multiple NUCLEAR FACTOR Y Transcription Factors Respond to Abiotic Stress in Brassica napus L , 2014, PloS one.

[12]  Georg Haberer,et al.  The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication , 2014, Nature Genetics.

[13]  C. R. McClung,et al.  Variation in Arabidopsis flowering time associated with cis-regulatory variation in CONSTANS , 2014, Nature Communications.

[14]  Gynheung An,et al.  Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes. , 2013, Molecular plant.

[15]  R. Mantovani,et al.  YB-1 (YBX1) does not bind to Y/CCAAT boxes in vivo , 2013, Oncogene.

[16]  A. Niebel,et al.  CCAAT-box binding transcription factors in plants: Y so many? , 2013, Trends in plant science.

[17]  Zhijun Cheng,et al.  Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia , 2013, Proceedings of the National Academy of Sciences.

[18]  Haiyang Wang,et al.  Ehd4 Encodes a Novel and Oryza-Genus-Specific Regulator of Photoperiodic Flowering in Rice , 2013, PLoS genetics.

[19]  Xianghua Li,et al.  OsELF3 is involved in circadian clock regulation for promoting flowering under long-day conditions in rice. , 2013, Molecular plant.

[20]  M. Fornari,et al.  The Promiscuous Life of Plant NUCLEAR FACTOR Y Transcription Factors[W] , 2012, Plant Cell.

[21]  Chuanqing Sun,et al.  LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon). , 2012, Journal of integrative plant biology.

[22]  Xing Wang Deng,et al.  OsELF3-1, an Ortholog of Arabidopsis EARLY FLOWERING 3, Regulates Rice Circadian Rhythm and Photoperiodic Flowering , 2012, PloS one.

[23]  Hiroki Saito,et al.  Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions. , 2012, Plant & cell physiology.

[24]  Kaworu Ebana,et al.  Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering. , 2012, Plant & cell physiology.

[25]  Yongjun Lin,et al.  Two novel positive cis-regulatory elements involved in green tissue-specific promoter activity in rice (Oryza sativa L ssp.) , 2012, Plant Cell Reports.

[26]  Lijun Luo,et al.  Natural variation in GS5 plays an important role in regulating grain size and yield in rice , 2011, Nature Genetics.

[27]  Yuge Li,et al.  A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes , 2011, Plant Methods.

[28]  M. Yano,et al.  Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering. , 2011, The Plant journal : for cell and molecular biology.

[29]  Peng Wang,et al.  A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. , 2011, Molecular plant.

[30]  Zehong Ding,et al.  Diversity and selective sweep in the OsAMT1;1 genomic region of rice , 2011, BMC Evolutionary Biology.

[31]  Chongrong Wang,et al.  Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice , 2011, Theoretical and Applied Genetics.

[32]  Jianmin Wan,et al.  DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously1[W][OA] , 2010, Plant Physiology.

[33]  Kosuke M. Teshima,et al.  Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice , 2009, Proceedings of the National Academy of Sciences.

[34]  Lei Wang,et al.  Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice , 2008, Nature Genetics.

[35]  Shojiro Tamaki,et al.  Hd3a and RFT1 are essential for flowering in rice , 2008, Development.

[36]  Dong Chen,et al.  A Putative CCAAT-Binding Transcription Factor Is a Regulator of Flowering Timing in Arabidopsis1[C][W][OA] , 2007, Plant Physiology.

[37]  M. Matsuoka,et al.  A protocol for Agrobacterium-mediated transformation in rice , 2007, Nature Protocols.

[38]  Detlef Weigel,et al.  Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis[W][OA] , 2006, The Plant Cell Online.

[39]  K. Shinozaki,et al.  Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice. , 2006, Plant & cell physiology.

[40]  R. Hellens,et al.  Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants , 2005, Plant Methods.

[41]  M. Yano,et al.  Adaptation of photoperiodic control pathways produces short-day flowering in rice , 2003, Nature.

[42]  S. Tanksley,et al.  Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[43]  N. Tsutsumi,et al.  ABA-Independent Expression of Rice Alternative Oxidase Genes under Environmental Stresses , 2002 .

[44]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[45]  M. Yano,et al.  Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS , 2000, Plant Cell.

[46]  R. Mantovani,et al.  The molecular biology of the CCAAT-binding factor NF-Y. , 1999, Gene.

[47]  Yoshihiro Ugawa,et al.  Plant cis-acting regulatory DNA elements (PLACE) database: 1999 , 1999, Nucleic Acids Res..

[48]  S. Clough,et al.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.

[49]  J. Rogers,et al.  The cis-Acting Gibberellin Response Complex in High-pl [alpha]-Amylase Gene Promoters (Requirement of a Coupling Element for High-Level Transcription) , 1994, Plant physiology.

[50]  J. Rogers,et al.  Definition and functional implications of gibberellin and abscisic acid cis-acting hormone response complexes. , 1992, The Plant cell.

[51]  F. Gubler,et al.  Gibberellin-responsive elements in the promoter of a barley high-pI alpha-amylase gene. , 1992, The Plant cell.

[52]  K. Skriver,et al.  cis-acting DNA elements responsive to gibberellin and its antagonist abscisic acid. , 1991, Proceedings of the National Academy of Sciences of the United States of America.