A Pictet-Spengler ligation for protein chemical modification

Aldehyde- and ketone-functionalized proteins are appealing substrates for the development of chemically modified biotherapeutics and protein-based materials. Their reactive carbonyl groups are typically conjugated with α-effect nucleophiles, such as substituted hydrazines and alkoxyamines, to generate hydrazones and oximes, respectively. However, the resulting C=N linkages are susceptible to hydrolysis under physiologically relevant conditions, which limits the utility of such conjugates in biological systems. Here we introduce a Pictet-Spengler ligation that is based on the classic Pictet-Spengler reaction of aldehydes and tryptamine nucleophiles. The ligation exploits the bioorthogonal reaction of aldehydes and alkoxyamines to form an intermediate oxyiminium ion; this intermediate undergoes intramolecular C–C bond formation with an indole nucleophile to form an oxacarboline product that is hydrolytically stable. We used the reaction for site-specific chemical modification of glyoxyl- and formylglycine-functionalized proteins, including an aldehyde-tagged variant of the therapeutic monoclonal antibody Herceptin. In conjunction with techniques for site-specific introduction of aldehydes into proteins, the Pictet-Spengler ligation offers a means to generate stable bioconjugates for medical and materials applications.

[1]  E. Winer,et al.  A phase II study of trastuzumab emtansine in patients with human epidermal growth factor receptor 2-positive metastatic breast cancer who were previously treated with trastuzumab, lapatinib, an anthracycline, a taxane, and capecitabine. , 2012, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[2]  Peter G Schultz,et al.  Synthesis of bispecific antibodies using genetically encoded unnatural amino acids. , 2012, Journal of the American Chemical Society.

[3]  M. Distefano,et al.  Chemoenzymatic reversible immobilization and labeling of proteins without prior purification. , 2012, Journal of the American Chemical Society.

[4]  Carolyn R Bertozzi,et al.  Synthesis of Heterobifunctional Protein Fusions Using Copper-Free Click Chemistry and the Aldehyde Tag , 2012, Angewandte Chemie.

[5]  M. Sliwkowski,et al.  Conjugation site modulates the in vivo stability and therapeutic activity of antibody-drug conjugates , 2012, Nature Biotechnology.

[6]  N. Stephanopoulos,et al.  Choosing an effective protein bioconjugation strategy. , 2011, Nature chemical biology.

[7]  E. Jacobsen,et al.  Thiourea-catalyzed enantioselective iso-Pictet-Spengler reactions. , 2011, Organic letters.

[8]  Herbert Waldmann,et al.  The Pictet-Spengler reaction in nature and in organic chemistry. , 2011, Angewandte Chemie.

[9]  C. Bertozzi,et al.  Protein Glycoengineering Enabled by the Versatile Synthesis of Aminooxy Glycans and the Genetically Encoded Aldehyde Tag , 2011, Journal of the American Chemical Society.

[10]  T. Keller,et al.  Indium mediated allylation in peptide and protein functionalization. , 2011, Chemical communications.

[11]  B. E. Kimmel,et al.  Optimized clinical performance of growth hormone with an expanded genetic code , 2011, Proceedings of the National Academy of Sciences.

[12]  P. Schultz,et al.  Selective formation of covalent protein heterodimers with an unnatural amino acid. , 2011, Chemistry & biology.

[13]  R. Goody,et al.  A highly efficient strategy for modification of proteins at the C terminus. , 2010, Angewandte Chemie.

[14]  Benjamin W. Thuronyi,et al.  Identification of highly reactive sequences for PLP-mediated bioconjugation using a combinatorial peptide library. , 2010, Journal of the American Chemical Society.

[15]  T. Keller,et al.  Functionalization of peptides and proteins by Mukaiyama aldol reaction. , 2010, Journal of the American Chemical Society.

[16]  D. Jameson,et al.  Fluorescence polarization/anisotropy in diagnostics and imaging. , 2010, Chemical reviews.

[17]  M. Francis,et al.  Site‐Specific Protein Bioconjugation via a Pyridoxal 5′‐Phosphate‐Mediated N‐Terminal Transamination Reaction , 2010, Current protocols in chemical biology.

[18]  Zhiyong Wang,et al.  Genetic incorporation of an aliphatic keto-containing amino acid into proteins for their site-specific modifications. , 2010, Bioorganic & medicinal chemistry letters.

[19]  Carolyn R Bertozzi,et al.  Bioorthogonal chemistry: fishing for selectivity in a sea of functionality. , 2009, Angewandte Chemie.

[20]  J. Micklefield,et al.  Selective covalent protein immobilization: strategies and applications. , 2009, Chemical reviews.

[21]  C. Bertozzi,et al.  Site-specific chemical modification of recombinant proteins produced in mammalian cells by using the genetically encoded aldehyde tag , 2009, Proceedings of the National Academy of Sciences.

[22]  T. Ramya,et al.  High-efficiency labeling of sialylated glycoproteins on living cells , 2009, Nature Methods.

[23]  Ronald T Raines,et al.  Hydrolytic stability of hydrazones and oximes. , 2008, Angewandte Chemie.

[24]  Tsubasa Sasaki,et al.  N-terminal labeling of proteins by the Pictet-Spengler reaction. , 2008, Bioorganic & medicinal chemistry letters.

[25]  M. Francis,et al.  Optimization of a biomimetic transamination reaction. , 2008, Journal of the American Chemical Society.

[26]  M. Francis,et al.  Protein-cross-linked polymeric materials through site-selective bioconjugation. , 2008, Angewandte Chemie.

[27]  B. Trout,et al.  Strictosidine synthase: mechanism of a Pictet-Spengler catalyzing enzyme. , 2008, Journal of the American Chemical Society.

[28]  김미정 DBU-promoted effcient and versatile aza-Michael addition , 2008 .

[29]  M. J. Kim,et al.  1,8-Diazabicyclo[5.4.0]undec-7-ene (DBU)-Promoted Efficient and Versatile aza-Michael Addition. , 2007 .

[30]  Carolyn R Bertozzi,et al.  Introducing genetically encoded aldehydes into proteins. , 2007, Nature chemical biology.

[31]  P. Dawson,et al.  Nucleophilic catalysis of oxime ligation. , 2006, Angewandte Chemie.

[32]  Neel S. Joshi,et al.  N-terminal protein modification through a biomimetic transamination reaction. , 2006, Angewandte Chemie.

[33]  S. Weiss,et al.  Single-molecule fluorescence studies of protein folding and conformational dynamics. , 2006, Chemical reviews.

[34]  Thomas Nyström,et al.  Role of oxidative carbonylation in protein quality control and senescence , 2005, The EMBO journal.

[35]  M. Howarth,et al.  Site-specific labeling of cell surface proteins with biophysical probes using biotin ligase , 2005, Nature Methods.

[36]  Scott B Ficarro,et al.  Parallel identification of O-GlcNAc-modified proteins from cell lysates. , 2004, Journal of the American Chemical Society.

[37]  K. Niikura,et al.  Control of bacteria adhesion by cell-wall engineering. , 2004, Journal of the American Chemical Society.

[38]  M. Campiglio,et al.  Biologic and therapeutic role of HER2 in cancer , 2003, Oncogene.

[39]  P. Schultz,et al.  Addition of the keto functional group to the genetic code of Escherichia coli , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[40]  A. Yamashita,et al.  Novel [2,3]-sigmatropic rearrangement for carbon--nitrogen bond formation. , 2001, Journal of the American Chemical Society.

[41]  C. Bertozzi,et al.  Ketone isosteres of 2-N-acetamidosugars as substrates for metabolic cell surface engineering. , 2001, Journal of the American Chemical Society.

[42]  R. Nonno,et al.  2-[N-Acylamino(C1-C3)alkyl]indoles as MT1 melatonin receptor partial agonists, antagonists, and putative inverse agonists. , 1998, Journal of medicinal chemistry.

[43]  C. Bertozzi,et al.  Engineering chemical reactivity on cell surfaces through oligosaccharide biosynthesis. , 1997, Science.

[44]  P. Molina,et al.  Regiospecific Preparation of γ-Carbolines and Pyrimido(3,4-a) indole Derivatives by Intramolecular Ring Closure of Heterocumulene- Substituted Indoles. , 1996 .

[45]  R. Grubbs,et al.  Safe and Convenient Procedure for Solvent Purification , 1996 .

[46]  S. Ito,et al.  1,1′-(azodicarbonyl)dipiperidine-tributylphosphine, a new reagent system for mitsunobu reaction , 1993 .

[47]  K. Geoghegan,et al.  Site-directed conjugation of nonpeptide groups to peptides and proteins via periodate oxidation of a 2-amino alcohol. Application to modification at N-terminal serine. , 1992, Bioconjugate chemistry.

[48]  W. Markesbery,et al.  Excess brain protein oxidation and enzyme dysfunction in normal aging and in Alzheimer disease. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[49]  R. Reisfeld,et al.  Antibody conjugates with morpholinodoxorubicin and acid-cleavable linkers. , 1990, Bioconjugate chemistry.

[50]  P. Hermkens,et al.  Syntheses of 1,3-disubstituted N-oxy-β-carbolines by the Pictet-Spengler reactions of N-oxy-tryptophan and -tryptamine derivatives , 1990 .

[51]  A. McPhail,et al.  A concise route to the oxathiazepine containing eudistomin skeleton and some carba-analogs , 1989 .

[52]  H. Ottenheijm,et al.  Synthesis of 2-Hydroxy-3-(ethoxycarbonyl)-1,2,3,4-tetrahydro-β-carbolines from N-Hydroxytryptophans. An Approach to the Eudistomin Series. , 1987 .

[53]  D. O'Shannessy,et al.  Quantitation of glycoproteins on electroblots using the biotin-streptavidin complex. , 1987, Analytical biochemistry.

[54]  P. Nakane,et al.  PEROXIDASE-LABELED ANTIBODY A NEW METHOD OF CONJUGATION , 1974, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[55]  W. Jencks CHAPTER 6 – Studies on the Mechanism of Oxime and Semicarbazone Formation† , 1968 .

[56]  M. Paabo,et al.  Use of the glass electrode in deuterium oxide and the relation between the standardized pD (paD) scale and the operational pH in heavy water , 1968 .

[57]  W. Jencks,et al.  Reactivity of Nucleophilic Reagents toward Esters , 1960 .