Density functional theory with dispersion corrections for supramolecular structures, aggregates, and complexes of (bio)organic molecules.
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[1] Stefan Grimme,et al. Semiempirical GGA‐type density functional constructed with a long‐range dispersion correction , 2006, J. Comput. Chem..
[2] S. Grimme,et al. Density functional theory including dispersion corrections for intermolecular interactions in a large benchmark set of biologically relevant molecules. , 2006, Physical chemistry chemical physics : PCCP.
[3] Sheng Yao,et al. Fluorescent H-aggregates of merocyanine dyes. , 2006, Angewandte Chemie.
[4] Edward A. Jackson,et al. Corannulene: A Preference for exo-Metal Binding. X-ray Structural Characterization of [Ru2(O2CCF3)2(CO)4·(η2-C20H10)2] , 2006 .
[5] R. Bartlett,et al. Ab initio correlation functionals from second-order perturbation theory. , 2006, The Journal of chemical physics.
[6] R J Needs,et al. Quantum Monte Carlo calculations of the dissociation energy of the water dimer. , 2006, The Journal of chemical physics.
[7] Hans-Joachim Werner,et al. Calculation of intermolecular interactions in the benzene dimer using coupled-cluster and local electron correlation methods. , 2006, Physical chemistry chemical physics : PCCP.
[8] J. Sauer,et al. Treating dispersion effects in extended systems by hybrid MP2:DFT calculations--protonation of isobutene in zeolite ferrierite. , 2006, Physical chemistry chemical physics : PCCP.
[9] Krzysztof Szalewicz,et al. Potential energy surface for the benzene dimer and perturbational analysis of π-π interactions , 2006 .
[10] G. Cinacchi. Comment on "Coarse-grained interaction potentials for polyaromatic hydrocarbons" [J. Chem. Phys. 124, 054307 (2006)]. , 2006, The Journal of chemical physics.
[11] C. David Sherrill,et al. High-Accuracy Quantum Mechanical Studies of π−π Interactions in Benzene Dimers , 2006 .
[12] S. Tsuzuki. Interactions with Aromatic Rings , 2006 .
[13] S. Grimme. Scheinbar einfache stereo‐elektronische Effekte in Alkan‐Isomeren und ihre Auswirkungen für die Kohn‐Sham‐Dichtefunktionaltheorie , 2006 .
[14] Martin Head-Gordon,et al. A fast correlated electronic structure method for computing interaction energies of large van der Waals complexes applied to the fullerene-porphyrin dimer. , 2006, Physical chemistry chemical physics : PCCP.
[15] A. Becke,et al. A post-Hartree-Fock model of intermolecular interactions: inclusion of higher-order corrections. , 2006, The Journal of chemical physics.
[16] A. Tkatchenko,et al. Adsorption of Ar on graphite using London dispersion forces corrected Kohn-Sham density functional theory , 2006 .
[17] Jirí Cerný,et al. Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs. , 2006, Physical chemistry chemical physics : PCCP.
[18] Jae Shin Lee,et al. Accurate ab initio binding energies of the benzene dimer. , 2006, The journal of physical chemistry. A.
[19] Donald G Truhlar,et al. Comparative DFT study of van der Waals complexes: rare-gas dimers, alkaline-earth dimers, zinc dimer, and zinc-rare-gas dimers. , 2006, The journal of physical chemistry. A.
[20] Kazumasa Honda,et al. Estimated MP2 and CCSD(T) interaction energies of n-alkane dimers at the basis set limit: comparison of the methods of Helgaker et al. and Feller. , 2006, The Journal of chemical physics.
[21] James A. Platts,et al. Hybrid density functional theory for π‐stacking interactions: Application to benzenes, pyridines, and DNA bases , 2006, J. Comput. Chem..
[22] Evert Jan Baerends,et al. A simple natural orbital mechanism of "pure" van der Waals interaction in the lowest excited triplet state of the hydrogen molecule. , 2006, The Journal of chemical physics.
[23] Donald G Truhlar,et al. Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions. , 2006, Journal of chemical theory and computation.
[24] S. Grimme. Semiempirical hybrid density functional with perturbative second-order correlation. , 2006, The Journal of chemical physics.
[25] Stefan Grimme,et al. The importance of inter- and intramolecular van der Waals interactions in organic reactions: the dimerization of anthracene revisited. , 2006, Angewandte Chemie.
[26] A. Becke,et al. Exchange-hole dipole moment and the dispersion interaction: high-order dispersion coefficients. , 2006, The Journal of chemical physics.
[27] O. A. von Lilienfeld,et al. Coarse-grained interaction potentials for polyaromatic hydrocarbons. , 2005, The Journal of chemical physics.
[28] D. Langreth,et al. Interaction energies of monosubstituted benzene dimers via nonlocal density functional theory. , 2005, The Journal of chemical physics.
[29] Binding energies in benzene dimers: Nonlocal density functional calculations. , 2005, The Journal of chemical physics.
[30] J. Ángyán,et al. Potential curves for alkaline-earth dimers by density functional theory with long-range correlation corrections , 2005 .
[31] Adrienn Ruzsinszky,et al. Binding energy curves from nonempirical density functionals II. van der Waals bonds in rare-gas and alkaline-earth diatomics. , 2005, The journal of physical chemistry. A.
[32] H. Werner,et al. A short-range gradient-corrected density functional in long-range coupled-cluster calculations for rare gas dimers. , 2005, Physical chemistry chemical physics : PCCP.
[33] S. Grimme,et al. Weak intermolecular interactions calculated with diffusion Monte Carlo. , 2005, The Journal of chemical physics.
[34] A. Becke,et al. A density-functional model of the dispersion interaction. , 2005, The Journal of chemical physics.
[35] Stefan Grimme,et al. Van der Waals complexes of polar aromatic molecules: unexpected structures for dimers of azulene. , 2005, Journal of the American Chemical Society.
[36] Stefan Grimme,et al. A Theoretical Investigation of the Geometries and Binding Energies of Molecular Tweezer and Clip Host-Guest Systems. , 2005, Journal of chemical theory and computation.
[37] Kimihiko Hirao,et al. A density-functional study on pi-aromatic interaction: benzene dimer and naphthalene dimer. , 2005, The Journal of chemical physics.
[38] Stefan Grimme,et al. Van der Waals interactions in aromatic systems: structure and energetics of dimers and trimers of pyridine. , 2005, Chemphyschem : a European journal of chemical physics and physical chemistry.
[39] Joachim Sauer,et al. Protonated isobutene in zeolites: tert-butyl cation or alkoxide? , 2005, Angewandte Chemie.
[40] A. Becke,et al. A post-Hartree-Fock model of intermolecular interactions. , 2005, The Journal of chemical physics.
[41] Donald G Truhlar,et al. How well can new-generation density functional methods describe stacking interactions in biological systems? , 2005, Physical chemistry chemical physics : PCCP.
[42] O. A. von Lilienfeld,et al. Performance of optimized atom-centered potentials for weakly bonded systems using density functional theory , 2005 .
[43] Andreas Savin,et al. van der Waals forces in density functional theory: Perturbational long-range electron-interaction corrections , 2005, cond-mat/0505062.
[44] Fernando Flores,et al. Van der Waals forces in the local-orbital Density Functional Theory , 2005 .
[45] T. Van Voorhis,et al. Fluctuation-dissipation theorem density-functional theory. , 2005, The Journal of chemical physics.
[46] Donald G Truhlar,et al. Multicoefficient extrapolated density functional theory studies of pi...pi interactions: the benzene dimer. , 2005, The journal of physical chemistry. A.
[47] van der Waals interaction of simple, parallel polymers. , 2005, The Journal of chemical physics.
[48] A. Becke,et al. Exchange-hole dipole moment and the dispersion interaction. , 2005, The Journal of chemical physics.
[49] Jirí Cerný,et al. The X3LYP extended density functional accurately describes H-bonding but fails completely for stacking. , 2005, Physical chemistry chemical physics : PCCP.
[50] H. Reich,et al. The strength of parallel-displaced arene-arene interactions in chloroform. , 2005, The Journal of organic chemistry.
[51] J. Steyaert,et al. Influence of the π–π interaction on the hydrogen bonding capacity of stacked DNA/RNA bases , 2005, Nucleic acids research.
[52] J. Perdew,et al. Test of a nonempirical density functional: short-range part of the van der Waals interaction in rare-gas dimers. , 2005, The Journal of chemical physics.
[53] Lifeng Chi,et al. Simple and complex lattices of N-alkyl fatty acid amides on a highly oriented pyrolytic graphite surface. , 2005, Langmuir : the ACS journal of surfaces and colloids.
[54] T. Walsh,et al. Exact exchange and Wilson-Levy correlation: a pragmatic device for studying complex weakly-bonded systems. , 2005, Physical chemistry chemical physics : PCCP.
[55] E. Schröder,et al. van der Waals interactions of polycyclic aromatic hydrocarbon dimers. , 2005, The Journal of chemical physics.
[56] D. Wales,et al. Stacked clusters of polycyclic aromatic hydrocarbon molecules. , 2004, The journal of physical chemistry. A.
[57] Sławomir M Cybulski,et al. Critical examination of the supermolecule density functional theory calculations of intermolecular interactions. , 2005, The Journal of chemical physics.
[58] M. Schütz,et al. Density-functional theory-symmetry-adapted intermolecular perturbation theory with density fitting: a new efficient method to study intermolecular interaction energies. , 2005, The Journal of chemical physics.
[59] Ivano Tavernelli,et al. Variational optimization of effective atom centered potentials for molecular properties. , 2005, The Journal of chemical physics.
[60] Henrik Rydberg,et al. Van der Waals Density Functional Theory with Applications , 2005 .
[61] M. Swart,et al. Hydrogen bonds of RNA are stronger than those of DNA, but NMR monitors only presence of methyl substituent in uracil/thymine. , 2004, Journal of the American Chemical Society.
[62] Ivano Tavernelli,et al. Optimization of effective atom centered potentials for london dispersion forces in density functional theory. , 2004, Physical review letters.
[63] Alexander D. MacKerell. Empirical force fields for biological macromolecules: Overview and issues , 2004, J. Comput. Chem..
[64] Stefan Grimme,et al. Accurate description of van der Waals complexes by density functional theory including empirical corrections , 2004, J. Comput. Chem..
[65] Donald G. Truhlar,et al. Hybrid Meta Density Functional Theory Methods for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions: The MPW1B95 and MPWB1K Models and Comparative Assessments for Hydrogen Bonding and van der Waals Interactions , 2004 .
[66] S. Grimme. On the importance of electron correlation effects for the pi-pi interactions in cyclophanes. , 2004, Chemistry.
[67] S. Grimme,et al. Weak hydrogen bridges: a systematic theoretical study on the nature and strength of C--H...F--C interactions. , 2004, Chemistry.
[68] F. Würthner,et al. Supramolecular polymerization and gel formation of bis(merocyanine) dyes driven by dipolar aggregation. , 2004, Journal of the American Chemical Society.
[69] Paul Geerlings,et al. Influence of Stacking on Hydrogen Bonding: Quantum Chemical Study on Pyridine-Benzene Model Complexes , 2004 .
[70] C. David Sherrill,et al. Substituent Effects in π−π Interactions: Sandwich and T-Shaped Configurations , 2004 .
[71] M. Nishio. CH/π hydrogen bonds in crystals , 2004 .
[72] Joachim Sauer,et al. A hybrid MP2/planewave-DFT scheme for large chemical systems: proton jumps in zeolites , 2004 .
[73] William A. Goddard,et al. Bonding Properties of the Water Dimer: A Comparative Study of Density Functional Theories , 2004 .
[74] Xin Xu,et al. From The Cover: The X3LYP extended density functional for accurate descriptions of nonbond interactions, spin states, and thermochemical properties. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[75] Petros Koumoutsakos,et al. Dispersion corrections to density functionals for water aromatic interactions. , 2004, The Journal of chemical physics.
[76] M. Dion,et al. van der Waals density functional for general geometries. , 2004, Physical review letters.
[77] G. Scuseria,et al. Comparative assessment of a new nonempirical density functional: Molecules and hydrogen-bonded complexes , 2003 .
[78] E. C. Lim,et al. Evaluation of the Hartree−Fock Dispersion (HFD) Model as a Practical Tool for Probing Intermolecular Potentials of Small Aromatic Clusters: Comparison of the HFD and MP2 Intermolecular Potentials , 2003 .
[79] S. Grimme. Improved second-order Møller–Plesset perturbation theory by separate scaling of parallel- and antiparallel-spin pair correlation energies , 2003 .
[80] F. Diederich,et al. Interactions with aromatic rings in chemical and biological recognition. , 2003, Angewandte Chemie.
[81] David J. Tozer,et al. Helium dimer dispersion forces and correlation potentials in density functional theory. , 2002 .
[82] Georg Jansen,et al. Intermolecular induction and exchange-induction energies from coupled-perturbed Kohn–Sham density functional theory , 2002 .
[83] Edward F. Valeev,et al. Estimates of the Ab Initio Limit for π−π Interactions: The Benzene Dimer , 2002 .
[84] Sławomir M. Cybulski,et al. Comment on “Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory treatment” [J. Chem. Phys. 114, 5149 (2001)] , 2002 .
[85] Tanja van Mourik,et al. A critical note on density functional theory studies on rare-gas dimers , 2002 .
[86] Georg Jansen,et al. First-order intermolecular interaction energies from Kohn–Sham orbitals , 2002 .
[87] J. Šponer,et al. DNA Bases and Base Pairs: Ab Initio Calculations , 2002 .
[88] F. Weigend,et al. Efficient use of the correlation consistent basis sets in resolution of the identity MP2 calculations , 2002 .
[89] S. Tsuzuki,et al. Origin of attraction and directionality of the pi/pi interaction: model chemistry calculations of benzene dimer interaction. , 2002, Journal of the American Chemical Society.
[90] Qin Wu,et al. Empirical correction to density functional theory for van der Waals interactions , 2002 .
[91] Saroj K. Nayak,et al. Towards extending the applicability of density functional theory to weakly bound systems , 2001 .
[92] G. Corongiu,et al. Van der Waals Interaction Energies of Helium, Neon, and Argon with Naphthalene , 2001 .
[93] Thomas Frauenheim,et al. Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory based treatment , 2001 .
[94] C. Chabalowski,et al. Using Kohn−Sham Orbitals in Symmetry-Adapted Perturbation Theory to Investigate Intermolecular Interactions , 2001 .
[95] Thomas R. Cundari,et al. Reviews in Computational Chemistry, Reviews in Computational Chemistry , 2000 .
[96] E. Baerends,et al. Kohn-Sham Density Functional Theory: Predicting and Understanding Chemistry , 2007 .
[97] N. Kannan,et al. Aromatic clusters: a determinant of thermal stability of thermophilic proteins. , 2000, Protein engineering.
[98] Trygve Helgaker,et al. Molecular Electronic-Structure Theory: Helgaker/Molecular Electronic-Structure Theory , 2000 .
[99] C. Journet,et al. Determination of the binding energy of methane on single-walled carbon nanotube bundles , 2000 .
[100] J. SantaLucia,et al. Thermodynamic parameters for DNA sequences with dangling ends. , 2000, Nucleic acids research.
[101] Wolfram Koch,et al. A Chemist's Guide to Density Functional Theory , 2000 .
[102] P Hobza,et al. Noncovalent interactions: a challenge for experiment and theory. , 2000, Chemical reviews.
[103] P Hobza,et al. Structure, energetics, and dynamics of the nucleic Acid base pairs: nonempirical ab initio calculations. , 1999, Chemical reviews.
[104] Arshad Khan,et al. Theoretical studies of CH4(H2O)20, (H2O)21, (H2O)20, and fused dodecahedral and tetrakaidecahedral structures: How do natural gas hydrates form? , 1999 .
[105] J. Sabina,et al. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. , 1999, Journal of molecular biology.
[106] K. Morokuma,et al. A NEW ONIOM IMPLEMENTATION IN GAUSSIAN98. PART I. THE CALCULATION OF ENERGIES, GRADIENTS, VIBRATIONAL FREQUENCIES AND ELECTRIC FIELD DERIVATIVES , 1999 .
[107] V. Barone,et al. Toward reliable density functional methods without adjustable parameters: The PBE0 model , 1999 .
[108] Á. Pérez‐Jiménez,et al. Density-functional study of van der Waals forces on rare-gas diatomics: Hartree–Fock exchange , 1999 .
[109] Vincenzo Barone,et al. Exchange functionals with improved long-range behavior and adiabatic connection methods without adjustable parameters: The mPW and mPW1PW models , 1998 .
[110] H. Rydberg,et al. UNIFIED TREATMENT OF ASYMPTOTIC VAN DER WAALS FORCES , 1998, cond-mat/9805352.
[111] Dmitrii E. Makarov,et al. van der Waals Energies in Density Functional Theory , 1998 .
[112] S. Tsuzuki,et al. Ab Initio Calculations of Intermolecular Interaction Potentials of Corannulene Dimer , 1998 .
[113] M Suzuki,et al. Use of a 3D structure data base for understanding sequence-dependent conformational aspects of DNA. , 1997, Journal of molecular biology.
[114] A. Becke. Density-functional thermochemistry. V. Systematic optimization of exchange-correlation functionals , 1997 .
[115] F. Weigend,et al. RI-MP2: first derivatives and global consistency , 1997 .
[116] Florian Weigend,et al. Auxiliary basis sets for main row atoms and transition metals and their use to approximate Coulomb potentials , 1997 .
[117] D. Langreth,et al. Van Der Waals Interactions In Density Functional Theory , 2007 .
[118] Burke,et al. Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.
[119] D. Langreth,et al. Density Functional for van der Waals Forces at Surfaces. , 1996, Physical review letters.
[120] D. Langreth,et al. Density functional theory including Van Der Waals forces , 1995 .
[121] J. Šponer,et al. Density functional theory and molecular clusters , 1995, Journal of Computational Chemistry.
[122] Marco Häser,et al. Auxiliary basis sets to approximate Coulomb potentials , 1995 .
[123] José M. Pérez-Jordá,et al. A density-functional study of van der Waals forces: rare gas diatomics. , 1995 .
[124] M. Frisch,et al. Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields , 1994 .
[125] Peter Pulay,et al. CAN (SEMI) LOCAL DENSITY FUNCTIONAL THEORY ACCOUNT FOR THE LONDON DISPERSION FORCES , 1994 .
[126] A. Schäfer,et al. Fully optimized contracted Gaussian basis sets of triple zeta valence quality for atoms Li to Kr , 1994 .
[127] A. Becke. Density-functional thermochemistry. III. The role of exact exchange , 1993 .
[128] A. Klamt,et al. COSMO : a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient , 1993 .
[129] M. Waring,et al. Molecular Aspects of Anticancer Drug/DNA Interactions , 1993 .
[130] Gianfranco Vidali,et al. Potentials of physical adsorption , 1991 .
[131] Christopher A. Hunter,et al. The nature of .pi.-.pi. interactions , 1990 .
[132] Norman L. Allinger,et al. Molecular mechanics. The MM3 force field for hydrocarbons. 1 , 1989 .
[133] Hans W. Horn,et al. ELECTRONIC STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS: THE PROGRAM SYSTEM TURBOMOLE , 1989 .
[134] T. H. Dunning. Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen , 1989 .
[135] R. Parr. Density-functional theory of atoms and molecules , 1989 .
[136] A. Becke,et al. Density-functional exchange-energy approximation with correct asymptotic behavior. , 1988, Physical review. A, General physics.
[137] Parr,et al. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. , 1988, Physical review. B, Condensed matter.
[138] C. Ratcliffe,et al. Low-temperature cross-polarization/magic angle spinning carbon-13 NMR of solid methane hydrates: structure, cage occupancy, and hydration number , 1988 .
[139] J. N. Evans,et al. Biosynthesis of porphyrins and corrins. 2. Isolation, purification, and NMR investigations of the porphobilinogen-deaminase covalent complex. , 1986, Biochemistry.
[140] Eamonn F. Healy,et al. Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model , 1985 .
[141] K. Tang,et al. An improved simple model for the van der Waals potential based on universal damping functions for the dispersion coefficients , 1984 .
[142] G. Scoles,et al. Intermolecular forces via hybrid Hartree–Fock–SCF plus damped dispersion (HFD) energy calculations. An improved spherical model , 1982 .
[143] Ch. Seidel,et al. Einführung in die theoretische Chemie. Band 2: Die chemische Bindung. Von W. KUTZELNIGG. Weinheim/New York: Verlag Chemie 1978. XXXI, 594 S., Lwd., DM 98,– , 1979 .
[144] Giacinto Scoles,et al. Intermolecular forces in simple systems , 1977 .
[145] Kazuo Kitaura,et al. A new energy decomposition scheme for molecular interactions within the Hartree‐Fock approximation , 1976 .
[146] John W. Hepburn,et al. A simple but reliable method for the prediction of intermolecular potentials , 1975 .
[147] Keiji Morokuma,et al. Molecular Orbital Studies of Hydrogen Bonds. III. C=O···H–O Hydrogen Bond in H2CO···H2O and H2CO···2H2O , 1971 .
[148] S. F. Boys,et al. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors , 1970 .
[149] H. B. Jansen,et al. Non-empirical molecular orbital calculations on the protonation of carbon monoxide , 1969 .
[150] Henry Margenau,et al. Theory of intermolecular forces , 1969 .
[151] W. Kohn,et al. Self-Consistent Equations Including Exchange and Correlation Effects , 1965 .
[152] P. Hohenberg,et al. Inhomogeneous Electron Gas , 1964 .
[153] W. F. Claussen,et al. A Second Water Structure for Inert Gas Hydrates , 1951 .
[154] M. Plesset,et al. Note on an Approximation Treatment for Many-Electron Systems , 1934 .
[155] F. London,et al. Zur Theorie und Systematik der Molekularkräfte , 1930 .
[156] J. Fritzsche. Ueber die festen Kohlenwasserstoffe des Steinkohlentheers , 1866 .