Retinoic acid signaling in development: Tissue‐specific functions and evolutionary origins

Retinoic acid (RA) is a vitamin A‐derived morphogen important for axial patterning and organ formation in developing vertebrates and invertebrate chordates (tunicates and cephalochordates). Recent analyses of genomic data have revealed that the molecular components of the RA signaling cascade are also present in other invertebrate groups, such as hemichordates and sea urchins. In this review, we reassess the evolutionary origins of the RA signaling pathway by examining the presence of key factors of this signaling cascade in different metazoan genomes and by comparing tissue‐specific roles for RA during development of different animals. This discussion of genomic and developmental data suggests that RA signaling might have originated earlier in metazoan evolution than previously thought. On the basis of this hypothesis, we conclude by proposing a scenario for the evolution of RA functions during development, which highlights functional gains and lineage‐specific losses during metazoan diversification. genesis 46:640–656, 2008. © 2008 Wiley‐Liss, Inc.

[1]  C. Irving,et al.  Signalling by FGF8 from the isthmus patterns anterior hindbrain and establishes the anterior limit of Hox gene expression. , 2000, Development.

[2]  P. Dollé,et al.  Retinoid signaling in inner ear development. , 2006, Journal of neurobiology.

[3]  H. Gronemeyer,et al.  The retinoic acid signaling pathway regulates anterior/posterior patterning in the nerve cord and pharynx of amphioxus, a chordate lacking neural crest. , 2002, Development.

[4]  C. Burrow Regulatory molecules in kidney development , 2000, Pediatric Nephrology.

[5]  Andrew Lumsden,et al.  Patterning the Vertebrate Neuraxis , 1996, Science.

[6]  P. Chambon,et al.  Physical and Functional Interactions between Cellular Retinoic Acid Binding Protein II and the Retinoic Acid-Dependent Nuclear Complex , 1999, Molecular and Cellular Biology.

[7]  P. Chambon,et al.  Retinoic Acid Controls the Bilateral Symmetry of Somite Formation in the Mouse Embryo , 2005, Science.

[8]  C. Nüsslein-Volhard,et al.  The endoderm plays an important role in patterning the segmented pharyngeal region in zebrafish (Danio rerio). , 2000, Developmental biology.

[9]  V. Prince,et al.  Retinoic Acid Signaling Is Required for a Critical Early Step in Zebrafish Pancreatic Development , 2002, Current Biology.

[10]  M. Donovan,et al.  The cellular retinoic acid binding proteins , 1995, The Journal of Steroid Biochemistry and Molecular Biology.

[11]  Hans Lehrach,et al.  Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica , 2004, Nature.

[12]  C. Tabin The initiation of the limb bud: Growth factors, Hox genes, and retinoids , 1995, Cell.

[13]  V. Matranga,et al.  Effects of retinoic acid and dimethylsulfoxide on the morphogenesis of the sea urchin embryo , 1995, Cell biology international.

[14]  N. Rosenthal,et al.  From the bottom of the heart: anteroposterior decisions in cardiac muscle differentiation. , 2000, Current opinion in cell biology.

[15]  P. Chambon,et al.  Retinoic acid-dependent eye morphogenesis is orchestrated by neural crest cells , 2005, Development.

[16]  K. Storey,et al.  Wnt signals provide a timing mechanism for the FGF-retinoid differentiation switch during vertebrate body axis extension , 2007, Development.

[17]  P. Chambon,et al.  Key roles of retinoic acid receptors alpha and beta in the patterning of the caudal hindbrain, pharyngeal arches and otocyst in the mouse. , 1999, Development.

[18]  M. Baker,et al.  Evolution of the thyroid hormone, retinoic acid, ecdysone and liver X receptors. , 2006, Integrative and comparative biology.

[19]  W. Müller,et al.  Retinoid X receptor and retinoic acid response in the marine sponge Suberites domuncula , 2003, Journal of Experimental Biology.

[20]  P. Chambon,et al.  Retinoic acid receptors and cellular retinoid binding proteins. II. Their differential pattern of transcription during early morphogenesis in mouse embryos. , 1991, Development.

[21]  H. Saiga,et al.  Expression of the labial group Hox gene HrHox-1 and its alteration induced by retinoic acid in development of the ascidian Halocynthia roretzi. , 1995, Development.

[22]  F. Delsuc,et al.  Tunicates and not cephalochordates are the closest living relatives of vertebrates , 2006, Nature.

[23]  P. Chambon,et al.  Genetic and pharmacological evidence that a retinoic acid cannot be the RXR-activating ligand in mouse epidermis keratinocytes. , 2006, Genes & development.

[24]  Qing Nie,et al.  Complex Regulation of cyp26a1 Creates a Robust Retinoic Acid Gradient in the Zebrafish Embryo , 2007, PLoS biology.

[25]  T. Drysdale,et al.  Development of the Xenopus laevis hatching gland and its relationship to surface ectoderm patterning. , 1991, Development.

[26]  L. Wilson,et al.  The role of retinoic acid in the morphogenesis of the neural tube , 2003, Journal of anatomy.

[27]  E. Veitch,et al.  Pharyngeal arch patterning in the absence of neural crest , 1999, Current Biology.

[28]  O. Pourquié,et al.  Retinoic acid coordinates somitogenesis and left–right patterning in vertebrate embryos , 2005, Nature.

[29]  V. Laudet,et al.  Unexpected Novel Relational Links Uncovered by Extensive Developmental Profiling of Nuclear Receptor Expression , 2007, PLoS genetics.

[30]  A. Lacroix,et al.  A novel isoenzyme of aldehyde dehydrogenase specifically involved in the biosynthesis of 9-cis and all-trans retinoic acid. , 1995, The Biochemical journal.

[31]  Denis Duboule,et al.  Localized and Transient Transcription of Hox Genes Suggests a Link between Patterning and the Segmentation Clock , 2001, Cell.

[32]  H. Gronemeyer,et al.  Neofunctionalization in Vertebrates: The Example of Retinoic Acid Receptors , 2006, PLoS genetics.

[33]  R Romero,et al.  Disto-proximal regional determination and intercalary regeneration in planarians, revealed by retinoic acid induced disruption of regeneration. , 2001, The International journal of developmental biology.

[34]  J. Deschamps Ancestral and recently recruited global control of the Hox genes in development. , 2007, Current opinion in genetics & development.

[35]  P. Chambon,et al.  Retinoic acid is required in the mouse embryo for left-right asymmetry determination and heart morphogenesis. , 1999, Development.

[36]  P. Chambon,et al.  Retinoic acid synthesis and hindbrain patterning in the mouse embryo. , 2000, Development.

[37]  Olivier Pourquié,et al.  FGF Signaling Controls Somite Boundary Position and Regulates Segmentation Clock Control of Spatiotemporal Hox Gene Activation , 2001, Cell.

[38]  Anne Grapin-Botton,et al.  Signals from lateral plate mesoderm instruct endoderm toward a pancreatic fate. , 2003, Developmental biology.

[39]  Y. Passamaneck,et al.  Ciona intestinalis: Chordate development made simple , 2005, Developmental dynamics : an official publication of the American Association of Anatomists.

[40]  G. Duester,et al.  Retinoic-acid signalling in node ectoderm and posterior neural plate directs left–right patterning of somitic mesoderm , 2006, Nature Cell Biology.

[41]  K. Storey,et al.  Opposing FGF and retinoid pathways: a signalling switch that controls differentiation and patterning onset in the extending vertebrate body axis , 2004, BioEssays : news and reviews in molecular, cellular and developmental biology.

[42]  J. Postlethwait,et al.  Is retinoic acid genetic machinery a chordate innovation? , 2006, Evolution & development.

[43]  A. Graham,et al.  Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes. , 2005, Developmental biology.

[44]  O. Pourquié,et al.  Coupling segmentation to axis formation , 2004, Development.

[45]  C. Lieber,et al.  Retinol forms retinoic acid via retinal. , 1992, Archives of biochemistry and biophysics.

[46]  S. Fujiwara Retinoids and nonvertebrate chordate development. , 2006, Journal of neurobiology.

[47]  P. Chambon,et al.  Retinoid signaling is essential for patterning the endoderm of the third and fourth pharyngeal arches. , 2000, Development.

[48]  D M Noden,et al.  The role of the neural crest in patterning of avian cranial skeletal, connective, and muscle tissues. , 1983, Developmental biology.

[49]  J. Farrés,et al.  Physiological substrates for rat alcohol dehydrogenase classes: aldehydes of lipid peroxidation, omega-hydroxyfatty acids, and retinoids. , 1993, Archives of biochemistry and biophysics.

[50]  M. J. Coon,et al.  Role of isozymes of rabbit microsomal cytochrome P-450 in the metabolism of retinoic acid, retinol, and retinal. , 1992, Molecular pharmacology.

[51]  P. Chambon,et al.  Tissue-specific expression of retinoic acid receptor isoform transcripts in the mouse embryo , 2000, Mechanisms of Development.

[52]  P. Gruss,et al.  RARγ and Cdx1 Interactions in Vertebral Patterning , 2001 .

[53]  F. Rijli,et al.  Retinoic acid and hindbrain patterning. , 2006, Journal of neurobiology.

[54]  V. Hinman,et al.  Homeobox Genes, Retinoic Acid and the Development and Evolution of Dual Body Plans in the Ascidian Herdmania curvata1 , 2001 .

[55]  N. Hirokawa,et al.  FGF-induced vesicular release of Sonic hedgehog and retinoic acid in leftward nodal flow is critical for left–right determination , 2005, Nature.

[56]  J. L. Napoli Retinoic acid: its biosynthesis and metabolism. , 1999, Progress in nucleic acid research and molecular biology.

[57]  R. Krumlauf,et al.  Hox genes, neural crest cells and branchial arch patterning. , 2001, Current opinion in cell biology.

[58]  C. Kintner,et al.  Regulation of segmental patterning by retinoic acid signaling during Xenopus somitogenesis. , 2004, Developmental cell.

[59]  B. E. Haskell,et al.  Effect of retinoic acid on nerve growth factor receptors , 2004, Cell and Tissue Research.

[60]  J. Xavier-Neto,et al.  Retinoid signaling and cardiac anteroposterior segmentation , 2001, Genesis.

[61]  H. Hendriks,et al.  Retinoic acid causes an anteroposterior transformation in the developing central nervous system , 1989, Nature.

[62]  R. W. Yost,et al.  Esterification by rat liver microsomes of retinol bound to cellular retinol-binding protein. , 1988, The Journal of biological chemistry.

[63]  R. Blomhoff,et al.  A robust characterization of retinoic acid response elements based on a comparison of sites in three species , 2005, The Journal of Steroid Biochemistry and Molecular Biology.

[64]  M. Solursh,et al.  A concentration gradient of retinoids in the early Xenopus laevis embryo. , 1994, Developmental biology.

[65]  P. Chambon,et al.  Function of retinoid nuclear receptors: lessons from genetic and pharmacological dissections of the retinoic acid signaling pathway during mouse embryogenesis. , 2006, Annual review of pharmacology and toxicology.

[66]  H. Saiga,et al.  Retinoic acid affects patterning along the anterior–posterior axis of the ascidian embryo , 1998, Development, growth & differentiation.

[67]  F. Dilworth,et al.  cDNA Cloning of Human Retinoic Acid-metabolizing Enzyme (hP450RAI) Identifies a Novel Family of Cytochromes P450 (CYP26)* , 1997, The Journal of Biological Chemistry.

[68]  P. Chambon,et al.  The retinoic acid-metabolizing enzyme, CYP26A1, is essential for normal hindbrain patterning, vertebral identity, and development of posterior structures. , 2001, Genes & development.

[69]  I. Kostetskii,et al.  Vitamin A-deficient quail embryos have half a hindbrain and other neural defects , 1996, Current Biology.

[70]  P. Hopkins Limb Regeneration in the Fiddler Crab, Uca pugilator: Hormonal and Growth Factor Control1 , 2001 .

[71]  K. Shim,et al.  Control of Drosophila retinoid and fatty acid binding glycoprotein expression by retinoids and retinoic acid: northern, western and immunocytochemical analyses. , 1997, Experimental eye research.

[72]  N. Papalopulu,et al.  A posteriorising factor, retinoic acid, reveals that anteroposterior patterning controls the timing of neuronal differentiation in Xenopus neuroectoderm. , 1996, Development.

[73]  P. Ping,et al.  A Membrane Receptor for Retinol Binding Protein Mediates Cellular Uptake of Vitamin A , 2007, Science.

[74]  A. McMahon,et al.  The cdx Genes and Retinoic Acid Control the Positioning and Segmentation of the Zebrafish Pronephros , 2007, PLoS genetics.

[75]  P. Chambon,et al.  Retinoic acid-induced developmental defects are mediated by RARβ/RXR heterodimers in the pharyngeal endoderm , 2003, Development.

[76]  L. Wilson,et al.  Retinoic acid and the control of dorsoventral patterning in the avian spinal cord. , 2004, Developmental biology.

[77]  P. Chambon,et al.  Embryonic retinoic acid synthesis is essential for early mouse post-implantation development , 1999, Nature Genetics.

[78]  V. Laudet,et al.  A retinoic acid-Hox hierarchy controls both anterior/posterior patterning and neuronal specification in the developing central nervous system of the cephalochordate amphioxus. , 2006, Developmental biology.

[79]  F. Voon,et al.  The effects of retinoic acid on heart formation in the early chick embryo. , 1991, Development.

[80]  Lammer Ej,et al.  Retinoic Acid Embryopathy , 1985 .

[81]  U. Dräger,et al.  Dorsal and ventral retinal territories defined by retinoic acid synthesis, break-down and nuclear receptor expression , 1999, Mechanisms of Development.

[82]  G. Duester,et al.  RALDH3, a retinaldehyde dehydrogenase that generates retinoic acid, is expressed in the ventral retina, otic vesicle and olfactory pit during mouse development , 2000, Mechanisms of Development.

[83]  J. Vellis,et al.  Retinoids increase perinatal spinal cord neuronal survival and astroglial differentiation , 1990, International Journal of Developmental Neuroscience.

[84]  M. Highland,et al.  Vitamin A deficiency results in the dose-dependent acquisition of anterior character and shortening of the caudal hindbrain of the rat embryo. , 2000, Developmental biology.

[85]  M. Maden,et al.  The control of morphogen signalling: regulation of the synthesis and catabolism of retinoic acid in the developing embryo. , 2005, Developmental biology.

[86]  A. Graham,et al.  Deficits in the posterior pharyngeal endoderm in the absence of retinoids , 2002, Developmental dynamics : an official publication of the American Association of Anatomists.

[87]  T. Lepage,et al.  Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo. , 2004, Developmental cell.

[88]  R. Creton,et al.  Specific Developmental Defects in Molluscs after Treatment with Retinoic Acid during Gastrulation , 1993, Development, growth & differentiation.

[89]  T. Hurley,et al.  Catalytic efficiency of human alcohol dehydrogenases for retinol oxidation and retinal reduction. , 1994, Alcoholism, clinical and experimental research.

[90]  William R. Jeffery,et al.  Migratory neural crest-like cells form body pigmentation in a urochordate embryo , 2004, Nature.

[91]  J. Joly,et al.  Neurogenic and non-neurogenic placodes in ascidians. , 2004, Journal of experimental zoology. Part B, Molecular and developmental evolution.

[92]  A. Getahun,et al.  Graded retinoid responses in the developing hindbrain , 1998, Developmental dynamics : an official publication of the American Association of Anatomists.

[93]  M. Maden Retinoid signalling in the development of the central nervous system , 2002, Nature Reviews Neuroscience.

[94]  M. Zile,et al.  Hindbrain respecification in the retinoid-deficient quail , 1999, Mechanisms of Development.

[95]  W. Müller Retinoids and pattern formation in a hydroid. , 1984, Journal of embryology and experimental morphology.

[96]  U. Dräger,et al.  Restricted expression and retinoic acid-induced downregulation of the retinaldehyde dehydrogenase type 2 (RALDH-2) gene during mouse development , 1997, Mechanisms of Development.

[97]  U. Boni,et al.  Enhanced neuronal regeneration by retinoic acid of murine dorsal root ganglia and of fetal murine and human spinal cord in vitro , 2007, In Vitro Cellular & Developmental Biology - Animal.

[98]  G. Spencer,et al.  Retinoic acid induces neurite outgrowth and growth cone turning in invertebrate neurons. , 2006, Developmental biology.

[99]  G. Duester Involvement of Alcohol Dehydrogenase, Short-Chain Dehydrogenase/Reductase, Aldehyde Dehydrogenase, and Cytochrome P450 in the Control of Retinoid Signaling by Activation of Retinoic Acid Synthesis† , 1996 .

[100]  T. Pieler,et al.  Retinoic acid-mediated patterning of the pre-pancreatic endoderm in Xenopus operates via direct and indirect mechanisms , 2007, Mechanisms of Development.

[101]  P. Chambon,et al.  Retinoic acid signalling in the development of branchial arches. , 2004, Current opinion in genetics & development.

[102]  Y. Kohara,et al.  Axial patterning in cephalochordates and the evolution of the organizer , 2007, Nature.

[103]  M. Clagett-Dame,et al.  All‐trans retinoic acid stimulates and maintains neurite outgrowth in nerve growth factor‐supported developing chick embryonic sympathetic neurons , 1996, Developmental dynamics : an official publication of the American Association of Anatomists.

[104]  T. Lepage,et al.  Left-right asymmetry in the sea urchin embryo is regulated by nodal signaling on the right side. , 2005, Developmental cell.

[105]  H. Sive,et al.  Regulation of the Xenopus labial homeodomain genes, HoxA1 and HoxD1: activation by retinoids and peptide growth factors. , 1995, Developmental biology.

[106]  N. Satoh,et al.  Retinoic acid affects gene expression and morphogenesis without upregulating the retinoic acid receptor in the ascidian Ciona intestinalis , 2003, Mechanisms of Development.

[107]  S. Aizawa,et al.  Rostral truncation of a cyclostome, Lampetra japonica, induced by all‐trans retinoic acid defines the head/trunk interface of the vertebrate body , 1998, Developmental dynamics : an official publication of the American Association of Anatomists.

[108]  E. Davidson,et al.  Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus. , 2006, Developmental biology.

[109]  N. Rosenthal,et al.  A retinoic acid-inducible transgenic marker of sino-atrial development in the mouse heart. , 1999, Development.

[110]  Emily Gale,et al.  Retinoic acid signalling centres in the avian embryo identified by sites of expression of synthesising and catabolising enzymes , 2003, Developmental dynamics : an official publication of the American Association of Anatomists.

[111]  I. Söderhäll,et al.  Characterization of a hemocyte intracellular fatty acid‐binding protein from crayfish (Pacifastacus leniusculus) and shrimp (Penaeus monodon) , 2006, The FEBS journal.

[112]  T. Jessell,et al.  Retinoid Receptor Signaling in Postmitotic Motor Neurons Regulates Rostrocaudal Positional Identity and Axonal Projection Pattern , 2003, Neuron.

[113]  David Q. Matus,et al.  Broad phylogenomic sampling improves resolution of the animal tree of life , 2008, Nature.

[114]  J. Piatigorsky,et al.  Retinoic acid X receptor in the diploblast, Tripedalia cystophora. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[115]  B. Swalla,et al.  Nodal signaling and the evolution of deuterostome gastrulation , 2005, Developmental dynamics : an official publication of the American Association of Anatomists.

[116]  D. Hough,et al.  An rxr/usp homolog from the parasitic nematode, Dirofilaria immitis. , 2004, Gene.

[117]  M. Okuyama,et al.  Outgrowth of pseudopodial cables induced by all‐trans retinoic acid in micromere‐derived cells isolated from sea urchin embryos , 1999, Development, growth & differentiation.

[118]  V. Laudet,et al.  Retinoic acid signaling and the evolution of chordates , 2006, International journal of biological sciences.

[119]  Vincent Laudet,et al.  Principles for modulation of the nuclear receptor superfamily , 2004, Nature Reviews Drug Discovery.

[120]  J. Richman,et al.  Locally released retinoic acid repatterns the first branchial arch cartilages in vivo. , 2000, Developmental biology.

[121]  C. Sharpe,et al.  Retinoid receptors promote primary neurogenesis in Xenopus. , 1997, Development.

[122]  P. Chambon A decade of molecular biology of retinoic acid receptors , 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[123]  P. Chambon,et al.  Retinoic acid receptors and cellular retinoid binding proteins. I. A systematic study of their differential pattern of transcription during mouse organogenesis. , 1990, Development.

[124]  M. Zhang,et al.  Mouse Retinal Dehydrogenase 4 (RALDH4), Molecular Cloning, Cellular Expression, and Activity in 9-cis-Retinoic Acid Biosynthesis in Intact Cells* , 2003, The Journal of Biological Chemistry.

[125]  S. Wasiak,et al.  Retinoic acid affects left-right patterning. , 1999, Developmental biology.

[126]  V. Dupé,et al.  Hindbrain patterning involves graded responses to retinoic acid signalling. , 2001, Development.

[127]  R. Krumlauf,et al.  Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head , 2000, Nature.

[128]  J. Denucé Teratogene und metamorphosehemmende Wirkung von Retinsäure in Ciona intestinalis / Teratogenic and Metamorphosis-Inhibiting Activity of Retinoic Acid in Ciona intestinalis , 1991, Zeitschrift für Naturforschung C - A Journal of Biosciences.

[129]  L. Holland,et al.  Expression of AmphiHox-1 and AmphiPax-1 in amphioxus embryos treated with retinoic acid: insights into evolution and patterning of the chordate nerve cord and pharynx. , 1996, Development.

[130]  N. Takahashi,et al.  Retinoylation of proteins in mammalian cells. , 1996, Biochemical Society transactions.

[131]  V. Hinman,et al.  Retinoic acid perturbs Otx gene expression in the ascidian pharynx , 2000, Development Genes and Evolution.

[132]  H. Weintraub,et al.  Identification of a retinoic acid-sensitive period during primary axis formation in Xenopus laevis. , 1990, Genes & development.

[133]  V. Laudet,et al.  Retinoic acid signaling acts via Hox1 to establish the posterior limit of the pharynx in the chordate amphioxus , 2004, Development.

[134]  B. Shroot,et al.  The role of retinoic acid receptors in neurite outgrowth from different populations of embryonic mouse dorsal root ganglia. , 2000, Journal of cell science.

[135]  N. Satoh,et al.  Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[136]  P. Ingham,et al.  The zebrafish neckless mutation reveals a requirement for raldh2 in mesodermal signals that pattern the hindbrain. , 2001, Development.

[137]  L. Wilson,et al.  RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1 , 2007, Development.

[138]  M. D. Stokes,et al.  Three amphioxus Wnt genes (AmphiWnt3, AmphiWnt5, and AmphiWnt6) associated with the tail bud: the evolution of somitogenesis in chordates. , 2001, Developmental biology.

[139]  U. Dräger,et al.  Retinoids in embryonal development. , 2000, Physiological reviews.

[140]  A. Kligman The treatment of acne with topical retinoids: one man's opinions. , 1997, Journal of the American Academy of Dermatology.

[141]  V. Hinman,et al.  Retinoic acid disrupts anterior ectodermal and endodermal development in ascidian larvae and postlarvae , 1998, Development Genes and Evolution.

[142]  V. Laudet,et al.  Amphioxus and tunicates as evolutionary model systems. , 2006, Trends in ecology & evolution.

[143]  A Graham,et al.  Patterning the pharyngeal arches , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[144]  C. Chuong The making of a feather: Homeoproteins, retinoids and adhesion molecules , 1993, BioEssays : news and reviews in molecular, cellular and developmental biology.

[145]  S. Guthrie,et al.  Somatic motoneurone specification in the hindbrain: the influence of somite-derived signals, retinoic acid and Hoxa3 , 2003, Development.

[146]  Concepción Rodríguez-Esteban,et al.  Multiple left-right asymmetry defects in Shh(-/-) mutant mice unveil a convergence of the shh and retinoic acid pathways in the control of Lefty-1. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[147]  G. Duester,et al.  Retinoid activation of retinoic acid receptor but not retinoid X receptor is sufficient to rescue lethal defect in retinoic acid synthesis , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[148]  R. Borojevic,et al.  Retinoic acid acts as a morphogen in freshwater sponges , 1994 .

[149]  A. LaMantia,et al.  Disruption of local retinoid‐mediated gene expression accompanies abnormal development in the mammalian olfactory pathway , 1997, The Journal of comparative neurology.

[150]  E. Sonneveld,et al.  The distribution of endogenous retinoic acid in the chick embryo: implications for developmental mechanisms. , 1998, Development.

[151]  J. Postlethwait,et al.  Evolutionary developmental biology and genomics , 2007, Nature Reviews Genetics.

[152]  B. Hall,et al.  The neural crest as a fourth germ layer and vertebrates as quadroblastic not triploblastic , 2000, Evolution & development.

[153]  Mark P. Styczynski,et al.  BLOSUM62 miscalculations improve search performance , 2008, Nature Biotechnology.

[154]  A. Ross,et al.  Cloning of rat cytochrome P450RAI (CYP26) cDNA and regulation of its gene expression by all-trans-retinoic acid in vivo. , 2002, Archives of biochemistry and biophysics.

[155]  H. Wichterle,et al.  A Requirement for Retinoic Acid-Mediated Transcriptional Activation in Ventral Neural Patterning and Motor Neuron Specification , 2003, Neuron.

[156]  Emily Gale,et al.  Opposing FGF and Retinoid Pathways Control Ventral Neural Pattern, Neuronal Differentiation, and Segmentation during Body Axis Extension , 2003, Neuron.

[157]  S. Guthrie,et al.  Patterning of motor neurons by retinoic acid in the chick embryo hindbrain in vitro , 2003, Molecular and Cellular Neuroscience.

[158]  Á. Raya,et al.  Retinoic acid signalling links left–right asymmetric patterning and bilaterally symmetric somitogenesis in the zebrafish embryo , 2005, Nature.

[159]  K. Yagi,et al.  Retinoic acid differently affects the formation of palps and surrounding neurons in the ascidian tadpole , 2002, Development Genes and Evolution.

[160]  A. Bonnieu,et al.  Retinoic acid activates myogenesis in vivo through Fgf8 signalling. , 2006, Developmental biology.

[161]  P. Prinos,et al.  Retinoic Acid Regulation of Cdx1: an Indirect Mechanism for Retinoids and Vertebral Specification , 2000, Molecular and Cellular Biology.

[162]  P. Chambon,et al.  Retinoic acid metabolism and signaling pathways in the adult and developing mouse testis. , 2006, Endocrinology.

[163]  S. Fujiwara,et al.  Expression of Raldh2, Cyp26 and Hox-1 in normal and retinoic acid-treated Ciona intestinalis embryos. , 2003, Gene expression patterns : GEP.

[164]  J. Xavier-Neto,et al.  The evolutionary origin of cardiac chambers. , 2005, Developmental biology.

[165]  J. Postlethwait,et al.  Development of a chordate anterior-posterior axis without classical retinoic acid signaling. , 2007, Developmental biology.

[166]  U. Dräger,et al.  Differential distribution of retinoic acid synthesis in the chicken embryo as determined by immunolocalization of the retinoic acid synthetic enzyme, RALDH-2. , 1999, Developmental biology.

[167]  R. Blomhoff,et al.  Gene expression regulation by retinoic acid Published, JLR Papers in Press, August 16, 2002. DOI 10.1194/jlr.R100015-JLR200 , 2002, Journal of Lipid Research.

[168]  L. Margaretha,et al.  Cyp26 enzymes generate the retinoic acid response pattern necessary for hindbrain development , 2007, Development.

[169]  R. Krumlauf,et al.  Retinoic acid alters hindbrain Hox code and induces transformation of rhombomeres 2/3 into a 4/5 identity , 1992, Nature.

[170]  Rune Blomhoff,et al.  Overview of retinoid metabolism and function. , 2006, Journal of neurobiology.

[171]  P. Chambon,et al.  Genetic evidence that oxidative derivatives of retinoic acid are not involved in retinoid signaling during mouse development , 2002, Nature Genetics.

[172]  M. J. Coon,et al.  Metabolism of all-trans, 9-cis, and 13-cis isomers of retinal by purified isozymes of microsomal cytochrome P450 and mechanism-based inhibition of retinoid oxidation by citral. , 1996, Molecular pharmacology.

[173]  M. Fishman,et al.  Patterning the zebrafish heart tube: acquisition of anteroposterior polarity. , 1992, Developmental biology.

[174]  M. Lanotte,et al.  Identification of human cytochrome P450s involved in the formation of all-trans-retinoic acid principal metabolites. , 2000, Molecular pharmacology.

[175]  G. Morriss-Kay,et al.  Exposure to retinoic acid before or after the onset of somitogenesis reveals separate effects on rhombomeric segmentation and 3' HoxB gene expression domains. , 1994, Development.

[176]  G. Schlosser Evolutionary origins of vertebrate placodes: insights from developmental studies and from comparisons with other deuterostomes. , 2005, Journal of experimental zoology. Part B, Molecular and developmental evolution.

[177]  J. Xavier-Neto,et al.  The search for non-chordate retinoic acid signaling: lessons from chordates. , 2008, Journal of experimental zoology. Part B, Molecular and developmental evolution.

[178]  N. Rosenthal,et al.  A caudorostral wave of RALDH2 conveys anteroposterior information to the cardiac field , 2003, Development.

[179]  E. Nikko,et al.  Retinoic acid down-regulates the expression of EmH-3 homeobox-containing gene in the freshwater sponge Ephydatia muelleri , 2001, Mechanisms of Ageing and Development.

[180]  F. Rijli,et al.  Segmental development of reticulospinal and branchiomotor neurons in lamprey: insights into the evolution of the vertebrate hindbrain , 2004, Development.

[181]  H. Okamoto,et al.  Retinoic acid-metabolizing enzyme Cyp26a1 is essential for determining territories of hindbrain and spinal cord in zebrafish. , 2005, Developmental biology.

[182]  V. Laudet,et al.  Conserved RARE localization in amphioxus Hox clusters and implications for Hox code evolution in the vertebrate neural crest , 2006, Developmental dynamics : an official publication of the American Association of Anatomists.

[183]  J. Postlethwait,et al.  Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages , 2008, BMC Biology.

[184]  C. Manthey,et al.  Identification of mouse liver aldehyde dehydrogenases that catalyze the oxidation of retinaldehyde to retinoic acid. , 1991, Biochemical pharmacology.

[185]  B. Roe,et al.  Cloning of crustacean ecdysteroid receptor and retinoid-X receptor gene homologs and elevation of retinoid-X receptor mRNA by retinoic acid , 1998, Molecular and Cellular Endocrinology.

[186]  R. Northcutt,et al.  Retinoic acid repatterns axolotl lateral line receptors. , 2004, The International journal of developmental biology.

[187]  V. Laudet,et al.  Retinoic acid influences anteroposterior positioning of epidermal sensory neurons and their gene expression in a developing chordate (amphioxus). , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[188]  D. Melton,et al.  Pancreas specification: a budding question. , 2003, Current opinion in genetics & development.

[189]  L. Wolpert From egg to adult to larva , 1999, Evolution & development.

[190]  Sarah J. Bourlat,et al.  Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida , 2006, Nature.

[191]  Jean-Paul Renaud,et al.  Crystal structure of the RAR-γ ligand-binding domain bound to all-trans retinoic acid , 1995, Nature.