Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

Joshua B. Singer | Darren L. Smith | Shane A. McCarthy | Jaime M. Tovar-Corona | Andrew R. Bassett | Gemma L. Kay | James E. Harrison | Ross J. Harris | J. Danesh | J. O’Grady | N. Loman | C. Constantinidou | J. Quick | D. Kwiatkowski | M. Kraemer | Katerina Galai | J. Bonfield | M. Quail | C. Langford | O. Pybus | C. Fraser | I. Martincorena | C. Churcher | S. Ellard | R. Lyons | D. Bonsall | B. Gutiérrez | L. du Plessis | O. Boyd | L. Geidelberg | D. Jorgensen | I. Siveroni | E. Volz | L. Rainbow | L. Baxter | Z. Molnár | Steven Leonard | A. Rambaut | Lesley M Shirley | A. Charlett | A. Presanis | D. De Angelis | T. Nyberg | Kevin Lewis | S. Ott | T. Peto | D. Crook | M. Cronin | M. de Cesare | D. Buck | D. Aanensen | R. Myers | Louise Aigrain | Joana Dias | R. Gregory | S. Seaman | A. Zarebski | Sunando Roy | Rachel J. Williams | J. Hughes | S. Vattipally | Ravindra K. Gupta | C. Illingworth | M. Bashton | A. Awan | R. Orton | M. Lawniczak | J. Stockton | J. Raghwani | M. Loose | M. Kristiansen | S. Glaysher | M. Iturriza-Gómara | S. Mookerjee | A. Holmes | F. Bolt | A. Beggs | Y. Bourgeois | Eleanor Drury | R. Amato | A. Jeffries | S. Michell | M. Holden | C. Ariani | W. Hamilton | A. Trebes | T. Golubchik | D. Eyre | E. Aranday-Cortes | A. da Silva Filipe | C. Holmes | T. Mbisa | E. Thomson | D. Studholme | S. Corden | S. Paterson | S. Haldenby | J. Hiscox | J. Ledesma | A. Lackenby | S. Waugh | Á. O'toole | V. Hill | C. Ruis | M. Parker | C. Evans | T. Freeman | T. D. de Silva | A. Angyal | Rebecca Brown | Luke R. Green | Danielle C. Groves | Katie Johnson | A. Keeley | B. Lindsey | Paul J. Parsons | M. Raza | Nikki Smith | Rachel M. Tucker | Dennis Wang | M. Wyles | B. Temperton | H. Lowe | Mark A Whitehead | M. Hughes | E. Pelosi | E. Wise | A. Davies | S. Rooke | N. Alikhan | S. Nicholls | M. Michelsen | K. Twohig | B. Warne | G. Tonkin-Hill | C. Sambles | A. Lucaci | G. Bucca | A. Hesketh | Colin P. Smith | Ulf Schaefer | S. Rajatileka | A. Alderton | Rachel Nelson | C. Beaver | S. Kidd | H. Hartman | D. Fairley | J. Mckenna | A. Best | Y. Chaudhry | I. Goodfellow | P. Muir | T. Robinson | M. Ramsay | L. de Oliveira Martins | A. Mather | K. Harris | S. Wyllie | C. Auckland | Clive Graham | J. Edgeworth | Amita Patel | L. Bedford | Veena Raviprakash | L. Letchford | Ross J Harris | C. Wierzbicki | R. Munn | D. Rajan | L. Turtle | A. Underwood | S. Elliott | A. Chauhan | A. Makunin | A. Green | Naomi R Park | Kate Cook | A. Page | L. Jackson | J. Prieto | R. Davidson | E. Robinson | G. Eltringham | B. Knight | E. Allara | A. McNally | R. Batra | T. Boswell | W. Smith | L. Berry | J. Mason | P. Baker | David Williams | K. Templeton | Emma Betteridge | N. Redshaw | S. Thurston | Stefanie V. Lensing | I. Johnston | Andrew Whitwham | M. Gemmell | F. Coll | N. Holmes | A. Richter | R. Stark | Leanne Kane | C. Yeats | J. Coombes | I. Harrison | W. Rowe | J. Nichols | T. Charalampous | G. Kay | Alp Aydin | E. Harrison | M. Dorman | M. Bull | Julianne R. Brown | M. Beale | Khalil AbuDahab | D. Grammatopoulos | Ben Taylor | B. Percival | T. Mahungu | K. Williamson | R. Hope | Andrew Nelson | K. Jackson | S. Aliabadi | G. Dabrera | M. Sinnathamby | S. Cottrell | C. Moore | R. Gunson | V. Sivaprakasam | S. Parmar | S. Sridhar | B. Blane | T. Haque | Y. Taha | A. Thornton | I. Georgana | A. Bosworth | I. Bronner | R. Howe | T. Curran | T. Tsoleridis | S. Essex | A. Hale | C. Kitchen | Martyn Guest | K. Saeed | Shazaad Ahmad | T. Vasylyeva | Tim Wyatt | S. Gonçalves | J. Warwick-Dugdale | I. Vipond | D. Bradshaw | N. Machin | N. Cortes | Hannah E. Bridgewater | J. Durham | M. McHugh | C. Ludden | L. Macfarlane-Smith | D. Aggarwal | J. Masoli | A. Marchbank | S. Forrest | Malorie Perry | M. Ragonnet-Cronin | Charlotte Nelson | P. Randell | B. Cogger | W. Yew | N. Storey | M. Maes | D. Jamrozy | V. Chalker | L. Ensell | A. Karamani | L. Williams | M. Hosmillo | Michael John | L. Berry | Patawee Asamaphan | A. Broos | K. Smollett | C. Manso | D. Bibby | E. Barton | Joanne Watts | A. Rowan | G. Macintyre-Cockett | N. Hadjirin | E. Meader | D. Bradley | Robert Beer | D. Robertson | K. Nomikou | A. Cox | B. Payne | A. Maclean | H. Osman | J. Heaney | J. Shepherd | Rajiv Shah | N. Jesudason | Kathy K Li | L. Tong | N. Johnson | Daniel Mair | S. Carmichael | Hannah Dent | S. Dervisevic | N. Craine | M. Andersson | N. Moore | J. Lynch | M. Mori | A. Justice | Julian Tang | S. Miah | M. Unnikrishnan | E. Higginson | T. Connor | Sarah François | N. Ellaby | S. Platt | N. Groves | E. Gallagher | M. Chand | Rebecca Williams | G. Vernet | C. McMurray | M. Morgan | G. Nebbia | J. Collins | S. Bonner | Stephanie H. Lo | J. Todd | P. Bird | R. Dewar | A. Price | S. Robson | J. Singer | E. Wilson-Davies | J. Hartley | C. McKerr | Sharif Shaaban | K. Bicknell | S. Louka | C. Williams | Peijun Zhang | Tranprit Saluja | L. Levett | G. Clark | J. Lopez-Bernal | A. Westhorpe | L. Snell | Sarojini Pandey | Rachel Jones | R. George | B. Samaraweera | A. Mahanama | G. Betancor | Sian Morgan | Thomas Helmer | M. Pinckert | S. Peacock | J. Ball | C. Bresner | S. O'Brien | A. Carabelli | Igor Starinskij | James Price | T. Williams | M. Niebel | M. E. Torok | A. Farbos | L. Fina | S. Moses | L. Graham | R. Blacow | M. Cotic | C. Koshy | S. Rey | T. Sloan | S. Burton-Fanning | J. Breuer | A. Jahun | Christopher Moore | J. Chappell | M. Carlile | Fei Sang | I. Willingham | Amelia Joseph | M. Khakh | V. Fleming | M. Lister | H. Howson-Wells | L. Turtle | C. Cormie | A. Trotter | S. Ahmad | Thanh Le-Viet | Steven J. Rudder | Rachael Stanley | Lizzie Meadows | L. Coupland | G. Hall | Safiah Afifi | Kathryn Mccluggage | Joshua Maksimovic | Karla Spellman | Joel Southgate | R. Eccles | F. Halstead | Chloe Fisher | N. Duckworth | Sarah Walsh | J. Watkins | Alec Birchley | Bree Gatica-Wilcox | L. Gilbert | Sara Kumžiene-Summerhayes | Nicole Pacchiarini | Alexander Adams | Amy Gaskin | Laura Gifford | Johnny Debebe | Steven Liggett | Charlotte Williams | G. Scarlett | K. Loveson | A. Beckett | William Fuller | T. Workman | Sarah Taylor | Robert Johnson | Katherine L. Harper | H. Carden | Stephanie Hutchings | Giri Shankar | S. Goudarzi | A. Darby | P. Brown | Sophia T. Girgis | D. Leek | A. Zaidi | J. Mirza | M. Mayhew | O. Megram | E. Moles-Garcia | L. Crawford | C. Bewshea | F. Flaviani | R. Davies | H. Webster | Chloe Bishop | Christopher H Jackson | K. Oliver | David K Jackson | J. Sillitoe | J. Hubb | A. Signell | H. Wilson | H. Asad | Amy Plimmer | Michael Chapman | R. Livett | N. Reynolds | Thomas D. Stanton | A. Casey | Helen Adams | Minal K Patel | Sally Kay | M. Curran | Hannah L. Paul | S. Thelwall | Amy Ash | M. Hassan-Ibrahim | C. Malone | Michelle Wantoch | Huw Gulliver | I. Merrick | Mirko Menegazzo | Carl Jones | K. Fallon | Sharon Campbell | Nicola Sheriff | Victoria Blakey | Victoria Wright | S. Eldirdiri | A. Kenyon | Thomas Davis | S. Attwood | Marina Escalera Zamudio | Hannah Lowe | Jonathan L Moore | Susanne Stonehouse | J. Boyes | D. Shah | Laura Atkinson | J. Lee | A. Alcolea-Medina | W. Chatterton | Monika Pusok | Li Xu-McCrae | G. Young | Pinglawathee Madona | Fabricia F. Nascimento | G. Taylor | Radoslaw Poplawski | R. Martinez Nunez | E. O'Toole | Cathy Breen | A. Cowell | Graciela Sluga | Wendy Hogsden | P. Asamaphan | Seema Nickbakhsh | S. Rushton | A. Bradley | G. Mollett | Elizabeth Wastenge | Louise Smith | D. Padgett | Garren Scott | E. Swindells | J. Greenaway | C. McCann | Sarah K. Walsh | A. Lloyd | R. Impey | Nick Levene | Lynn Monaghan | C. Pearson | R. Hopes | Hannah M. Pymont | David Lee | Nikos Manesis | Vineet Patel | Chris J Williams | David Heyburn | E. de Lacy | Ember Hilvers | Fatima Downing | Hannah Jones | John Evans | Sophie Jones | Sue Edwards | D. Baker | Liz Ratcliffe | D. Simpson | T. Thompson | Erwan Acheson | Christopher Jones | Dianne Irish-Tavares | J. Hart | Eric Witele | M. Fenton | Ashok Dadrah | Amanda Symmonds | C. Fearn | David Partridge | Siona Silveira | N. Bayzid | Riaz Jannoo | Sarah Jeremiah | K. Jones | F. Ashcroft | Nicola J. Cumley | Harmeet K. Gill | Jamie Young | L. Kermack | Sophie Palmer | E. Brooks | Kim Smith | Georgina M. McManus | R. Davidson | Carlos E. Balcazar | M. Gallagher | R. Manley | Edith E. Vamos | M. Whiteley | M. Gallis | Jeffrey K J Cheng | Lucy R Frost | Grace Taylor-Joyce | M. Alam | A. Cerda | Tamara Merrill | Rebekah Wilson | P. McClure | Katherine L Bellis | Ben Farr | Luke Foulser | S. Goodwin | M. Gourtovaia | J. Keatley | Samantha McGuigan | Steven O. Palmer | Liam J. Prestwood | Christoph Puethe | C. Scott | M. Spencer Chapman | Danni Weldon | Jennifier Liddle | Robin Moll | Keith James | J. Barrett | J. McKenna | Allyson Lloyd | Christopher R. Jones | Ben W. Farr | Robin J. Moll | Martyn F Guest | Julian W. Tang | Kim S. Smith | Jack C. D. Lee | Chris Williams | H. Jones | Helen L. Lowe | Naomi R. Park | A. Patel | D. Groves | Mark Whitehead | Catherine Moore | P. Madona | Joanne Stockton | J. Moore | Rebekah E. Wilson | P. Parsons | Á. O’Toole | E. O’Toole | Katherine L. Bellis | David K. Jackson | Cherian Amy Emma Nathan Matilde Nick Jessica Stephen Derek Koshy Ash Wise Moore Mori Cortes Lynch Ki | Marius Cotic | Lily Tong | Julian W Tang | S. Hutchings | Rachel J. Williams | Steven Rudder | C. Nelson | Jack C D Lee | H. Bridgewater | Harmeet Gill | David L. Robertson | Guy Mollett | Rachel M Blacow | Katherine Smollett | Ana da Silva Filipe | A. Joseph | Ian Harrison | Nazreen F. Hadjirin | Scott A. J. Thurston | Xu-McCrae Li | Stephen Carmichael | S. Nickbakhsh | Karen Oliver | Mailis Maes | J. Hughes | Dorota Jamrozy | Leigh Jackson | Rachel J. Williams | Francesc Coll | John Boyes | Stefan Rooke | Manjinder Khakh | Vicki M. Fleming | Nichola Duckworth | Jonathan Hubb | Katie F. Loveson | Nicola Cumley | Alisha R Davies | Anita O. Lucaci | Cassandra S. Malone | Benjamin J. Cogger | Catherine Bresner | Iona Willingham | Sahar Eldirdiri | Igor Siveroni | Rajiv Shah | Elihu Aranday-Cortes | Brendan A. I. Payne | Adhyana I. K. Mahanama | Buddhini Samaraweera | Adam P. Westhorpe | Helen L Lowe | Angeliki Karamani | C. Bewshea | Jeffrey K. J. Cheng | Lucy R. Frost | Rocio Martinez Nunez | E. Witele | Nicholas M. Redshaw | Jenna Nichols | M. Patel | Tanya Golubchik | Judith Breuer | Darren L. Smith | Jane A. H. Masoli

[1]  R. Myers,et al.  Effectiveness of Covid-19 Vaccines against the B.1.617.2 (Delta) Variant , 2021, The New England journal of medicine.

[2]  Ross J. Harris,et al.  Risk of hospital admission for patients with SARS-CoV-2 variant B.1.1.7: cohort analysis , 2021, BMJ.

[3]  A. Sheikh,et al.  SARS-CoV-2 Delta VOC in Scotland: demographics, risk of hospital admission, and vaccine effectiveness , 2021, The Lancet.

[4]  N. Lennon,et al.  Estimating epidemiologic dynamics from cross-sectional viral load distributions , 2021, Science.

[5]  Manoj Kumar Singh,et al.  Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India , 2021, Science.

[6]  S. Hasnain,et al.  SARS-CoV-2 variants of concern are emerging in India , 2021, Nature Medicine.

[7]  G. Iacobucci Covid-19: Local councils initiate surge vaccination to tackle B.1.617.2 variant , 2021, BMJ.

[8]  H. Mohammed,et al.  Epidemiology of Confirmed COVID-19 Deaths in Adults, England, March–December 2020 , 2021, Emerging infectious diseases.

[9]  J. Mossong,et al.  Characteristics of SARS-CoV-2 variants of concern B.1.1.7, B.1.351 or P.1: data from seven EU/EEA countries, weeks 38/2020 to 10/2021 , 2021, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

[10]  K. Twohig,et al.  Timeliness and completeness of laboratory-based surveillance of COVID-19 cases in England , 2021, Public Health.

[11]  Ira W. Deveson,et al.  Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch , 2021, Wellcome open research.

[12]  Graham W. Taylor,et al.  Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England , 2021, Nature.

[13]  N. Ferguson,et al.  Assessment of Mortality and Hospital Admissions Associated with Confirmed Infection with SARS-CoV-2 Variant of Concern VOC-202012/01 (B.1.1.7) a Matched Cohort and Time-to-Event Analysis , 2021, SSRN Electronic Journal.

[14]  L. Smeeth,et al.  Factors associated with deaths due to COVID-19 versus other causes: population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform , 2021, The Lancet Regional Health - Europe.

[15]  M. Zeegers,et al.  Demographic risk factors for COVID-19 infection, severity, ICU admission and death: a meta-analysis of 59 studies , 2021, BMJ Open.

[16]  Carl A. B. Pearson,et al.  Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England , 2021, Science.

[17]  Emergence of SARS-CoV-2 B.1.617 variants in India and situation in the EU/EEA , 2021 .

[18]  S. Robson,et al.  An integrated national scale SARS-CoV-2 genomic surveillance network , 2020, The Lancet Microbe.

[19]  P. Foster,et al.  Associations with covid-19 hospitalisation amongst 406,793 adults: the UK Biobank prospective cohort study , 2020, medRxiv.

[20]  Pia Hardelid,et al.  Data Resource Profile: Hospital Episode Statistics Admitted Patient Care (HES APC) , 2017, International journal of epidemiology.

[21]  Andy Smith,et al.  CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community , 2016, bioRxiv.