Plasmids do not consistently stabilize cooperation across bacteria but may promote broad pathogen host-range
暂无分享,去创建一个
A. Griffin | S. West | T. Scott | G. Wild | M. Ghoul | Joshua L Thomas | Anna E Dewar | Anna E. Dewar
[1] Jacob Cohen. Statistical Power Analysis for the Behavioral Sciences , 1969, The SAGE Encyclopedia of Research Design.
[2] A. Rocker,et al. Cooperative virulence can emerge via horizontal gene transfer but is stabilized by transmission , 2021, bioRxiv.
[3] L. McNally,et al. Kin selection explains the evolution of cooperation in the gut microbiota , 2021, Proceedings of the National Academy of Sciences.
[4] R. MacLean,et al. Beyond horizontal gene transfer: the role of plasmids in bacterial evolution , 2021, Nature Reviews Microbiology.
[5] M. Horn,et al. Coevolving Plasmids Drive Gene Flow and Genome Plasticity in Host-Associated Intracellular Bacteria , 2020, Current Biology.
[6] John H. E. Nash,et al. Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance , 2020, Microbial genomics.
[7] Lorena Rodríguez-Rubio,et al. Extensive antimicrobial resistance mobilization via multicopy plasmid encapsidation mediated by temperate phages , 2020, The Journal of antimicrobial chemotherapy.
[8] E. Rocha,et al. Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria , 2020, Nature Communications.
[9] T. Barraclough,et al. The role of hosts, plasmids and environment in determining plasmid transfer rates: A meta-analysis. , 2020, Plasmid.
[10] M. Toll-Riera,et al. Genetic dominance governs the evolution and spread of mobile genetic elements in bacteria , 2019, Proceedings of the National Academy of Sciences.
[11] C. Morris,et al. The overlapping continuum of host range among strains in the Pseudomonas syringae complex , 2019, Phytopathology Research.
[12] G. Dantas,et al. Multidrug-resistant plasmids repress chromosomally encoded T6SS to enable their dissemination , 2019, Proceedings of the National Academy of Sciences.
[13] Emmanuel Paradis,et al. ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R , 2018, Bioinform..
[14] James Robertson,et al. MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies , 2018, Microbial genomics.
[15] J. Graham,et al. Recent advances in the understanding of Xanthomonas citri ssp. citri pathogenesis and citrus canker disease management. , 2018, Molecular plant pathology.
[16] James T. Morton,et al. Methods for phylogenetic analysis of microbiome data , 2018, Nature Microbiology.
[17] C. Kost,et al. Convergent Evolution in Intracellular Elements: Plasmids as Model Endosymbionts. , 2018, Trends in microbiology.
[18] R. MacLean,et al. Multicopy plasmids allow bacteria to escape from fitness trade-offs during evolutionary innovation , 2018, Nature Ecology & Evolution.
[19] M. Touchon,et al. Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter , 2017, Environmental microbiology.
[20] R. Kümmerli,et al. Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities , 2017, Nature Communications.
[21] N. Firth,et al. Diverse mobilization strategies facilitate transfer of non-conjugative mobile genetic elements. , 2017, Current opinion in microbiology.
[22] S. West,et al. Sociomics: Using Omic Approaches to Understand Social Evolution. , 2017, Trends in genetics : TIG.
[23] Alan McNally,et al. Why prokaryotes have pangenomes , 2017, Nature Microbiology.
[24] H. Schielzeth,et al. The coefficient of determination R2 and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded , 2016, bioRxiv.
[25] Richard A Neher,et al. panX: pan-genome analysis and exploration , 2016, bioRxiv.
[26] Danna R. Gifford,et al. Multicopy plasmids potentiate the evolution of antibiotic resistance in bacteria , 2016, Nature Ecology &Evolution.
[27] E. Banchio,et al. Roles of Extracellular Polysaccharides and Biofilm Formation in Heavy Metal Resistance of Rhizobia , 2016, Materials.
[28] Brian C. Thomas,et al. A new view of the tree of life , 2016, Nature Microbiology.
[29] Lena Schwartz,et al. Experimental Design For The Life Sciences , 2016 .
[30] Alexander G Fletcher,et al. Migration and horizontal gene transfer divide microbial genomes into multiple niches , 2015, Nature Communications.
[31] J. Ramsay,et al. Origin-of-transfer sequences facilitate mobilisation of non-conjugative antimicrobial-resistance plasmids in Staphylococcus aureus , 2015, Nucleic acids research.
[32] Anup Som,et al. Causes, consequences and solutions of phylogenetic incongruence , 2015, Briefings Bioinform..
[33] R. Kümmerli,et al. Habitat structure and the evolution of diffusible siderophores in bacteria. , 2014, Ecology letters.
[34] Sam P. Brown,et al. Cooperative secretions facilitate host range expansion in bacteria , 2014, Nature Communications.
[35] François Taddei,et al. Genetic information transfer promotes cooperation in bacteria , 2014, Proceedings of the National Academy of Sciences.
[36] Vineet K. Sharma,et al. MP3: A Software Tool for the Prediction of Pathogenic Proteins in Genomic and Metagenomic Data , 2014, PloS one.
[37] A. Griffin,et al. TOWARD AN EVOLUTIONARY DEFINITION OF CHEATING , 2014, Evolution; international journal of organic evolution.
[38] L. Comstock,et al. An Ecological Network of Polysaccharide Utilization among Human Intestinal Symbionts , 2014, Current Biology.
[39] Sam P. Brown,et al. The interplay between relatedness and horizontal gene transfer drives the evolution of plasmid-carried public goods , 2013, Proceedings of the Royal Society B: Biological Sciences.
[40] Shinichi Nakagawa,et al. A general and simple method for obtaining R2 from generalized linear mixed‐effects models , 2013 .
[41] T. Nogueira,et al. Rapid Evolution of the Sequences and Gene Repertoires of Secreted Proteins in Bacteria , 2012, PloS one.
[42] Otto X. Cordero,et al. Ecological Populations of Bacteria Act as Socially Cohesive Units of Antibiotic Production and Resistance , 2012, Science.
[43] D. Rankin,et al. THE EVOLUTION OF CONFLICT RESOLUTION BETWEEN PLASMIDS AND THEIR BACTERIAL HOSTS , 2012, Evolution; international journal of organic evolution.
[44] Liam J. Revell,et al. phytools: an R package for phylogenetic comparative biology (and other things) , 2012 .
[45] Jarrod Hadeld. MCMCglmm Course Notes , 2012 .
[46] Joseph Felsenstein,et al. Controlling for non-independence in comparative analysis of patterns across populations within species , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.
[47] U. Gophna,et al. The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. , 2011, Molecular biology and evolution.
[48] Sam P. Brown,et al. Horizontal Gene Transfer and The Evolution of Bacterial Cooperation , 2011, Evolution; international journal of organic evolution.
[49] Sam P. Brown,et al. What traits are carried on mobile genetic elements, and why? , 2011, Heredity.
[50] Fernando de la Cruz,et al. Mobility of Plasmids , 2010, Microbiology and Molecular Biology Reviews.
[51] Martin Ester,et al. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes , 2010, Bioinform..
[52] Jarrod D. Hadfield,et al. MCMC methods for multi-response generalized linear mixed models , 2010 .
[53] Sam P. Brown,et al. Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence , 2009, Current Biology.
[54] T. Clutton‐Brock,et al. Primate ecology and social organization , 2009 .
[55] F. Schmidt. Meta-Analysis , 2008 .
[56] A. Griffin,et al. Cooperation and conflict in quorum-sensing bacterial populations , 2007, Nature.
[57] M. Schuster,et al. Social cheating in Pseudomonas aeruginosa quorum sensing , 2007, Proceedings of the National Academy of Sciences.
[58] T. Garland,et al. Within-species variation and measurement error in phylogenetic comparative methods. , 2007, Systematic biology.
[59] J. Gardy,et al. Methods for predicting bacterial protein subcellular localization , 2006, Nature Reviews Microbiology.
[60] A. Griffin,et al. Social evolution theory for microorganisms , 2006, Nature Reviews Microbiology.
[61] Hon Keung Tony Ng,et al. Statistics: An Introduction Using R , 2006, Technometrics.
[62] Jun Zhu,et al. Statistics for correlated data: phylogenies, space, and time. , 2006, Ecological applications : a publication of the Ecological Society of America.
[63] Christopher M Thomas,et al. Mechanisms of, and Barriers to, Horizontal Gene Transfer between Bacteria , 2005, Nature Reviews Microbiology.
[64] A. Griffin,et al. Cooperation and competition in pathogenic bacteria , 2004, Nature.
[65] Vincent Burrus,et al. Shaping bacterial genomes with integrative and conjugative elements. , 2004, Research in microbiology.
[66] G. Fournous,et al. Phage as agents of lateral gene transfer. , 2003, Current opinion in microbiology.
[67] A. Møller,et al. A survey of the statistical power of research in behavioral ecology and animal behavior , 2003 .
[68] Eduardo P C Rocha,et al. Base composition bias might result from competition for metabolic resources. , 2002, Trends in genetics : TIG.
[69] J. Ghigo. Natural conjugative plasmids induce bacterial biofilm development , 2001, Nature.
[70] Jeff Smith. The social evolution of bacterial pathogenesis , 2001, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[71] N. Høiby,et al. Original articles Chromosomal -lactamase is packaged into membrane vesicles and secreted from Pseudomonas aeruginosa , 2000 .
[72] N. Høiby,et al. Chromosomal beta-lactamase is packaged into membrane vesicles and secreted from Pseudomonas aeruginosa. , 2000, The Journal of antimicrobial chemotherapy.
[73] Paul M. Orwin,et al. Exotoxins of Staphylococcus aureus. , 2000, Clinical microbiology reviews.
[74] J. Lake,et al. Horizontal gene transfer among genomes: the complexity hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[75] G. Cornelis,et al. The Virulence Plasmid of Yersinia, an Antihost Genome , 1998, Microbiology and Molecular Biology Reviews.
[76] J. Keasling,et al. mRNA stability and plasmid copy number effects on gene expression from an inducible promoter system. , 1998, Biotechnology and bioengineering.
[77] P. Reeves,et al. The lux autoinducer regulates the production of exoenzyme virulence determinants in Erwinia carotovora and Pseudomonas aeruginosa. , 1993, The EMBO journal.
[78] T. L. Hale. Genetic basis of virulence in Shigella species , 1991 .
[79] M. Pagel,et al. The comparative method in evolutionary biology , 1991 .
[80] A. Grafen. The phylogenetic regression. , 1989, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[81] William Kruskal,et al. Miracles and Statistics: The Casual Assumption of Independence , 1988 .
[82] J. Felsenstein. Phylogenies and the Comparative Method , 1985, The American Naturalist.
[83] S. Hurlbert. Pseudoreplication and the Design of Ecological Field Experiments , 1984 .
[84] W. Hamilton. The genetical evolution of social behaviour. II. , 1964, Journal of theoretical biology.
[85] W. Hamilton. The genetical evolution of social behaviour. I. , 1964, Journal of theoretical biology.
[86] W. Hamilton. The Evolution of Altruistic Behavior , 1963, The American Naturalist.