Temporal dynamics of microbiota before and after host death
暂无分享,去创建一个
[1] R. Irizarry. ggplot2 , 2019, Introduction to Data Science.
[2] D. Ebert,et al. Temporal dynamics of microbiota before and after host death , 2018, The ISME Journal.
[3] D. Ebert,et al. The Combined Effect of Temperature and Host Clonal Line on the Microbiota of a Planktonic Crustacean , 2018, Microbial Ecology.
[4] J. Garcia-Gil,et al. Daily thanatomicrobiome changes in soil as an approach of postmortem interval estimation: An ecological perspective. , 2017, Forensic science international.
[5] Rob Knight,et al. Microbiome Tools for Forensic Science. , 2017, Trends in biotechnology.
[6] N. M. Quijada,et al. Dynamics of the oral microbiota as a tool to estimate time since death. , 2017, Molecular oral microbiology.
[7] Nathan H. Lents,et al. A Machine Learning Approach for Using the Postmortem Skin Microbiome to Estimate the Postmortem Interval , 2016, PloS one.
[8] M. Benbow,et al. Microbial ecology of the salmon necrobiome: evidence salmon carrion decomposition influences aquatic and terrestrial insect microbiomes. , 2016, Environmental microbiology.
[9] Matthew J. Gebert,et al. Microbial community assembly and metabolic function during mammalian corpse decomposition , 2016, Science.
[10] D. Ebert,et al. Rethinking “mutualism” in diverse host‐symbiont communities , 2016, BioEssays : news and reviews in molecular, cellular and developmental biology.
[11] E. Decaestecker,et al. Food availability affects the strength of mutualistic host–microbiota interactions in Daphnia magna , 2015, The ISME Journal.
[12] Aaron M. Tarone,et al. Carrion ecology, evolution, and their applications , 2015 .
[13] Rob Knight,et al. Carcass mass has little influence on the structure of gravesoil microbial communities , 2015, International Journal of Legal Medicine.
[14] David O. Carter,et al. Seasonal variation of postmortem microbial communities , 2015, Forensic Science, Medicine, and Pathology.
[15] D. Ebert,et al. Water fleas require microbiota for survival, growth and reproduction , 2014, The ISME Journal.
[16] Rob Knight,et al. Vertebrate Decomposition Is Accelerated by Soil Microbes , 2014, Applied and Environmental Microbiology.
[17] H. Grossart,et al. Zooplankton carcasses and non-predatory mortality in freshwater and inland sea environments , 2014 .
[18] J. Pernthaler,et al. Bacterial epibionts of Daphnia: a potential route for the transfer of dissolved organic carbon in freshwater food webs , 2014, The ISME Journal.
[19] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[20] M. Bustamante,et al. The Prokaryotes , 2014, Springer Berlin Heidelberg.
[21] M. Eric Benbow,et al. Microbial Community Functional Change during Vertebrate Carrion Decomposition , 2013, PloS one.
[22] Sibyl R. Bucheli,et al. The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition , 2013, PloS one.
[23] Matthew J. Gebert,et al. A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system , 2013, eLife.
[24] Robert C. Edgar,et al. UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.
[25] Manuel Serrano,et al. The Hallmarks of Aging , 2013, Cell.
[26] Susan Holmes,et al. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.
[27] A. Kostic,et al. Exploring host-microbiota interactions in animal models and humans. , 2013, Genes & development.
[28] A. Knoll,et al. Animals in a bacterial world, a new imperative for the life sciences , 2013, Proceedings of the National Academy of Sciences.
[29] D. Ebert,et al. A novel approach to parasite population genetics: Experimental infection reveals geographic differentiation, recombination and host‐mediated population structure in Pasteuria ramosa, a bacterial parasite of Daphnia , 2013, Molecular ecology.
[30] J. Raes,et al. Microbial interactions: from networks to models , 2012, Nature Reviews Microbiology.
[31] A. Macpherson,et al. Interactions Between the Microbiota and the Immune System , 2012, Science.
[32] A. Douglas,et al. Impact of the Resident Microbiota on the Nutritional Phenotype of Drosophila melanogaster , 2012, PloS one.
[33] Peng Xing,et al. Characterization of the bacterial community composition in a hypoxic zone induced by Microcystis blooms in Lake Taihu, China. , 2012, FEMS microbiology ecology.
[34] Steven Salzberg,et al. BIOINFORMATICS ORIGINAL PAPER , 2004 .
[35] Jules A Kieser,et al. Marine bacterial succession as a potential indicator of postmortem submersion interval. , 2011, Forensic science international.
[36] B. Schink,et al. Composition and Stability of the Microbial Community inside the Digestive Tract of the Aquatic Crustacean Daphnia magna , 2011, Microbial Ecology.
[37] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[38] J. Lennon,et al. Microbial seed banks: the ecological and evolutionary implications of dormancy , 2011, Nature Reviews Microbiology.
[39] C. Brönmark,et al. Interactions between Predation and Resources Shape Zooplankton Population Dynamics , 2011, PloS one.
[40] Robert A. Edwards,et al. Quality control and preprocessing of metagenomic datasets , 2011, Bioinform..
[41] C. Laforsch,et al. Resolving the infection process reveals striking differences in the contribution of environment, genetics and phylogeny to host-parasite interactions , 2011, BMC Biology.
[42] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[43] Rob Knight,et al. PyNAST: a flexible tool for aligning sequences to a template alignment , 2009, Bioinform..
[44] F. Bushman,et al. QIIME allows integration and analysis of high-throughput community sequencing data. Nat. Meth. , 2010 .
[45] D. Ebert,et al. Intensive fish farming and the evolution of pathogen virulence: the case of columnaris disease in Finland , 2010, Proceedings of the Royal Society B: Biological Sciences.
[46] D. Ebert,et al. Pathogen Dose Infectivity Curves as a Method to Analyze the Distribution of Host Susceptibility: A Quantitative Assessment of Maternal Effects after Food Stress and Pathogen Exposure , 2009, The American Naturalist.
[47] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[48] Adam P. Arkin,et al. FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.
[49] H. Grossart,et al. Microbial activities accompanying decomposition of cladoceran and copepod carcasses under different environmental conditions , 2009 .
[50] D. Ebert,et al. Comparative metagenomics of Daphnia symbionts , 2009, BMC Genomics.
[51] H. Peter,et al. An evaluation of methods to study the gut bacterial community composition of freshwater zooplankton , 2008 .
[52] D. Ebert,et al. The Effects of Multiple Infections on the Expression And Evolution Of Virulence in a Daphnia-Endoparasite System , 2008, Evolution; international journal of organic evolution.
[53] J. Imhoff. The phototrophic Alphaproteobacteria , 2006 .
[54] H. Grossart,et al. Microbial abundance, composition and enzymatic activity during decomposition of copepod carcasses , 2006 .
[55] D. Chessel,et al. From dissimilarities among species to dissimilarities among communities: a double principal coordinate analysis. , 2004, Journal of theoretical biology.
[56] J. Munch,et al. Bacterial Diversity in Agricultural Soils during Litter Decomposition , 2004, Applied and Environmental Microbiology.
[57] M. McFall-Ngai. Unseen forces: the influence of bacteria on animal development. , 2002, Developmental biology.
[58] J. Imhoff. The phototrophic alpha-Proteobacteria , 2001 .
[59] S. Hülsmann,et al. Adult, not juvenile mortality as a major reason for the midsummer decline of a Daphnia population , 2000 .
[60] W. Mooij,et al. Seasonal patterns in the mortality of Daphnia species in a shallow lake , 1996 .
[61] Hans Toni Ratte,et al. ADaM, an artificial freshwater for the culture of zooplankton , 1994 .
[62] P. Grambsch,et al. A Package for Survival Analysis in S , 1994 .
[63] D. R. Mercer,et al. Predator-induced trophic shift of a free-living ciliate: parasitism of mosquito larvae by their prey. , 1988, Science.
[64] Farooq Azam,et al. Major role of bacteria in biogeochemical fluxes in the ocean's interior , 1988, Nature.
[65] G. Harding. Decomposition of marine copepods1 , 1973 .