A rigid network of long-range contacts increases thermostability in a mutant endoglucanase
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Taner Z Sen | Ragothaman M Yennamalli | Andrew K. Harter | A. Rader | R. Sarma | R. Yennamalli | T. Sen | A J Rader | Andrew K Harter
[1] R. Yennamalli,et al. Dynamics of Endoglucanase Catalytic Domains: Implications Towards Thermostability , 2011, Journal of biomolecular structure & dynamics.
[2] Holger Gohlke,et al. Protein rigidity and thermophilic adaptation , 2011, Proteins.
[3] A. Rader,et al. Thermostability in endoglucanases is fold-specific , 2011, BMC Structural Biology.
[4] Andrew K. Harter,et al. Differences in Structural Rigidity between Thermophilic Proteins and their Mesophilic Homologues , 2011 .
[5] A. Rader,et al. Correlating allostery with rigidity. , 2011, Molecular bioSystems.
[6] M. Walkinshaw,et al. Allosteric Mechanism of Pyruvate Kinase from Leishmania mexicana Uses a Rock and Lock Model* , 2010, The Journal of Biological Chemistry.
[7] A. Rader,et al. Thermostability in rubredoxin and its relationship to mechanical rigidity , 2009, Physical biology.
[8] Hepan Tan,et al. Identification of putative, stable binding regions through flexibility analysis of HIV‐1 gp120 , 2009, Proteins.
[9] R. Nussinov,et al. Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms , 2009, Molecular bioSystems.
[10] R. Nussinov,et al. Allostery: absence of a change in shape does not imply that allostery is not at play. , 2008, Journal of molecular biology.
[11] Jeffrey J. Gray,et al. Contact rearrangements form coupled networks from local motions in allosteric proteins , 2008, Proteins.
[12] C. Chennubhotla,et al. Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation. , 2007, Current opinion in structural biology.
[13] J. Shaw,et al. Heat Stability and Allosteric Properties of the Maize Endosperm ADP-Glucose Pyrophosphorylase Are Intimately Intertwined1[OA] , 2007, Plant Physiology.
[14] Vincent B. Chen,et al. MolProbity: all-atom contacts and structure validation for proteins and nucleic acids , 2007, Nucleic Acids Res..
[15] O. Tastan,et al. Comparison of Stability Predictions and Simulated Unfolding of Rhodopsin Structures † , 2007, Photochemistry and photobiology.
[16] Chakra Chennubhotla,et al. Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics , 2006, RECOMB.
[17] Peteris Prusis,et al. Prediction of indirect interactions in proteins , 2006, BMC Bioinformatics.
[18] M. Karplus,et al. The allosteric mechanism of yeast chorismate mutase: a dynamic analysis. , 2006, Journal of molecular biology.
[19] D. Thirumalai,et al. Determination of network of residues that regulate allostery in protein families using sequence analysis , 2005 .
[20] M. Sadeghi,et al. Effective factors in thermostability of thermophilic proteins. , 2006, Biophysical chemistry.
[21] M. Thorpe,et al. Protein flexibility using constraints from molecular dynamics simulations , 2005, Physical biology.
[22] J. Ståhlberg,et al. Structural and biochemical studies of GH family 12 cellulases: improved thermal stability, and ligand complexes. , 2005, Progress in biophysics and molecular biology.
[23] Eugene I Shakhnovich,et al. Physics and evolution of thermophilic adaptation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[24] Adam Godzik,et al. Structural genomics of thermotoga maritima proteins shows that contact order is a major determinant of protein thermostability. , 2005, Structure.
[25] N. Ben-Tal,et al. The ConSurf‐HSSP database: The mapping of evolutionary conservation among homologs onto PDB structures , 2004, Proteins.
[26] R. Nussinov,et al. Is allostery an intrinsic property of all dynamic proteins? , 2004, Proteins.
[27] G. G. Wood,et al. A flexible approach for understanding protein stability , 2004, FEBS letters.
[28] Holger Gohlke,et al. Change in protein flexibility upon complex formation: Analysis of Ras‐Raf using molecular dynamics and a molecular framework approach , 2004, Proteins.
[29] Judith Klein-Seetharaman,et al. Identification of core amino acids stabilizing rhodopsin. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[30] G. G. Wood,et al. Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[31] A. G. Day,et al. Comparison of family 12 glycoside hydrolases and recruited substitutions important for thermal stability , 2003, Protein science : a publication of the Protein Society.
[32] A. Rader,et al. Identifying protein folding cores from the evolution of flexible regions during unfolding. , 2002, Journal of molecular graphics & modelling.
[33] Leslie A Kuhn,et al. Protein unfolding: Rigidity lost , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[34] D. Jacobs,et al. Protein flexibility predictions using graph theory , 2001, Proteins.
[35] T A Jones,et al. The X-ray crystal structure of the Trichoderma reesei family 12 endoglucanase 3, Cel12A, at 1.9 A resolution. , 2001, Journal of molecular biology.
[36] R. Nussinov,et al. Factors enhancing protein thermostability. , 2000, Protein engineering.
[37] R. Ranganathan,et al. Evolutionarily conserved pathways of energetic connectivity in protein families. , 1999, Science.
[38] D Eisenberg,et al. Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability. , 1999, Journal of molecular biology.
[39] G. Böhm,et al. The stability of proteins in extreme environments. , 1998, Current opinion in structural biology.
[40] K. S. Yip,et al. Protein thermostability above 100°C: A key role for ionic interactions , 1998 .
[41] D. Baker,et al. Contact order, transition state placement and the refolding rates of single domain proteins. , 1998, Journal of molecular biology.
[42] V. Tumanyan,et al. Representation of amino acid sequences in terms of interaction energy in protein globules , 1997, FEBS letters.
[43] E. Querol,et al. Analysis of protein conformational characteristics related to thermostability. , 1996, Protein engineering.
[44] G. Böhm,et al. Stabilization of creatinase from Pseudomonas putida by random mutagenesis , 1993, Protein science : a publication of the Protein Society.
[45] B. Matthews,et al. Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme. , 1993, Journal of molecular biology.
[46] R. Jaenicke,et al. Protein stability and molecular adaptation to extreme conditions. , 1991, European journal of biochemistry.
[47] G. Somero,et al. Temperature Adaptation of Enzymes: Biological Optimization Through Structure-Function Compromises , 1978 .
[48] J. Changeux,et al. Allosteric proteins and cellular control systems. , 1963, Journal of molecular biology.
[49] I. Bahar,et al. Folding core predictions from network models of proteins , 2004 .
[50] Gürol M. Süel,et al. Evolutionarily conserved networks of residues mediate allosteric communication in proteins , 2003, Nature Structural Biology.
[51] W. Delano. The PyMOL Molecular Graphics System , 2002 .