Structural Insights into N6-methyladenosine (m6A) Modification in the Transcriptome
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Ping Yin | Jinbo Huang | Jinbo Huang | P. Yin
[1] Chuan He,et al. Ythdc2 is an N6-methyladenosine binding protein that regulates mammalian spermatogenesis , 2017, Cell Research.
[2] Markus Blatter,et al. Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA , 2014, Nucleic acids research.
[3] Ji Wan,et al. m6A Facilitates eIF4F-Independent mRNA Translation. , 2017, Molecular cell.
[4] Chuan He,et al. N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis , 2017, Nature Structural &Molecular Biology.
[5] Chengqi Yi,et al. Epitranscriptome sequencing technologies: decoding RNA modifications , 2016, Nature Methods.
[6] Samie R. Jaffrey,et al. m6A RNA methylation promotes XIST-mediated transcriptional repression , 2016, Nature.
[7] Jun Liu,et al. VIRMA mediates preferential m6A mRNA methylation in 3′UTR and near stop codon and associates with alternative polyadenylation , 2018, Cell Discovery.
[8] Francine E. Garrett-Bakelman,et al. The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal and leukemia cells , 2017, Nature Medicine.
[9] Hwanho Choi,et al. Structure of human RNA N6-methyladenine demethylase ALKBH5 provides insights into its mechanisms of nucleic acid recognition and demethylation , 2014, Nucleic acids research.
[10] Henning Urlaub,et al. Human METTL16 is a N6‐methyladenosine (m6A) methyltransferase that targets pre‐mRNAs and various non‐coding RNAs , 2017, EMBO reports.
[11] Frank Lyko,et al. 5-methylcytosine in RNA: detection, enzymatic formation and biological functions , 2009, Nucleic acids research.
[12] Liang Tong,et al. Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain , 2014, Proceedings of the National Academy of Sciences.
[13] Chuan He,et al. YTHDF3 facilitates translation and decay of N6-methyladenosine-modified RNA , 2017, Cell Research.
[14] K. Somasundaram,et al. mRNA Traffic Control Reviewed: N6‐Methyladenosine (m6A) Takes the Driver's Seat , 2018, BioEssays : news and reviews in molecular, cellular and developmental biology.
[15] Chuan He,et al. YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs , 2017, eLife.
[16] Wolfram Tempel,et al. Structures of Human ALKBH5 Demethylase Reveal a Unique Binding Mode for Specific Single-stranded N6-Methyladenosine RNA Demethylation* , 2014, The Journal of Biological Chemistry.
[17] W. Gilbert,et al. Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells , 2014, Nature.
[18] Yang Shi,et al. Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic Stem Cell Self-Renewal. , 2018, Molecular cell.
[19] Gunter Meister,et al. Interactions, localization, and phosphorylation of the m6A generating METTL3–METTL14–WTAP complex , 2018, RNA.
[20] Stefan Canzar,et al. Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation , 2017, Cell.
[21] Arne Klungland,et al. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. , 2013, Molecular cell.
[22] Chris P. Ponting,et al. The Obesity-Associated FTO Gene Encodes a 2-Oxoglutarate-Dependent Nucleic Acid Demethylase , 2007, Science.
[23] Chuan He,et al. RNA epigenetics--chemical messages for posttranscriptional gene regulation. , 2016, Current opinion in chemical biology.
[24] Michael A McDonough,et al. Role of the jelly-roll fold in substrate binding by 2-oxoglutarate oxygenases. , 2012, Current opinion in structural biology.
[25] Pedro J. Batista. The RNA Modification N6-methyladenosine and Its Implications in Human Disease , 2017, Genom. Proteom. Bioinform..
[26] Ji Wan,et al. N6-Methyladenosine Guides mRNA Alternative Translation during Integrated Stress Response. , 2018, Molecular cell.
[27] Christopher E. Mason,et al. Single-nucleotide resolution mapping of m6A and m6Am throughout the transcriptome , 2015, Nature Methods.
[28] Samie R. Jaffrey,et al. Reading m6A in the Transcriptome: m6A-Binding Proteins. , 2017, Trends in cell biology.
[29] Tao Pan,et al. RNA modifications and structures cooperate to guide RNA–protein interactions , 2017, Nature Reviews Molecular Cell Biology.
[30] Chengqi Yi,et al. N6-Methyladenosine in Nuclear RNA is a Major Substrate of the Obesity-Associated FTO , 2011, Nature chemical biology.
[31] Samir Adhikari,et al. Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase , 2014, Cell Research.
[32] Marco Punta,et al. Structural genomics reveals EVE as a new ASCH/PUA‐related domain , 2009, Proteins.
[33] Lori A. Passmore,et al. Reconstitution of Targeted Deadenylation by the Ccr4-Not Complex and the YTH Domain Protein Mmi1 , 2016, Cell reports.
[34] Ravi Sachidanandam,et al. Regulation of m6A Transcripts by the 3'→5' RNA Helicase YTHDC2 Is Essential for a Successful Meiotic Program in the Mammalian Germline. , 2017, Molecular cell.
[35] Zhike Lu,et al. m6A-dependent regulation of messenger RNA stability , 2013, Nature.
[36] Janusz M. Bujnicki,et al. MODOMICS: a database of RNA modification pathways. 2017 update , 2017, Nucleic Acids Res..
[37] S. Tavazoie,et al. N6-methyladenosine marks primary microRNAs for processing , 2015, Nature.
[38] U. Schibler,et al. Comparison of methylated sequences in messenger RNA and heterogeneous nuclear RNA from mouse L cells. , 1977, Journal of molecular biology.
[39] Chengqi Yi,et al. Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA , 2008, Nature.
[40] Yufei Huang,et al. Viral and Cellular N6-Methyladenosine (m6A) and N6, 2′-O-Dimethyladenosine (m6Am) Epitranscriptomes in KSHV Life Cycle , 2017, Nature Microbiology.
[41] Tianlu Wang,et al. Fluorescein Derivatives as Bifunctional Molecules for the Simultaneous Inhibiting and Labeling of FTO Protein. , 2015, Journal of the American Chemical Society.
[42] Jing Li,et al. Xio is a component of the Drosophila sex determination pathway and RNA N6-methyladenosine methyltransferase complex , 2018, Proceedings of the National Academy of Sciences.
[43] Olivier Elemento,et al. 5 0 UTR m 6 A Promotes Cap-Independent Translation Graphical , 2022 .
[44] Yue Huang,et al. Rhein Inhibits AlkB Repair Enzymes and Sensitizes Cells to Methylated DNA Damage* , 2016, The Journal of Biological Chemistry.
[45] Qiang Wang,et al. Crystal structure of the FTO protein reveals basis for its substrate specificity , 2010, Nature.
[46] Yang Wang,et al. N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells , 2014, Nature Cell Biology.
[47] Chao Xu,et al. A novel RNA-binding mode of the YTH domain reveals the mechanism for recognition of determinant of selective removal by Mmi1 , 2015, Nucleic acids research.
[48] Ke Liu,et al. Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain. , 2014, Nature chemical biology.
[49] James E. Bradner,et al. R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBPA Signaling , 2018, Cell.
[50] Jihui Wu,et al. Structure of the YTH domain of human YTHDF2 in complex with an m6A mononucleotide reveals an aromatic cage for m6A recognition , 2014, Cell Research.
[51] Ye Fu,et al. Nucleic acid modifications with epigenetic significance. , 2012, Current opinion in chemical biology.
[52] Andrew P. Turnbull,et al. Crystal Structures of Three Classes of Non-Steroidal Anti-Inflammatory Drugs in Complex with Aldo-Keto Reductase 1C3 , 2012, PloS one.
[53] Chuan He,et al. m6A Demethylase ALKBH5 Maintains Tumorigenicity of Glioblastoma Stem-like Cells by Sustaining FOXM1 Expression and Cell Proliferation Program. , 2017, Cancer cell.
[54] Edward M Kennedy,et al. Epitranscriptomic Enhancement of Influenza A Virus Gene Expression and Replication. , 2017, Cell host & microbe.
[55] Maxwell R. Mumbach,et al. Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA , 2014, Cell.
[56] M. P. López-Gresa,et al. Arabidopsis m6A demethylase activity modulates viral infection of a plant virus and the m6A abundance in its genomic RNAs , 2017, Proceedings of the National Academy of Sciences.
[57] Yun-Gui Yang,et al. Cytoplasmic m6A reader YTHDF3 promotes mRNA translation , 2017, Cell Research.
[58] Saeed Tavazoie,et al. HNRNPA2B1 Is a Mediator of m6A-Dependent Nuclear RNA Processing Events , 2015, Cell.
[59] Ruiying Zhao,et al. Regulation of embryonic and induced pluripotency by aurora kinase-p53 signaling. , 2012, Cell stem cell.
[60] Pradeep Kumar Yadav,et al. The m6A methyltransferase Ime4 epitranscriptionally regulates triacylglycerol metabolism and vacuolar morphology in haploid yeast cells , 2017, The Journal of Biological Chemistry.
[61] Wanjin Hong,et al. N6-Methyladenosine: a conformational marker that regulates the substrate specificity of human demethylases FTO and ALKBH5 , 2016, Scientific Reports.
[62] Michael A McDonough,et al. Structural basis for inhibition of the fat mass and obesity associated protein (FTO). , 2013, Journal of medicinal chemistry.
[63] Makoto Naito,et al. Identification of Wilms' Tumor 1-associating Protein Complex and Its Role in Alternative Splicing and the Cell Cycle* , 2013, The Journal of Biological Chemistry.
[64] Stepanka Vanacova,et al. N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3′-end processing , 2017, Nucleic acids research.
[65] Martin J Walsh,et al. The N6-Methyladenosine RNA modification in pluripotency and reprogramming. , 2017, Current opinion in genetics & development.
[66] R. Hausinger,et al. Catalytic Mechanisms of Fe(II)- and 2-Oxoglutarate-dependent Oxygenases* , 2015, The Journal of Biological Chemistry.
[67] Matthieu Schapira,et al. Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins* , 2015, The Journal of Biological Chemistry.
[68] Christopher E Mason,et al. ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2 , 2017, bioRxiv.
[69] F. Rottman,et al. Characterization and partial purification of mRNA N6-adenosine methyltransferase from HeLa cell nuclei. Internal mRNA methylation requires a multisubunit complex. , 1994, The Journal of biological chemistry.
[70] Chun Tang,et al. Solution structure of the RNA recognition domain of METTL3-METTL14 N6-methyladenosine methyltransferase , 2018, Protein & Cell.
[71] Olivier Elemento,et al. Reversible methylation of m6Am in the 5′ cap controls mRNA stability , 2016, Nature.
[72] Anton J. Enright,et al. The RNA m6A Reader YTHDF2 Is Essential for the Post-transcriptional Regulation of the Maternal Transcriptome and Oocyte Competence , 2017, Molecular cell.
[73] O. Elemento,et al. Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons , 2012, Cell.
[74] Xuesong Feng,et al. Role of N6-methyladenosine modification in cancer. , 2018, Current opinion in genetics & development.
[75] R. Desrosiers,et al. Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells. , 1974, Proceedings of the National Academy of Sciences of the United States of America.
[76] Eric C. Lai,et al. The m6A pathway facilitates sex determination in Drosophila , 2017, Nature Communications.
[77] F. Rottman,et al. Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase. , 1997, RNA.
[78] Zipora Y. Fligelman,et al. Systematic identification of abundant A-to-I editing sites in the human transcriptome , 2004, Nature Biotechnology.
[79] Qiang Wang,et al. Structural basis of N6-adenosine methylation by the METTL3–METTL14 complex , 2016, Nature.
[80] B. Moss,et al. Nucleotide sequences at the N6-methyladenosine sites of HeLa cell messenger ribonucleic acid. , 1977, Biochemistry.
[81] Salvador Aznar Benitah,et al. Epigenetic control of adult stem cell function , 2016, Nature Reviews Molecular Cell Biology.
[82] Mark Helm,et al. Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA-binding factor Rbm15/Spenito to the m6A machinery component Wtap/Fl(2)d , 2018, Genes & development.
[83] Akane Kawamura,et al. Inhibition of 2‐Oxoglutarate Dependent Oxygenases , 2011 .
[84] Tao Pan,et al. Dynamic RNA Modifications in Gene Expression Regulation , 2017, Cell.
[85] Chuan He,et al. Crystal structure of the RNA demethylase ALKBH5 from zebrafish , 2014, FEBS letters.
[86] Gerald R. Fink,et al. RNA Methylation by the MIS Complex Regulates a Cell Fate Decision in Yeast , 2012, PLoS genetics.
[87] Stefan Hüttelmaier,et al. Recognition of RNA N6-methyladenosine by IGF2BP Proteins Enhances mRNA Stability and Translation , 2018, Nature Cell Biology.
[88] Samie R Jaffrey,et al. Rethinking m6A Readers, Writers, and Erasers. , 2017, Annual review of cell and developmental biology.
[89] Schraga Schwartz,et al. Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites. , 2014, Cell reports.
[90] Chuan He,et al. Our views of dynamic N6-methyladenosine RNA methylation , 2018, RNA.
[91] Samir Adhikari,et al. Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing. , 2016, Molecular cell.
[92] Olivier Elemento,et al. 5′ UTR m6A Promotes Cap-Independent Translation , 2015, Cell.
[93] Shivakumara Bheemanaik,et al. Structure, function and mechanism of exocyclic DNA methyltransferases. , 2006, The Biochemical journal.
[94] M. Jinek,et al. Structural insights into the molecular mechanism of the m(6)A writer complex , 2016 .
[95] Yang Xie,et al. The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention , 2017, Cell.
[96] Schraga Schwartz,et al. High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis , 2013, Cell.
[97] Marc Pignot,et al. Structure of the N6-adenine DNA methyltransferase M•TaqI in complex with DNA and a cofactor analog , 2001, Nature Structural Biology.
[98] Wei Yan,et al. ALKBH5-dependent m6A demethylation controls splicing and stability of long 3′-UTR mRNAs in male germ cells , 2017, Proceedings of the National Academy of Sciences.
[99] B. Moss,et al. N6, O2′-dimethyladenosine a novel methylated ribonucleoside next to the 5′ terminal of animal cell and virus mRNAs , 1975, Nature.
[100] Rong Yin,et al. Roles of RNA methylation by means of N6-methyladenosine (m6A) in human cancers. , 2017, Cancer letters.
[101] Robert B Darnell,et al. Pre-mRNA processing includes N6 methylation of adenosine residues that are retained in mRNA exons and the fallacy of “RNA epigenetics” , 2018, RNA.
[102] Cheng Luo,et al. Development of cell-active N6-methyladenosine RNA demethylase FTO inhibitor. , 2012, Journal of the American Chemical Society.
[103] Xuetao Cao,et al. The RNA helicase DDX46 inhibits innate immunity by entrapping m6A-demethylated antiviral transcripts in the nucleus , 2017, Nature Immunology.
[104] Yun-Gui Yang,et al. N6-methyl-adenosine (m6A) in RNA: An Old Modification with A Novel Epigenetic Function , 2012, Genom. Proteom. Bioinform..
[105] L. Aravind,et al. Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification , 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.
[106] T. Preiss,et al. Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA , 2012, Nucleic acids research.
[107] Chuan He,et al. ALKBH10B Is an RNA N6-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition[OPEN] , 2017, Plant Cell.
[108] Li Li,et al. Readers, writers and erasers of N6-methylated adenosine modification. , 2017, Current opinion in structural biology.
[109] Junwei Shi,et al. Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control , 2017, Nature.
[110] F. Ashcroft,et al. Role for the obesity-related FTO gene in the cellular sensing of amino acids , 2013, Proceedings of the National Academy of Sciences.
[111] Miguel A. Andrade-Navarro,et al. m6A modulates neuronal functions and sex determination in Drosophila , 2016, Nature.
[112] Bing Ren,et al. N6-methyladenosine-dependent regulation of messenger RNA stability , 2013 .
[113] Nathan Archer,et al. m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination , 2016, Nature.
[114] Rong Wang,et al. Coordination of m(6)A mRNA Methylation and Gene Transcription by ZFP217 Regulates Pluripotency and Reprogramming. , 2015, Cell stem cell.
[115] Chengqi Yi,et al. Oxidative demethylation of 3‐methylthymine and 3‐methyluracil in single‐stranded DNA and RNA by mouse and human FTO , 2008, FEBS letters.
[116] Ligang Wu,et al. YTHDF2 destabilizes m6A-containing RNA through direct recruitment of the CCR4–NOT deadenylase complex , 2016, Nature Communications.
[117] Cheng Luo,et al. Meclofenamic acid selectively inhibits FTO demethylation of m6A over ALKBH5 , 2014, Nucleic acids research.
[118] Jernej Ule,et al. The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency , 2018, Nature.
[119] Tingting Zou,et al. Human m6A writers: Two subunits, 2 roles , 2017, RNA biology.
[120] Yi Zhang,et al. TET-mediated active DNA demethylation: mechanism, function and beyond , 2017, Nature Reviews Genetics.
[121] Chuan He,et al. Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing. , 2016, Trends in genetics : TIG.
[122] Elspeth A. Bruford,et al. Genenames.org: the HGNC resources in 2015 , 2014, Nucleic Acids Res..
[123] D. Gomez,et al. Protein universe containing a PUA RNA‐binding domain , 2014, The FEBS journal.
[124] Li Wang,et al. Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine , 2014, Cell Research.
[125] J. Qi,et al. R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBPA Signaling , 2018, Cell.
[126] Ykä Helariutta,et al. Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI , 2017, The New phytologist.
[127] Chengqi Yi,et al. Base-Resolution Mapping Reveals Distinct m1A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts. , 2017, Molecular cell.
[128] Jinhao Xu,et al. Structural insights into the specific recognition of DSR by the YTH domain containing protein Mmi1. , 2017, Biochemical and biophysical research communications.
[129] Samie R Jaffrey,et al. Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1 , 2017, Nature Communications.
[130] Miao Yu,et al. A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation , 2013, Nature chemical biology.
[131] Schraga Schwartz,et al. The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution , 2017, Nature.
[132] Yang Liu,et al. Crystal Structures of the Human RNA Demethylase Alkbh5 Reveal Basis for Substrate Recognition* , 2014, The Journal of Biological Chemistry.
[133] Ryo Iwata,et al. A novel factor Iss10 regulates Mmi1-mediated selective elimination of meiotic transcripts , 2013, Nucleic acids research.
[134] M. Kupiec,et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq , 2012, Nature.
[135] Paul Lehner,et al. Fat mass and obesity-related (FTO) shuttles between the nucleus and cytoplasm , 2014, Bioscience reports.
[136] Marcin Feder,et al. Structure Prediction and Phylogenetic Analysis of a Functionally Diverse Family of Proteins Homologous to the MT-A70 Subunit of the Human mRNA:m6A Methyltransferase , 2002, Journal of Molecular Evolution.
[137] Jie Jin,et al. FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase. , 2017, Cancer cell.
[138] Ping Wang,et al. Structural Basis for Cooperative Function of Mettl3 and Mettl14 Methyltransferases. , 2016, Molecular cell.
[139] Michel Herzog,et al. MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor[W][OA] , 2008, The Plant Cell Online.