Selection of a DNA barcode for Nectriaceae from fungal whole-genomes
暂无分享,去创建一个
[1] Vincent Robert,et al. Identification of Fungal DNA Barcode Targets and PCR Primers Based on Pfam Protein Families and Taxonomic Hierarchy , 2011 .
[2] G. Cardinali,et al. The Quest for a General and Reliable Fungal DNA Barcode , 2011 .
[3] D. Steinke,et al. DNA barcoding of marine metazoa. , 2011, Annual review of marine science.
[4] A. Hehl,et al. Post-transcriptional Repair of a Split Heat Shock Protein 90 Gene by mRNA trans-Splicing*♦ , 2011, The Journal of Biological Chemistry.
[5] H. Korpelainen,et al. DNA barcoding: a tool for improved taxon identification and detection of species diversity , 2011, Biodiversity and Conservation.
[6] G. Moran,et al. Comparative Genomics and the Evolution of Pathogenicity in Human Pathogenic Fungi , 2010, Eukaryotic Cell.
[7] Amanda D. Roe,et al. Multilocus species identification and fungal DNA barcoding: insights from blue stain fungal symbionts of the mountain pine beetle , 2010, Molecular ecology resources.
[8] T. Hsiang,et al. [Comparison of genomes between Aspergillus nidulans and 30 filamentous ascomycetes]. , 2010, Yi chuan = Hereditas.
[9] N. Ivanova,et al. The Role of DNA Barcodes in Understanding and Conservation of Mammal Diversity in Southeast Asia , 2010, PloS one.
[10] Hui Yao,et al. Assessment of candidate plant DNA barcodes using the Rutaceae family , 2010, Science China Life Sciences.
[11] A. Schüßler,et al. DNA barcoding of arbuscular mycorrhizal fungi. , 2010, The New phytologist.
[12] Andrew P. Martin,et al. Barcoding bushmeat: molecular identification of Central African and South American harvested vertebrates , 2010, Conservation Genetics.
[13] 邓志辉,et al. 汉族人群中22个 HLA-Cw 等位基因全长序列单核苷酸多态性分析 , 2010 .
[14] Yunping Xu,et al. [Single nucleotide polymorphisms in 22 HLA-Cw alleles in Chinese Han population]. , 2010, Yi chuan = Hereditas.
[15] Li‐Jun Ma,et al. A practical guide to fungal genome projects: strategy, technology, cost and completion , 2010 .
[16] R. Zehner,et al. Molecular identification of carrion-breeding scuttle flies (Diptera: Phoridae) using COI barcodes , 2010, International Journal of Legal Medicine.
[17] Ting Gao,et al. Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species , 2010, PloS one.
[18] Jeremy R. deWaard,et al. DNA barcodes for 1/1000 of the animal kingdom , 2009, Biology Letters.
[19] G. Amato,et al. The Real maccoyii: Identifying Tuna Sushi with DNA Barcodes – Contrasting Characteristic Attributes and Genetic Distances , 2009, PloS one.
[20] D. Steinke,et al. DNA barcoding of Pacific Canada’s fishes , 2009 .
[21] W. John Kress,et al. A DNA barcode for land plants , 2009, Proceedings of the National Academy of Sciences.
[22] D. Steinke,et al. Barcoding Nemo: DNA-Based Identifications for the Ornamental Fish Trade , 2009, PloS one.
[23] R. Hamelin,et al. Fungal pathogen (mis-) identifications: a case study with DNA barcodes on Melampsora rusts of aspen and white poplar. , 2009, Mycological research.
[24] K. Seifert. Progress towards DNA barcoding of fungi , 2009, Molecular ecology resources.
[25] P. Taberlet,et al. DNA barcoding for ecologists. , 2009, Trends in ecology & evolution.
[26] P. Hebert,et al. Barcode of life. , 2008, Scientific American.
[27] Anna Lysyanskaya,et al. How to keep secrets safe. , 2008, Scientific American.
[28] Peter Forbes,et al. Self-cleaning materials. , 2008, Scientific American.
[29] Magnus Rattray,et al. Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis , 2008, PloS one.
[30] Bernard De Baets,et al. TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers , 2008, Bioinform..
[31] Magnus Rattray,et al. Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi. , 2007, Genome research.
[32] M. Nei,et al. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. , 2007, Molecular biology and evolution.
[33] T. Jeppesen,et al. Molecular phylogenetics and delimitation of species in Cortinarius section Calochroi (Basidiomycota, Agaricales) in Europe. , 2007, Molecular phylogenetics and evolution.
[34] Thierry Vermat,et al. Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding , 2006, Nucleic acids research.
[35] Jason E Stajich,et al. A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis , 2006, BMC Evolutionary Biology.
[36] F. Dromer,et al. Molecular Identification of Zygomycetes from Culture and Experimentally Infected Tissues , 2006, Journal of Clinical Microbiology.
[37] S. Ball,et al. DNA barcodes for insect pest identification: a test case with tussock moths (Lepidoptera: Lymantriidae) , 2006 .
[38] Bin Chen,et al. The HSP90 family of genes in the human genome: insights into their divergence and evolution. , 2005, Genomics.
[39] S. Ball,et al. DNA barcodes for biosecurity: invasive species identification , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.
[40] John Bissett,et al. An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. , 2005, Fungal genetics and biology : FG & B.
[41] Gianni Liti,et al. Yeast evolution and comparative genomics. , 2005, Annual review of microbiology.
[42] Tom Hsiang,et al. Comparison of the Yeast Proteome to Other Fungal Genomes to Find Core Fungal Genes , 2005, Journal of Molecular Evolution.
[43] P. Hebert,et al. Identification of Birds through DNA Barcodes , 2004, PLoS biology.
[44] Izabela Makalowska,et al. FUSARIUM-ID v. 1.0: A DNA Sequence Database for Identifying Fusarium , 2004, European Journal of Plant Pathology.
[45] T. Cavalier-smith,et al. Evolutionary Origins of Hsp90 Chaperones and a Deep Paralogy in their Bacterial Ancestors , 2004, The Journal of eukaryotic microbiology.
[46] M. Ferdig,et al. DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you. , 2003, Trends in parasitology.
[47] Tom Hsiang,et al. Distinguishing plant and fungal sequences in ESTs from infected plant tissues. , 2003, Journal of microbiological methods.
[48] N. Ojima,et al. Cold‐inducible expression of the cell division cycle gene CDC48 and its promotion of cell proliferation during cold acclimation in zebrafish cells 1 , 2003, FEBS letters.
[49] P. Hebert,et al. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[50] Jeremy R. deWaard,et al. Biological identifications through DNA barcodes , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[51] C. d’Enfert,et al. Identifying essential genes in fungal pathogens of humans. , 2002, Trends in microbiology.
[52] H. Bussey,et al. Novel strategies in antifungal lead discovery. , 2002, Current opinion in microbiology.
[53] T. Parkinson. The impact of genomics on anti-infectives drug discovery and development. , 2002, Trends in microbiology.
[54] M. A. Glaring,et al. Transcript profiling in the barley mildew pathogen Blumeria graminis by serial analysis of gene expression (SAGE). , 2002, Molecular plant-microbe interactions : MPMI.
[55] Alexander Pertsemlidis,et al. Having a BLAST with bioinformatics (and avoiding BLASTphemy) , 2001, Genome Biology.
[56] William Stafford Noble,et al. Analysis of strain and regional variation in gene expression in mouse brain , 2001, Genome Biology.
[57] S. Christiansen,et al. Gene identification in the obligate fungal pathogen Blumeria graminis by expressed sequence tag analysis. , 2001, Fungal genetics and biology : FG & B.
[58] J. Sambrook,et al. Molecular Cloning: A Laboratory Manual , 2001 .
[59] S. Lalitha. Primer Premier 5 , 2000 .
[60] A. Bailey,et al. A group of expressed cDNA sequences from the wheat fungal leaf blotch pathogen, Mycosphaerella graminicola (Septoria tritici). , 2000, Fungal genetics and biology : FG & B.
[61] B. Hall,et al. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. , 1999, Molecular biology and evolution.
[62] Jens Christian Frisvad,et al. Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium species , 1999 .
[63] Radhey S. Gupta. Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes , 1998, Microbiology and Molecular Biology Reviews.
[64] W. Pearson. Empirical statistical estimates for sequence similarity searches. , 1998, Journal of molecular biology.
[65] K. O’Donnell,et al. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. , 1997, Molecular phylogenetics and evolution.
[66] B. Barrell,et al. Life with 6000 Genes , 1996, Science.
[67] R. Gupta,et al. Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species. , 1995, Molecular biology and evolution.
[68] R. Schekman,et al. Membrane fusion and the cell cycle: Cdc48p participates in the fusion of ER membranes , 1995, Cell.
[69] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[70] M. Ypma-Wong,et al. Fungus-specific translation elongation factor 3 gene present in Pneumocystis carinii , 1992, Infection and immunity.
[71] W. Fonzi,et al. Isolation and sequence analysis of the gene for translation elongation factor 3 from Candida albicans. , 1992, Nucleic acids research.
[72] D. Botstein,et al. Yeast cell cycle protein CDC48p shows full-length homology to the mammalian protein VCP and is a member of a protein family involved in secretion, peroxisome formation, and gene expression , 1991, The Journal of cell biology.
[73] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[74] C. McLaughlin,et al. Isolation of the yeast gene encoding elongation factor 3 for protein synthesis. , 1987, The Journal of biological chemistry.
[75] D. Finkelstein,et al. Complete sequence of the heat shock-inducible HSP90 gene of Saccharomyces cerevisiae. , 1984, The Journal of biological chemistry.
[76] W. Sebald,et al. Nucleotide sequence of the cloned mRNA and gene of the ADP/ATP carrier from Neurospora crassa. , 1984, The EMBO journal.
[77] W. Neupert,et al. Cell-free synthesis of the mitochondrial ADP/ATP carrier protein of Neurospora crassa. , 1979, European journal of biochemistry.
[78] Shiliang Zhou,et al. DNA barcoding of Panax species. , 2011, Planta medica.
[79] Jing Luo,et al. Practice towards DNA barcoding of the nectriaceous fungi , 2010, Fungal Diversity.
[80] Xiaodong Zheng,et al. DNA barcoding and phylogenetic analysis of Pectinidae (Mollusca: Bivalvia) based on mitochondrial COI and 16S rRNA genes , 2010, Molecular Biology Reports.
[81] Zhuang Wen-ying. Taxonomy and related studies on the nectrioid fungi from China , 2010 .
[82] F. Delsuc. Comparative Genomics , 2010, Lecture Notes in Computer Science.
[83] P. Taberlet,et al. Power and limitations of the chloroplast trn L (UAA) intron for plant DNA barcoding. , 2007, Nucleic acids research.
[84] K. Schubert,et al. Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics , 2007, Studies in mycology.
[85] M. Nei,et al. Molecular Evolutionary Genetics Analysis , 2007 .
[86] D. Baillie,et al. Emerging technologies / Technologies naissantes Recent progress, developments, and issues in comparative fungal genomics , 2004 .
[87] Long Wang,et al. DESIGNING PRIMER SETS FOR AMPLIFICATION OF PARTIAL CALMODULIN GENES FROM PENICILLIA , 2004 .
[88] C. Dieffenbach,et al. PCR primer: a laboratory manual. , 2003 .
[89] S. Chao,et al. Functional and comparative bioinformatic analysis of expressed genes from wheat spikes infected with Fusarium graminearum. , 2002, Molecular plant-microbe interactions : MPMI.
[90] A. Rossman,et al. Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes) , 1999 .
[91] T. A. Hall,et al. BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .
[92] R. Elander,et al. Gene cloning using PCR. , 1998 .
[93] T. Compton. 5 – DEGENERATE PRIMERS FOR DNA AMPLIFICATION , 1990 .
[94] R. Saiki. 2 – AMPLIFICATION OF GENOMIC DNA , 1990 .
[95] M. Innis,et al. Optimization of PCRs , 1990 .
[96] D. Gelfand,et al. 1 – OPTIMIZATION OF PCRs , 1990 .
[97] C. Meyer,et al. DNA Barcoding: Error Rates Based on Comprehensive Sampling , 2005, PLoS biology.