Multibilayer structure of dimyristoylphosphatidylcholine dihydrate as determined by energy minimization.

Complete energy minimization was carried out on the multibilayer crystal structure of 1,2-dimyristoyl-sn-glycero-3-phosphocholine dihydrate (DMPC.2H2O), starting from the X-ray structure determination reported by Pearson and Pascher (1979) Nature 281, 499-501. The asymmetric unit contains two nonidentical DMPC molecules and four water molecules. Minimization removed the acyl chain disorder present in the X-ray structure and caused the carbon planes of the acyl chains to become mutually parallel. Two energy-minimized structures (structures I and II) were found which mainly differed in the hydrogen-bonding arrangement of the waters of hydration. In structure I as in the X-ray structure, one of the water molecules forms a hydrogen-bonded bridge between successive bilayers; but in structure II, all hydrogen bonds are satisfied on the same bilayer. Structure II corresponds to the global energy minimum and is also a suitable structure for single bilayers. The lattice constants and cell volume of the minimized structures are close to the experimental values. The electrostatic force between DMPC bilayers is attractive. The mean hydration energy of the water is -14.2 kcal/mol, which is 2.5 kcal/mol lower than the binding energy of ice.

[1]  M. Sundaralingam,et al.  Potential energy calculations on phospholipids. Preferred conformations with intramolecular stacking and mutally tilted hydrocarbon chain planes. , 1973, Biochemistry.

[2]  W. S. Benedict,et al.  Rotation‐Vibration Spectra of Deuterated Water Vapor , 1956 .

[3]  L. J. Lis,et al.  Interactions between neutral phospholipid bilayer membranes. , 1982, Biophysical journal.

[4]  B. D. Ladbrooke,et al.  Thermal analysis of lipids, proteins and biological membranes. A review and summary of some recent studies. , 1969, Chemistry and physics of lipids.

[5]  G. Vanderkooi Conformational analysis of phosphatides: Mapping and minimization of the intramolecular energy , 1973 .

[6]  J J Wendoloski,et al.  Molecular dynamics simulation of a phospholipid micelle. , 1989, Science.

[7]  I. Pascher,et al.  Membrane lipids: preferred conformational states and their interplay. The crystal structure of dilauroylphosphatidyl-N,N-dimethylethanolamine , 1986 .

[8]  H. Hauser,et al.  Preferred conformation and molecular packing of phosphatidylethanolamine and phosphatidylcholine. , 1981, Biochimica et biophysica acta.

[9]  H. Scheraga,et al.  Intermolecular potentials from crystal data. 6. Determination of empirical potentials for O-H...O = C hydrogen bonds from packing configurations , 1984 .

[10]  G Büldt,et al.  Neutron diffraction studies on phosphatidylcholine model membranes. I. Head group conformation. , 1979, Journal of molecular biology.

[11]  P. Hitchcock,et al.  A refinement analysis of the crystallography of the phospholipid, 1,2-dilauroyl-DL-phosphatidylethanolamine, and some remarks on lipid—lipid and lipid-protein interactions , 1977, Proceedings of the Royal Society of London. A. Mathematical and Physical Sciences.

[12]  Harold A. Scheraga,et al.  Intermolecular potentials from crystal data. III. Determination of empirical potentials and application to the packing configurations and lattice energies in crystals of hydrocarbons, carboxylic acids, amines, and amides , 1974 .

[13]  A. Darke,et al.  Deuteron magnetic resonance studies of water associated with phospholipids. , 1972, Chemistry and physics of lipids.

[14]  E. Whalley The difference in the intermolecular forces of H2O and D2O , 1957 .

[15]  V. Parsegian,et al.  Physical force considerations in model and biological membranes. , 1984, Canadian journal of biochemistry and cell biology = Revue canadienne de biochimie et biologie cellulaire.

[16]  H. Hauser,et al.  Preferred conformation and dynamics of the glycerol backbone in phospholipids. An NMR and X-ray single-crystal analysis. , 1988, Biochemistry.

[17]  P. Hitchcock,et al.  Structural chemistry of 1,2 dilauroyl-DL-phosphatidylethanolamine: molecular conformation and intermolecular packing of phospholipids. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[18]  P. Bothorel,et al.  Theoretical conformational analysis of phospholipids. I. Study of the interactions between phospholipid molecules by use of semi-empirical methods with the explicit introduction of polar headgroup interactions. , 1983, Biochimica et biophysica acta.

[19]  R. Lochmann,et al.  Quantum‐Chemical and semiclassical calculations of intermolecular interactions of phospholipids , 1979 .

[20]  E Goormaghtigh,et al.  Theoretical conformational analysis of phospholipids bilayers. , 1981, Biochemical and biophysical research communications.

[21]  M. Sundaralihgam DISCUSSION PAPER: MOLECULAR STRUCTURES AND CONFORMATIONS OF THE PHOSPHOLIPIDS AND SPHINGOMYELINS * , 1972, Annals of the New York Academy of Sciences.

[22]  H. Frischleder Quantum-chemical and empirical calculations on phospholipids IV. Glycero-phosphorylethanolamine in a quasihexagonal planar lattice , 1978 .

[23]  T. McIntosh,et al.  Steric repulsion between phosphatidylcholine bilayers. , 1987, Biochemistry.

[24]  H. Scheraga,et al.  Intermolecular potentials from crystal data. 5. Determination of empirical potentials for O-H...O hydrogen bonds from packing configurations and lattice energies of polyhydric alcohols , 1977 .

[25]  H De Loof,et al.  Mean field stochastic boundary molecular dynamics simulation of a phospholipid in a membrane. , 1991, Biochemistry.

[26]  R. M. Williams,et al.  Physical studies of phospholipids. VI. Thermotropic and lyotropic mesomorphism of some 1,2-diacyl-phosphatidylcholines (lecithins) , 1967 .

[27]  H. Hauser,et al.  Glycerol conformation and molecular packing of membrane lipids. The crystal structure of 2,3-dilauroyl-D-glycerol. , 1981, Journal of molecular biology.

[28]  G Büldt,et al.  Neutron diffraction studies on phosphatidylcholine model membranes. II. Chain conformation and segmental disorder. , 1979, Journal of molecular biology.

[29]  R M Venable,et al.  Model for the structure of the lipid bilayer. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[30]  M. Basti,et al.  1H-, 13C- and 31P-NMR studies of dioctanoylphosphatidylcholine and dioctanoylthiophosphatidylcholine. , 1990, Chemistry and physics of lipids.

[31]  R. Pearson,et al.  The molecular structure of lecithin dihydrate , 1979, Nature.

[32]  H. Frischleder Quantum-chemical and empirical calculations on phospholipids. VII. The conformational behaviour of the phosphatidylcholine headgroup in layer systems , 1980 .

[33]  U. Singh,et al.  A NEW FORCE FIELD FOR MOLECULAR MECHANICAL SIMULATION OF NUCLEIC ACIDS AND PROTEINS , 1984 .

[34]  Comparison of energy-minimized crystal structures of 2,3-dilauroyl-D-glycerol, 3-palmitoyl-DL-glycerol-1-phosphorylethanolamine and 1,2-dilauroyl-DL-phosphatidylethanolamine:acetic acid. , 1990, Chemistry and physics of lipids.

[35]  H. Hauser,et al.  Polar group interaction and molecular packing of membrane lipids. The crystal structure of lysophosphatidylethanolamine. , 1981, Journal of molecular biology.

[36]  D. Small The Physical Chemistry of Lipids , 1986 .