MOLPHY version 2.3 : programs for molecular phylogenetics based on maximum likelihood

[1]  J. Bielawski,et al.  Molecular Phylogenetics and Evolution of the Cytochrome b Gene in the Cyprinid Genus Lythrurus (Actinopterygii: Cypriniformes) , 1998 .

[2]  M. Hasegawa,et al.  Phylogenetic Position of the Mitochondrion-Lacking Protozoan Trichomonas tenax, Based on Amino Acid Sequences of Elongation Factors 1α and 2 , 1997, Journal of Molecular Evolution.

[3]  M. Georges,et al.  Effects of character weighting and species sampling on phylogeny reconstruction: a case study based on DNA sequence data in cetaceans. , 1996, Genetics.

[4]  R. L. Charlebois,et al.  Phylogenetic analysis of carbamoylphosphate synthetase genes: complex evolutionary history includes an internal duplication within a gene which can root the tree of life. , 1996, Molecular biology and evolution.

[5]  A. Meyer,et al.  Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. , 1996, Molecular biology and evolution.

[6]  P. Arctander,et al.  Evidence from milk casein genes that cetaceans are close relatives of hippopotamid artiodactyls. , 1996, Molecular biology and evolution.

[7]  K. Strimmer,et al.  Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies , 1996 .

[8]  D. G. Lloyd,et al.  Molecular data suggest an early acquisition of the mitochondrion endosymbiont , 1996, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[9]  M Hasegawa,et al.  Instability of quartet analyses of molecular sequence data by the maximum likelihood method: the Cetacea/Artiodactyla relationships. , 1996, Molecular phylogenetics and evolution.

[10]  J D Palmer,et al.  The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[11]  C. Gissi,et al.  The guinea-pig is not a rodent , 1996, Nature.

[12]  M. Hasegawa,et al.  Phylogenetic position of cetaceans relative to artiodactyls: reanalysis of mitochondrial and nuclear sequences. , 1996, Molecular biology and evolution.

[13]  W. Doolittle,et al.  A non‐canonical genetic code in an early diverging eukaryotic lineage. , 1996, The EMBO journal.

[14]  T. Hashimoto,et al.  Phylogenetic position of Blastocystis hominis that contains cytochrome-free mitochondria, inferred from the protein phylogeny of elongation factor 1 alpha. , 1996, Molecular and biochemical parasitology.

[15]  A. Meyer,et al.  The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates. , 1996, Genetics.

[16]  A. Meyer,et al.  Molecular evolution of ependymin and the phylogenetic resolution of early divergences among euteleost fishes. , 1996, Molecular biology and evolution.

[17]  N Takezaki,et al.  Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny. , 1996, Molecular biology and evolution.

[18]  M. Goodman,et al.  Evidence on mammalian phylogeny from sequences of exon 28 of the von Willebrand factor gene. , 1996, Molecular phylogenetics and evolution.

[19]  Ú. Árnason,et al.  Cytochrome b nucleotide sequences and the identification of five primary lineages of extant cetaceans. , 1996, Molecular biology and evolution.

[20]  Laurent Duret,et al.  Phylogenetic position of the order Lagomorpha (rabbits, hares and allies) , 1996, Nature.

[21]  M. Hasegawa,et al.  Tempo and mode of synonymous substitutions in mitochondrial DNA of primates. , 1996, Molecular biology and evolution.

[22]  T. Oshima,et al.  Cloning and sequencing of a gene encoding 16S ribosomal RNA from a novel hyperthermophilic archaebacterium NC12. , 1996, Gene.

[23]  M. Hasegawa,et al.  Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1alpha/Tu and 2/G. , 1996, Advances in biophysics.

[24]  M. Nei,et al.  MEGA: Molecular Evolutionary Genetics Analysis, Version 1.02. , 1995 .

[25]  J. R. Stauffer,et al.  Evolution of NADH dehydrogenase subunit 2 in east African cichlid fish. , 1995, Molecular phylogenetics and evolution.

[26]  M. Gouy,et al.  Inferring phylogenies from DNA sequences of unequal base compositions. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[27]  J. Huelsenbeck.  The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining. , 1995, Molecular biology and evolution.

[28]  J. Adachi,et al.  Phylogenetic place of mitochondrion-lacking protozoan, Giardia lamblia, inferred from amino acid sequences of elongation factor 2. , 1995, Molecular biology and evolution.

[29]  Timothy M. Collins,et al.  Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements , 1995, Nature.

[30]  A. Roger,et al.  Direct evidence for secondary loss of mitochondria in Entamoeba histolytica. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[31]  L. Jin,et al.  Phylogeny of six Sciurus aberti subspecies based on nucleotide sequences of cytochrome b. , 1995, Molecular phylogenetics and evolution.

[32]  足立 淳,et al.  Modeling of molecular evolution and maximum likelihood inference of molecular phylogeny , 1995 .

[33]  J. Adachi.  Modeling of molecular evolution and maximumlikelihood inference of molecular phylogeny , 1995 .

[34]  M. Hasegawa,et al.  Phylogenetic place of kinetoplastid protozoa inferred from a protein phylogeny of elongation factor 1 alpha. , 1995, Molecular and biochemical parasitology.

[35]  N. Perna,et al.  Unequal Base Frequencies and the Estimation of Substitution Rates , 1995 .

[36]  W. Brown,et al.  Hydrophobicity and phylogeny , 1995, Nature.

[37]  T. Kocher,et al.  Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization. , 1995, Genetics.

[38]  N. Takahata,et al.  Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[39]  A. Edwards,et al.  Assessing molecular phylogenies , 1995, Science.

[40]  M. Nei,et al.  Assessing molecular phylogenies , 1995, Science.

[41]  J. Avise,et al.  DNA sequence support for a close phylogenetic relationship between some storks and New World vultures , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Peter J. Waddell,et al.  Statistical methods of phylogenetic analysis : including Hadamard conjugations, LogDet transforms and maximum likelihood : a thesis presented in partial fulfilment of the requirements for the degree of Ph.D. in Biology at Massey University , 1995 .

[43]  S. Hedges,et al.  Monophyly of the order Rodentia inferred from mitochondrial DNA sequences of the genes for 12S rRNA, 16S rRNA, and tRNA-valine. , 1995, Molecular biology and evolution.

[44]  M. Hasegawa,et al.  Phylogeny of whales: dependence of the inference on species sampling. , 1995, Molecular biology and evolution.

[45]  P. Lewis,et al.  Success of maximum likelihood phylogeny inference in the four-taxon case. , 1995, Molecular biology and evolution.

[46]  G. B. Golding,et al.  Protein-based phylogenies support a chimeric origin for the eukaryotic genome. , 1995, Molecular biology and evolution.

[47]  D. Penny,et al.  Use of spectral analysis to test hypotheses on the origin of pinnipeds. , 1995, Molecular biology and evolution.

[48]  G. Naylor,et al.  COMPOSITIONAL BIAS, CHARACTER-STATE BIAS, AND CHARACTER-STATE RECONSTRUCTION USING PARSIMONY , 1994 .

[49]  Ú. Árnason,et al.  The complete mitochondrial DNA sequence of the horse, Equus caballus: extensive heteroplasmy of the control region. , 1994, Gene.

[50]  S. Hedges,et al.  Molecules vs. morphology in avian evolution: the case of the "pelecaniform" birds. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[51]  Molecular Phylogenetic Affinities of the Night Parrot (Geopsittacus Occidentalis) and the Ground Parrot (Pezoporus Wallicus) , 1994 .

[52]  K. Kuma,et al.  Mammalian phylogeny inferred from multiple protein data. , 1994, Idengaku zasshi.

[53]  M. Hasegawa,et al.  Eutherian phylogeny as inferred from mitochondrial DNA sequence data. , 1994, Idengaku zasshi.

[54]  Ziheng Yang.  Statistical Properties of the Maximum Likelihood Method of Phylogenetic Estimation and Comparison With Distance Matrix Methods , 1994 .

[55]  C Kelly,et al.  A test of the Markovian model of DNA evolution. , 1994, Biometrics.

[56]  S. Muse,et al.  A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. , 1994, Molecular biology and evolution.

[57]  N. Goldman,et al.  A codon-based model of nucleotide substitution for protein-coding DNA sequences. , 1994, Molecular biology and evolution.

[58]  Miklós Müller,et al.  Primary structure of the hydrogenosomal adenylate kinase of Trichomonas vaginalis and its phylogenetic relationships. , 1994, Molecular and biochemical parasitology.

[59]  T. Ozawa,et al.  Strand asymmetry in human mitochondrial DNA mutations. , 1994, Genomics.

[60]  M. Steel,et al.  Recovering evolutionary trees under a more realistic model of sequence evolution. , 1994, Molecular biology and evolution.

[61]  M. Hasegawa,et al.  Phylogenetic place of guinea pigs: no support of the rodent-polyphyly hypothesis from maximum-likelihood analyses of multiple protein sequences. , 1994, Molecular biology and evolution.

[62]  T. Johansen,et al.  Sequence analysis of 12 structural genes and a novel non-coding region from mitochondrial DNA of Atlantic cod, Gadus morhua. , 1994, Biochimica et biophysica acta.

[63]  Why one-kilobase sequences from mitochondrial DNA fail to solve the Hoatzin phylogenetic enigma. , 1994, Molecular phylogenetics and evolution.

[64]  M. Saito,et al.  Sequencing of Mitochondrial Cytochrome b Genes for the Identification of Meat Species , 1994 .

[65]  G. Olsen,et al.  Transcription factor IID in the Archaea: sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[66]  A Janke,et al.  The marsupial mitochondrial genome and the evolution of placental mammals. , 1994, Genetics.

[67]  J. Felsenstein,et al.  A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. , 1994, Molecular biology and evolution.

[68]  D. Higgins,et al.  Molecular evidence for the inclusion of cetaceans within the order Artiodactyla. , 1994, Molecular biology and evolution.

[69]  M. Hasegawa,et al.  Phylogenetic place of a mitochondria-lacking protozoan, Entamoeba histolytica, inferred from amino acid sequences of elongation factor 2'. , 1994, Idengaku zasshi.

[70]  C. Krajewski,et al.  PHYLOGENY OF CRANES (GRUIFORMES: GRUIDAE) BASED ON CYTOCHROME-B DNA SEQUENCES , 1994 .

[71]  W. Wheeler,et al.  Higher level relationships of the arctoid Carnivora based on sequence data and "total evidence". , 1994, Molecular phylogenetics and evolution.

[72]  Ú. Árnason,et al.  Relationship of baleen whales established by cytochrome b gene sequence comparison , 1994, Nature.

[73]  J. Lake,et al.  Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[74]  Hideo Matsuda,et al.  fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood , 1994, Comput. Appl. Biosci..

[75]  Masami Hasegawa,et al.  Accuracies of the simple methods for estimating the bootstrap probability of a maximum-likelihood tree , 1994 .

[76]  M. Hasegawa,et al.  Protein phylogeny gives a robust estimation for early divergences of eukaryotes: phylogenetic place of a mitochondria-lacking protozoan, Giardia lamblia. , 1994, Molecular biology and evolution.

[77]  K. Tamura,et al.  Model selection in the estimation of the number of nucleotide substitutions. , 1994, Molecular biology and evolution.

[78]  J. Palmer,et al.  Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[79]  J. Retief,et al.  Evolution of the monotremes. The sequences of the protamine P1 genes of platypus and echidna. , 1993, European journal of biochemistry.

[80]  A recent origin of marmots. , 1993, Molecular phylogenetics and evolution.

[81]  H. Philippe,et al.  MUST, a computer package of Management Utilities for Sequences and Trees. , 1993, Nucleic acids research.

[82]  Z. Yang,et al.  Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. , 1993, Molecular biology and evolution.

[83]  J. Cracraft,et al.  Recovering phylogenetic signal from DNA sequences: relationships within the corvine assemblage (class aves) as inferred from complete sequences of the mitochondrial DNA cytochrome-b gene. , 1993, Molecular biology and evolution.

[84]  J. Brosius,et al.  Neural BC1 RNA as an evolutionary marker: guinea pig remains a rodent. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[85]  S. K. Davis,et al.  Phylogenetic relationships of pocket gophers (Cratogeomys and Pappogeomys) based on mitochondrial DNA cytochrome b sequences. , 1993, Molecular phylogenetics and evolution.

[86]  M. Nei,et al.  Theoretical foundation of the minimum-evolution method of phylogenetic inference. , 1993, Molecular biology and evolution.

[87]  Andrew P. Martin,et al.  Protein evolution in different cellular environments: cytochrome b in sharks and mammals. , 1993, Molecular biology and evolution.

[88]  László A. Székely,et al.  A complete family of phylogenetic invariants for any number of taxa under Kimura's 3ST model , 1993 .

[89]  M. Sanderson,et al.  MacClade, Version 3.0. , 1993 .

[90]  J. R. Stauffer,et al.  Similar morphologies of cichlid fish in Lakes Tanganyika and Malawi are due to convergence. , 1993, Molecular phylogenetics and evolution.

[91]  M. Nei,et al.  Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. , 1993, Molecular biology and evolution.

[92]  S. Stickel,et al.  Monophyletic origins of the metazoa: an evolutionary link with fungi , 1993, Science.

[93]  M. Hasegawa,et al.  Relative efficiencies of the maximum likelihood, maximum parsimony, and neighbor-joining methods for estimating protein phylogeny. , 1993, Molecular phylogenetics and evolution.

[94]  C. Stewart.  The powers and pitfalls of parsimony , 1993, Nature.

[95]  A. Meyer,et al.  Revised phylogeny of whales suggested by mitochondrial ribosomal DNA sequences , 1993, Nature.

[96]  M. Novacek,et al.  South America's earliest rodent and recognition of a new interval of mammalian evolution , 1993, Nature.

[97]  D. Ord,et al.  PAUP:Phylogenetic analysis using parsi-mony , 1993 .

[98]  John J. Flynn,et al.  A Phylogenetic Analysis and Definition of the Carnivora , 1993 .

[99]  R. Crozier,et al.  The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. , 1993, Genetics.

[100]  S. Henikoff,et al.  Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[101]  M. Katoh,et al.  Identification of Tetrahymena 14-nm filament-associated protein as elongation factor 1 alpha. , 1992, Experimental cell research.

[102]  H Kishino,et al.  Freeing phylogenies from artifacts of alignment. , 1992, Molecular biology and evolution.

[103]  P. C. Huang,et al.  The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates. , 1992, Nucleic acids research.

[104]  D. Sankoff,et al.  Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[105]  G. Gonnet,et al.  Exhaustive matching of the entire protein sequence database. , 1992, Science.

[106]  M. Hasegawa,et al.  Amino acid substitution of proteins coded for in mitochondrial DNA during mammalian evolution. , 1992, Idengaku zasshi.

[107]  William R. Taylor,et al.  The rapid generation of mutation data matrices from protein sequences , 1992, Comput. Appl. Biosci..

[108]  Rainer Fuchs,et al.  CLUSTAL V: improved software for multiple sequence alignment , 1992, Comput. Appl. Biosci..

[109]  M. Novacek,et al.  Mammalian phytogeny: shaking the tree , 1992, Nature.

[110]  政美 長谷川,et al.  Molphy, programs for molecular phylogenetics, I : protml, maximum likelihood inference of protein phylogeny , 1992 .

[111]  T. Hashimoto.  Phylogenetic place of Giardia lamblia, a protozoan that lacks mitochondria , 1992 .

[112]  J. Adachi,et al.  MOLPHY, programs for molecular phylogenetics , 1992 .

[113]  M. Miyamoto,et al.  Phylogenetic Analysis of DNA Sequences , 1991 .

[114]  Dan Graur,et al.  Is the guinea-pig a rodent? , 1991, Nature.

[115]  S. Altschul.  Amino acid substitution matrices from an information theoretic perspective , 1991, Journal of Molecular Biology.

[116]  K. Ohno,et al.  Distinct clustering of point mutations in mitochondrial DNA among patients with mitochondrial encephalomyopathies and with Parkinson's disease. , 1991, Biochemical and biophysical research communications.

[117]  A. Wilson,et al.  Mitochondrial resolution of a deep branch in the genealogical tree for perching birds , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[118]  Jon E. Ahlquist,et al.  Phylogeny and Classification of the Birds: A Study in Molecular Evolution , 1991 .

[119]  D M Irwin,et al.  Evolution of the cytochrome b gene of mammals. , 1991, Journal of molecular evolution.

[120]  S. Osawa,et al.  Evolution of Archaebacteria: Phylogenetic Relationships Among Archaebacteria, Eubacteria, and Eukaryotes , 1991 .

[121]  Cloning and characterization of an unusual elongation factor-1α cDNA from Entamoeba histolytica , 1991 .

[122]  Nick Goldman,et al.  MAXIMUM LIKELIHOOD INFERENCE OF PHYLOGENETIC TREES, WITH SPECIAL REFERENCE TO A POISSON PROCESS MODEL OF DNA SUBSTITUTION AND TO PARSIMONY ANALYSES , 1990 .

[123]  A. Meyer,et al.  Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences , 1990, Nature.

[124]  J. Condeelis,et al.  Identification of an actin-binding protein from Dictyostelium as elongation factor 1a , 1990, Nature.

[125]  F. Klink,et al.  Cloning and sequencing of the gene coding for the elongation factor 1α from the archaebacterium Thermoplasma acidophilum , 1990 .

[126]  Brian W. Matthews,et al.  Ancestral lysozymes reconstructed, neutrality tested, and thermostability linked to hydrocarbon packing , 1990, Nature.

[127]  G. L. Hofacker,et al.  Stochastic traits of molecular evolution--acceptance of point mutations in native actin genes. , 1990, Journal of theoretical biology.

[128]  P. Desjardins,et al.  Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. , 1990, Journal of molecular biology.

[129]  J. Oliver,et al.  The general stochastic model of nucleotide substitution. , 1990, Journal of theoretical biology.

[130]  G. Zaccai,et al.  Functional implications related to the gene structure of the elongation factor EF-Tu from Halobacterium marismortui. , 1990, Nucleic acids research.

[131]  P. E. Montandon,et al.  Structure and expression of the Euglena gracilis nuclear gene coding for the translation elongation factor EF-1 alpha , 1990, Nucleic Acids Res..

[132]  岸野 洋久.  Maximum likelihood inference of molecular phylogeny , 1990 .

[133]  M. Goodman,et al.  Perspectives from amino acid and nucleotide sequences on cladistic relationships among higher taxa of eutheria , 1990 .

[134]  H. Kishino,et al.  Close Evolutionary Relatedness of Archaebacteria with Eukaryotes , 1990 .

[135]  T. Miyata,et al.  Close evolutionary relatedness of archaebacteria, Methanococcus and Halobacterium, to eukaryotes demonstrated by composite phylogenetic trees of elongation factors EF-Tu and EF-G: Eocyte tree is unlikely , 1990 .

[136]  C Saccone,et al.  Influence of base composition on quantitative estimates of gene evolution. , 1990, Methods in enzymology.

[137]  N. Saitou,et al.  Maximum likelihood methods. , 1990, Methods in enzymology.

[138]  Michael D. Hendy,et al.  A Framework for the Quantitative Study of Evolutionary Trees , 1989 .

[139]  H. Kishino,et al.  Heterogeneity of tempo and mode of mitochondrial DNA evolution among mammalian orders. , 1989, Idengaku zasshi.

[140]  C. Shewmaker,et al.  Structure and expression of elongation factor 1α in tomato , 1989 .

[141]  D. Kowbel,et al.  Nucleotide sequence of the apocytochrome B gene in white sturgeon mitochondrial DNA. , 1989, Nucleic acids research.

[142]  D. Melton,et al.  The mRNA encoding elongation factor 1-α (EF-1α) is a major transcript at the midblastula transition in Xenopus , 1989 .

[143]  S. Nagata,et al.  Isolation and characterization of the human chromosomal gene for polypeptide chain elongation factor-1 alpha. , 1989, The Journal of biological chemistry.

[144]  C. Woese,et al.  The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction. , 1989, Systematic and Applied Microbiology.

[145]  M. Nei,et al.  Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection , 1988, Nature.

[146]  A. Wyss.  Evidence from flipper structure for a single origin of pinnipeds , 1988, Nature.

[147]  C. Cziepluch,et al.  Two genes encode related cytoplasmic elongation factors 1 alpha (EF-1 alpha) in Drosophila melanogaster with continuous and stage specific expression. , 1988, Nucleic acids research.

[148]  J. Felsenstein.  Phylogenies from molecular sequences: inference and reliability. , 1988, Annual review of genetics.

[149]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[150]  M. Clegg,et al.  Evolutionary Analysis of Plant DNA Sequences , 1987, The American Naturalist.

[151]  J. Hartigan,et al.  Asynchronous distance between homologous DNA sequences. , 1987, Biometrics.

[152]  J. Hartigan,et al.  Statistical Analysis of Hominoid Molecular Evolution , 1987 .

[153]  M. Nei.  Molecular Evolutionary Genetics , 1987 .

[154]  Allan C. Wilson,et al.  Adaptive evolution in the stomach lysozymes of foregut fermenters , 1987, Nature.

[155]  L. M. Lira,et al.  The primary structure and the functional domains of an elongation factor-1 alpha from Mucor racemosus. , 1986, The Journal of biological chemistry.

[156]  M. Goodman,et al.  Paenungulata: a comparison of the hemoglobin sequences from elephant, hyrax, and manatee. , 1986, Molecular biology and evolution.

[157]  S. Tavaré.  Some probabilistic and statistical problems in the analysis of DNA sequences , 1986 .

[158]  B. Roe,et al.  The complete nucleotide sequence of the Xenopus laevis mitochondrial genome. , 1985, The Journal of biological chemistry.

[159]  J. Felsenstein.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[160]  W. Luckett,et al.  Evolutionary Relationships among Rodents: Comments and Conclusions , 1985 .

[161]  W. Möller,et al.  The primary structure of elongation factor EF‐1 alpha from the brine shrimp Artemia. , 1984, The EMBO journal.

[162]  H. Kishino,et al.  A New Molecular Clock of Mitochondrial DNA and the Evolution of Hominoids , 1984 .

[163]  M. Hasegawa,et al.  MAXIMUM LIKELIHOOD METHOD OF PHYLOGENETIC INFERENCE FROM DNA SEQUENCE DATA , 1984 .

[164]  J. Felsenstein.  Methods for Inferring Phylogenies: A Statistical View , 1983 .

[165]  J. Felsenstein.  Numerical Methods for Inferring Evolutionary Trees , 1982, The Quarterly Review of Biology.

[166]  F. Sanger,et al.  Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome. , 1982, Journal of molecular biology.

[167]  D. A. Clayton,et al.  Sequence and gene organization of mouse mitochondrial DNA , 1981, Cell.

[168]  M. Kimura,et al.  A model of evolutionary base substitutions and its application with special reference to rapid change of pseudogenes. , 1981, Genetics.

[169]  F. Sanger,et al.  Sequence and organization of the human mitochondrial genome , 1981, Nature.

[170]  M. Kimura.  Estimation of evolutionary distances between homologous nucleotide sequences. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[171]  J. Hill,et al.  A world list of mammalian species , 1980 .

[172]  A. Wilson,et al.  Amino acid sequence of California quail lysozyme. Effect of evolutionary substitutions on the antigenic structure of lysozyme. , 1979, Biochemistry.

[173]  S. Jeffery.  Evolution of Protein Molecules , 1979 .

[174]  J. Felsenstein.  Cases in which Parsimony or Compatibility Methods will be Positively Misleading , 1978 .

[175]  Joseph Felsenstein,et al.  The number of evolutionary trees , 1978 .

[176]  M. O. Dayhoff,et al.  22 A Model of Evolutionary Change in Proteins , 1978 .

[177]  R. Chakraborty,et al.  Estimation of time of divergence from phylogenetic studies. , 1977, Canadian journal of genetics and cytology. Journal canadien de genetique et de cytologie.

[178]  R. Tedford,et al.  Relationship of Pinnipeds to Other Carnivores (Mammalia) , 1976 .

[179]  H. Akaike.  A new look at the statistical model identification , 1974 .

[180]  Joseph Felsenstein,et al.  Maximum Likelihood and Minimum-Steps Methods for Estimating Evolutionary Trees from Data on Discrete Characters , 1973 .

[181]  H. Akaike,et al.  Information Theory and an Extension of the Maximum Likelihood Principle , 1973 .

[182]  J. Neyman.  MOLECULAR STUDIES OF EVOLUTION: A SOURCE OF NOVEL STATISTICAL PROBLEMS* , 1971 .

[183]  T. Jukes.  CHAPTER 24 – Evolution of Protein Molecules , 1969 .

[184]  Iupac-Iub Comm. on Biochem. Nomencl.  IUPAC-IUB Commission on Biochemical Nomenclature. A one-letter notation for amino acid sequences. Tentative rules. , 1968, Biochemistry.

[185]  M. Kimura.  Evolutionary Rate at the Molecular Level , 1968, Nature.

[186]  R. Nowak,et al.  Walker's mammals of the world , 1968 .

[187]  W. Fitch,et al.  Construction of phylogenetic trees. , 1967, Science.

[188]  N. Sueoka,et al.  CORRELATION BETWEEN BASE COMPOSITION OF DEOXYRIBONUCLEIC ACID AND AMINO ACID COMPOSITION OF PROTEIN. , 1961, Proceedings of the National Academy of Sciences of the United States of America.

[189]  W. K. Gregory,et al.  THE MONOTREMES AND THE : PALIMPSEST THEORY , 2022 .